BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72280.1
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476357 jgi|Araly1|476357|fgenesh2_kg.2__1487__AT1G72280.1 2556 0.0
> Ahg476357 jgi|Araly1|476357|fgenesh2_kg.2__1487__AT1G72280.1
Length=1734
Score = 2556 bits (1384), Expect = 0.0
Identities = 1643/1762 (93%), Gaps = 42/1762 (2%)
Strand=Plus/Plus
Query 1 ACATGACATTCATTGCTTGCTTAAGACGAACTTCAGACACAACAAACACAACAATGGGGT 60
|||| |||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 1 ACATAACATTCATTGCTTGCTTAAGACGATCTTCAGACAC-A-AAACACAACAATGGGGT 58
Query 61 TTTGAGAAATTCCGGAAGACTCAAAAAACGTG-tttt-tatat-ttatttgtaaaaggat 117
|||||||| ||||||||||| ||||||||||| |||| | | | || |||||||||||||
Sbjct 59 TTTGAGAATTTCCGGAAGACACAAAAAACGTGTTTTTCTTTCTCTTTTTTGTAAAAGGAT 118
Query 118 ttatttgtcccatttcaatttccatttttgtaatttgtCATAATGGGAAAAGGCGCAATC 177
||||||| || | | | || | |||||||||| ||||| ||||
Sbjct 119 TTATTTG-------TC----T-C---------A-TT-T-ATAATGGGAAGAGGCGGAATC 154
Query 178 aaagaagaagagagcgaaaagaagagaaaaaCATGGCGATGGCCTTTAGCGACTTTGGTT 237
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 155 AAAGAAGAAGAGAGCGAAAAAAAGAGAAGAACATGGCGATGGCCTTTAGCGACTTTGGTT 214
Query 238 GTCGTGTTTTTGGCAGTTGCTGTGAGCTCTAGGACGAATTCCAATGTCGGTTTCTTCTTC 297
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 215 GTTGTGTTTTTGGCAGTTGCTGTGAGCTCTAGGACGAATTCTAATGTCGGTTTCTTCTTC 274
Query 298 AGCGATCGAAATTCTTGTAGCTGTTCACTTCAGAAAACAGGTAAATACAAAGGTATGATT 357
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 275 AGCGATCGAAATTCTTGTAGCTGTTCACTTCAGGGAACAGGTAAATACAAAGGTATGGTT 334
Query 358 GAGGACTGTTGCTGTGATTATGAAACAGTTGACAATCTCAACACTGAGGTTTTGAATCCT 417
|||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||
Sbjct 335 GAGGACTGTTGCTGTGATTACGAAACAGTTGACAATCTTAATAGTGAGGTTTTGAATCCT 394
Query 418 TTGCTTCAAGATCTCGTCACAACTCCATTTTTCCGGTACTATAAGGTTAAACTATGGTGT 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 395 TTGCTTCAAGATCTCGTCACAACTCCATTTTTTCGGTACTATAAGGTTAAACTGTGGTGT 454
Query 478 GACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAA 514
Query 538 TGTCCAGAGAATGAGTTTCCAGAACCATTTAAAAAGCCATTTGTCCCAGGTCTTCCTTCT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TGTCCAGAGAATGAGTTTCCAGAACCATTTAAAAAGCCATTTGTCCCAGGTCTTCCTTCT 574
Query 598 GATGATCTCAAGTGTCAAGAGGGAAAACCTCAGGGAGCTGTTGACCGTACTATAGATAAC 657
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 575 GATGATCTCATGTGTCAAGAGGGAAAACCTCAGGGAGCTGTTGACCGGACTATAGATAAC 634
Query 658 AGAGCATTCAGAGGATGGGTCGAAACCAAGAATCCATGGACGCATGACGATGACACAGAT 717
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 AGAGCTTTCAGAGGTTGGGTCGAAACCAAGAATCCATGGACGCATGACGATGACACAGAT 694
Query 718 AGTGGTGAGATGAGTTATGTTAATCTTCAGTTAAACCCCGAACGGTATACTGGTTATACT 777
|| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 695 AGCGGTGAGATGACTTATGTCAATCTTCAGTTAAACCCCGAACGATATACTGGTTATACC 754
Query 778 GGACCTTCAGCTAGAAGGATTTGGGACTCCATATATTCAGAGAACTGTCCAAAATATTCA 837
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 755 GGACCTTCGGCTAGAAGGATTTGGGACTCCATATATTCGGAAAACTGTCCAAAATATTCA 814
Query 838 TCTGGGGAGACTTGTCCAGAGAAAAAAGTTTTGTACAAATTGATATCCGGTCTTCATTCT 897
||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 815 TCTGGGGAGACATGTCCGGAGAAAAAGGTATTGTACAAATTGATATCCGGTCTTCATTCT 874
Query 898 TCAATCTCGATGCACATAGCTGCTGATTATCTTCTTGATGAGTCTAGAAACCAGTGGGGA 957
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 875 TCAATCTCGATGCACATAGCTGCTGATTATCTTCTTGATGAGTCAAGCAACCAGTGGGGA 934
Query 958 CAGAACATTGAGCTGATGTACGATCGTATTCTTAGACATCCAGATCGTGTCAGAAATATG 1017
||||| || ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||
Sbjct 935 CAGAATATCGAGCTGATGTATGATCGAATTCTGAGACATCCGGATCGTGTCAGAAATATG 994
Query 1018 TACTTCACGTATCTCTTTGTGCTACGTGCTGTTACTAAAGCAACAGCATACTTGGAGCAG 1077
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 995 TACTTCACGTATCTCTTTGTGCTACGTGCTGTAACTAAAGCAACAGCATACTTGGAGCAG 1054
Query 1078 GCAGAGTATGACACAGGAAACCATGCTGAAGATCTGAAAACACAATCCTTGATCAAACAG 1137
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1055 GCAGAGTATGACACAGGAAACCATGCTGAAGATCTGAAAACACAGTCCTTGATCAAACAG 1114
Query 1138 TTGTTGTATAGTCCGAAACTCCAAACAGCTTGTCCTGTTCCGTTTGATGAAGCTAAACTG 1197
|| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| ||
Sbjct 1115 TTATTGTATAGTCCAAAACTTCAAACAGCGTGTCCGGTTCCGTTTGATGAAGCTAAGTTG 1174
Query 1198 TGGCAAGGTCAAAGTGGACCAGAACTGAAACAGCAGATTCAGAAACAATTCAGAAATATA 1257
|||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 1175 TGGCAAGGTCAAAGTGGACCAGAATTGAAACAGCAAATCCAGAAACAATTCAGAAATATA 1234
Query 1258 AGTGCACTAATGGATTGCGTAGGTTGTGAAAAATGCCGACTTTGGGGGAAACTTCAGGTT 1317
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1235 AGTGCACTAATGGATTGCGTAGGTTGTGAAAAATGCCGGCTTTGGGGGAAACTTCAGGTT 1294
Query 1318 CAGGGTCTTGGGACAGCATTGAAAATTCTCTTCTCTGTTGGAAATCAAGACATTGGTGAC 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 CAGGGTCTTGGGACAGCATTGAAAATTCTCTTCTCTGTTGGAAATCAAGACATTGGTGAC 1354
Query 1378 CAAACACTGCAACTGCAACGGAATGAGGTGATTGCACTGGTGAATTTGCTCAACCGTCTC 1437
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1355 CAAACACTGCAACTGCAACGGAATGAGGTGATTGCGCTGGTGAATTTACTCAACCGTCTC 1414
Query 1438 TCCGAGTCGGTTAAAATGGTCCACGATATGAGTCCTGACGTGGAGCGGCTAATGGAGGAT 1497
|| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 1415 TCTGAGTCGGTTAAAATGGTCCACGATATGGGACCTGACGTAGAGCGGCTAATGGAGGAT 1474
Query 1498 CAGATAGCCAAAGTATCAGCTAAACCTGCAAGATTAAGAAGAATATGGGATTTAGCTGTC 1557
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1475 CAGATAGCTAAAGTATCAGCTAAACCTGGAAGATTAAGAAGAATATGGGATTTAGCTGTC 1534
Query 1558 TCATTCTGGTGAGTTACACAACGAACTATCCAGCTTTTAGGCATTCATGGTCAATCTATA 1617
|| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1535 TCCTTCTGGTGAGTTACACAACGAACTGTCCAGCTATTAGGCATTCATGGTCAATCTATA 1594
Query 1618 CAAGCCTAGGATGGATA-GTCATTGTTGTAACGAATTAAGGaaaaaaaaaTCATTATAGA 1676
|||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||
Sbjct 1595 AAAGCCTAGGATGGATAAGTCATTGTTGTAACGACTGAAGGAAAAAAAA-TCATTATAGA 1653
Query 1677 GAA---A-A-----GATTTTTT-GTAAAACAGATAAAAGAAATAGAGATTCTTGAGGTAA 1726
||| | | |||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 1654 GAACTCATACAAAAGATTTTTTTGTAAAACAGATAAA-GAAATATAGATTCTTGAGGTAA 1712
Query 1727 CTAATCTATACTGACACAGAAG 1748
|||||| ||||||| ||| |||
Sbjct 1713 CTAATCCATACTGATACAAAAG 1734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66162755565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5