BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G72240.1

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926587 jgi|Araly1|926587|scaffold_202148.1                        606    4e-173


> Ahg926587 jgi|Araly1|926587|scaffold_202148.1
Length=403

 Score =  606 bits (328),  Expect = 4e-173
 Identities = 382/407 (94%), Gaps = 8/407 (2%)
 Strand=Plus/Plus

Query  13   ACagaagaacaagaagaacaatgaaatcaaagaaagctgaagaagggaagagaTCGGATT  72
            ||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||
Sbjct  1    ACAGAAGAACAAGAAGAACAATGAAATCAAAGAAAGCTGAAGAA---AAGAGATCAGATT  57

Query  73   CAAATTCTAATTCAGACAATAACTTCTCATGCAAGAAGCACACGAAACATAGACAGTCTC  132
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  58   CAAATTCTGATTCAGACAATAACTTCTCATGCAAGAAGCACACGAAACATAGACAGTCTC  117

Query  133  CTGGAATCTGTTCTCTCTGTCTCACCGAGAGGCTCTCTAAGCTATCTCTGGAGTACTACG  192
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  118  CTGGAATCTGTTCCCTCTGTCTCACCGAGAGGCTCTCTAAGCTGTCTCTGGAGTACTACG  177

Query  193  ATTACACTAAGAAGGCAGTTGAAACGGCGACGTATTGCGGCTCAACATCAACAtcttctt  252
            | |||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||
Sbjct  178  ACTACACTAAGAAGGCAGCTGAAACGGCGACGTATTGCGGCTCGTCATCAACATCTTCTT  237

Query  253  cctcgtcggtctcgtcttgttactcttcttcttctgtctcttcttgttcgtctccttTGC  312
            |||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||
Sbjct  238  CCTCGTCGGTCTCGTCTTGCGACTCTTCTTCTTCGGTCTCTTCTTGTTCATCTCCTTTGC  297

Query  313  AATATCGGTATAGAGA--A-AAGAAGAAGGATGGGAAGAAACAAAGCTTCTTGTTCAGAT  369
            ||||||||||||||||  | |||||||| |||||||||||||||||||| || |||||||
Sbjct  298  AATATCGGTATAGAGATCAGAAGAAGAAAGATGGGAAGAAACAAAGCTTTTTATTCAGAT  357

Query  370  TATTGCTCGGATCCATCGTAGACTAGTTCTTTTCTTTC-CGTAGTTT  415
            |||||||||||||||||||||| |||||||||| |||| | ||||||
Sbjct  358  TATTGCTCGGATCCATCGTAGATTAGTTCTTTTATTTCAC-TAGTTT  403



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20871107183


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5