BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72300.1
Length=3647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476358 jgi|Araly1|476358|fgenesh2_kg.2__1488__AT1G72300.1 5585 0.0
Ahg920636 jgi|Araly1|920636|scaffold_101917.1 1676 0.0
> Ahg476358 jgi|Araly1|476358|fgenesh2_kg.2__1488__AT1G72300.1
Length=3641
Score = 5585 bits (3024), Expect = 0.0
Identities = 3458/3663 (94%), Gaps = 48/3663 (1%)
Strand=Plus/Plus
Query 1 AACGATGGTATTGAGAGCCATTTACAAGCTTCGGACAGAGAAACCCAGATTGGATAATCA 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AACGATGGTATTGAGAGCCATTTACAAGCTTCGGACACAGAAACCCAGATTGGATAATCA 60
Query 61 TGtcttttgtttcttcttttccctctccttcttcttcttc-t-tt-ttcaagctttctta 117
|||||||||||||||||||||||||||||||||||||||| | || |||||||||| |||
Sbjct 61 TGTCTTTTGTTTCTTCTTTTCCCTCTCCTTCTTCTTCTTCTTCTTCTTCAAGCTTTATTA 120
Query 118 atctttctcagcttcttcttcttcttcttttgttctCGCCATGATTGACGAGAAGATGAG 177
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 ATC-TTCTCAGCTTCTTCTTCTTCTTCTCTTGTTCTCGCCATGATTGACGAGAAGATGAG 179
Query 178 ATCTAAATCCATTGGTCCTTTTGTGAGACAAGTAAAACCTTTGAGTCCTCACATGGTTCT 237
||||||||||||| ||||| | |||||| |||||||||||||||||||| |||||||||
Sbjct 180 ATCTAAATCCATTTGTCCTCTCCTGAGACCAGTAAAACCTTTGAGTCCTCGCATGGTTCT 239
Query 238 CTTTGTCCTTCTCTACGTTCTTTCCATTTCTGTCTTCTTTCTTACAGTTTCAGAGGCTGT 297
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 CTTTGTCCTTGTCTACGTTCTTTCCCTTTCTGTCTTCTTTCTTACAGTTTCAGAGGCTGT 299
Query 298 TTGTAATCTTCAGGATCGAGATTCTCTCCTTTGGTTCTCTGGCAACGTATCATCTCCAGT 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 TTGTAATCTTCAGGATCGAGATTCTCTCCTTTGGTTCTCTGGCAACGTATCATCTCCACT 359
Query 358 CTCTCCTTTGCATTGGAATTCGTCCATTGATTGTTGCTCCTGGGAAGGAATCTCTTGTGA 417
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 360 CTCTCCTTTGCATTGGAATTCGTCCACTGATTGTTGCTCCTGGGAAGGTATCTCTTGTGA 419
Query 418 TAAGTCTCCTGAAAATCGTGTTACTTCGATTATTTTGTCCTCTAGAGGACTCTCTGGCAA 477
| | ||||| ||||||||||| |||||| || ||||| ||||||||||||||||||||||
Sbjct 420 TGATTCTCCCGAAAATCGTGTCACTTCGGTTCTTTTGCCCTCTAGAGGACTCTCTGGCAA 479
Query 478 TCTTCCGTCGTCTGTTTTGGATCTCCAG-CGTCTCTCTCGTCTCGACCTTTCTCATAACC 536
||| || |||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 480 TCTCCCATCGTCTGTTTTGAATCTCC-GCCGTCTCTCTCGTCTCGACCTTTCTCATAACC 538
Query 537 GTCTCTCTGGTCCACTCCCACCTGGTTTCCTCTCTGCCCTTGATCAGCTCTTGGTTCTTG 596
||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 539 GTCTCTCTGGTCCACTCCCGCCAGATTTCCTCTCTGCCCTTGATCAGCTCTTGGTTCTTG 598
Query 597 ATCTTAGTTACAACAGTTTCAAAGGTGAATTGCCACTTCAACAATCATTTGGCAATGGAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATCTTAGTTACAACAGTTTCAAAGGTGAATTGCCACTTCAACAATCATTTGGCAATGGAA 658
Query 657 GCAACGGAATCTTCCCAATTCAGACCGTTGATCTCTCCAGCAATCTTCTTGAGGGAGAAA 716
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCAACGGAATCTTTCCAATTCAGACCGTTGATCTCTCCAGCAATCTTCTTGAGGGAGAAA 718
Query 717 TTCTCAGTA--GTTCTGTTTTTCTTC-AGGGTGCTTTCAATTTAACCAGTTTCAATGTCA 773
| ||| | | |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 719 TCCTC-G-ACGGTTCTGTTTTTC-TCGAGGGTGCTTTCAATTTAACCAGTTTCAATGTCA 775
Query 774 GCAACAACAGCTTCACGGGTTCT-ATCCCTTCCTTCATGTGCACAGCTTCGCCGCAGCTC 832
| |||||||||||||||||| || || |||||||||||||||||| |||| |||||||||
Sbjct 776 GTAACAACAGCTTCACGGGTCCTAAT-CCTTCCTTCATGTGCACAACTTCACCGCAGCTC 834
Query 833 ACCAAACTGGATTTCTCCTACAATGATTTCAGCGGTGATCTCTCTCAAGAATTAAGCAGA 892
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 835 ACCAAACTGGATTTCTCCTACAATGATTTCAGTGGTGAACTCTCTCAAGAATTAGGCAGA 894
Query 893 TGCTCGAGGCTAAGTGTTCTTCGAGCAGGCTTCAACAATCTCTCTGGTGAAATCCCCAAA 952
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 895 TGCTCGAGACTAAGTGTTCTTCGAGCAGGCTTCAACAATCTCTCTGGGGAAATCCCTAAA 954
Query 953 GAAATCTACAATCTTCCTGAGCTCGAGCAACTCTTTTTACCAGTCAACCGTCTTTCTGGC 1012
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GAAATCTACAAACTTCCTGAGCTCGAGCAACTCTTTTTACCAGTCAACCGTCTTTCTGGC 1014
Query 1013 AAAATTGATAATGGGATTACTCGTCTCACCAAACTGACATTGCTTGAGCTTTAC-TCTAA 1071
|| |||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1015 AAGATTGATGATGGGATTACTCGTCTCACCAAACTGACATTGCTTGAGCTTTACTTC-AA 1073
Query 1072 TCACATCGAAGGAGAAATACCCAAGGATATAGGTAAGCTTTCGAAACTGAGTAGCCTCCA 1131
|||| | |||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1074 TCACCTTGAAGGAGAAATACCAAATGATATAGGTAAGCTTTCCAAACTGAGTAGCCTCCA 1133
Query 1132 ACTCCATGTCAATAACCTCATGGGTTCTATCCCGGTTTCTCTCGCCAATTGCACAAAACT 1191
||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 1134 ACTCCATATCAATAACCTCACGGGTTTTATCCCGGTTTCTCTCGCCAATTGCACAAATCT 1193
Query 1192 CGTGAAGTTGAATTTACGGGTTAATCAGCTGGGAGGAACTTTATCGGCGATAGACTTTTC 1251
|||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| ||
Sbjct 1194 CGTGAAGTTGAATTTACGAGTTAATAAGCTGGGAGGAAATTTATCGGCGATAGACTTCTC 1253
Query 1252 CCGGTTTCAGAGCCTCAGCATTCTGGACCTCGGAAACAATAGCTTCACCGGCGAATTTCC 1311
|| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 1254 CCAGTTTCAGAGCCTCAGCATTCTGGACCTTGGAAACAATAGCTTCACTGGGGAATTCCC 1313
Query 1312 CTCCACGGTTTACTCATGCAAAATGATGACAGCAATGAGGTTTGCAGGCAACAAGTTAAC 1371
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1314 CTCCACGGTTTACTCCTGCAAAACGATGACAGCAATGAGGTTTGCAGGCAACAAGTTAAC 1373
Query 1372 GGGACAGATATCTCCTCAAGTACTGGAATTGGAATCCCTGTCGTTCTTTACTTTTTCAGA 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GGGACAGATATCTCCTCAAGTACTGGAATTGGAATCCCTGTCGTTCTTTACTTTTTCAGA 1433
Query 1432 CAATAAAATGACGAACCTTACAGGGGCTCTCAGCATTCTACAAGGCTGCAAGAAGCTTTC 1491
|||| ||||||| ||||||||||| |||||| ||||||| ||||||||||||||||| ||
Sbjct 1434 CAATCAAATGACAAACCTTACAGGTGCTCTCCGCATTCTGCAAGGCTGCAAGAAGCTGTC 1493
Query 1492 TACTCTCATTATGGCAAAGAATTTTTACGACGAAACGGTACCAAGC-AACAAAGACTTTC 1550
|||||| || |||||||||||||||||||||||||| ||||||||| || | ||||||||
Sbjct 1494 TACTCTGATCATGGCAAAGAATTTTTACGACGAAACAGTACCAAGCGAA-ATAGACTTTC 1552
Query 1551 TTCG-GTCAGATGGATTTCCAAGCCTCCAAATTTTTGGTATCGGTGCGTGCAGATTGACA 1609
|| | |||||||||||||||||||||||||| || ||||||||||| |||||||||| |
Sbjct 1553 TT-GATTCAGATGGATTTCCAAGCCTCCAAATCTTCGGTATCGGTGCATGCAGATTGAAA 1611
Query 1610 GGTGAAATACCAGCTTGGCTGATCAAGCTCCAGAGGGTAGAAGTTATGGACCTGTCCATG 1669
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1612 GGTGAAATACCAGCTTGGCTGATCAAGCTCCAGAGGGTAGAAGTTATGGATCTGTCAATG 1671
Query 1670 AACCGA-TTCGTGGGGACAATTCCTGGTTGGCTAGGAACTCTTCCAGACCTTTTCTACTT 1728
|||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1672 AACCGACTT-GTGGGGTCAATTCCCGGTTGGCTAGGAACTCTTCCAGACCTTTTCTACTT 1730
Query 1729 GGATCTTTCCGATAACTTTCTAACAGGAGAGCTTCCAAAGGAACTGTTTCAGCTGAGAGC 1788
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1731 GGATCTTTCCGATAACTTGCTAACAGGAGAGCTTCCGAAGGAACTGTTTCAGCTGAGGGC 1790
Query 1789 TCTGATGTCGCAAAAGGCATACGATGCAACAGAGCGGAACTATCTGGAGCTGCCGGTTTT 1848
||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1791 TCTGATGTCCCAAAAGGCATACTATGCAACAGAGCGGAACTATCTAGAGCTGCCGGTTTT 1850
Query 1849 TGTCAATCCCAATAATGTCACCACTAATCAGCAATACAATCAGCTTTCCAGCCTCCCACC 1908
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1851 TGTCAATCCCAATAATGTCACCACCAATCAGCAATACAATCAGCTATCCAGCCTCCCACC 1910
Query 1909 TACGATATACATCAAGAGGAACAACTTGACTGGGACTATACCAGTCGAGGTTGGGCAGCT 1968
|||||||||||||| |||||| ||||||||||||| ||||||||| ||||| || |||||
Sbjct 1911 TACGATATACATCAGGAGGAATAACTTGACTGGGAGTATACCAGTGGAGGTCGGACAGCT 1970
Query 1969 AAAGGTTCTCCATATCCTGGAGCTTCTAGGTAATAATTTTTCTGGCAGCATCCCAGATGA 2028
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 1971 AAAGGTTCTCCATATCCTGGAGCTTCTAAGTAATAATTTTTCGGGCAGCATCCCCGATGA 2030
Query 2029 ATTGTCAAACCTCACTAACTTAGAGAGGCTGGACCTGTCCAACAACAATCTCTCCGGTAG 2088
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 ATTGTCAAACCTCACAAACTTAGAGAGGCTGGACCTGTCCAACAACAATCTCTCCGGTAG 2090
Query 2089 AATTCCATGGTCACTCACTGGACTCCATTTCCTGTCATATTTCAATGTTGCAAACAACAC 2148
|||||| ||||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct 2091 AATTCCTTGGTCACTCACGGGACTCCATTTCATGTCCTATTTCAATGTTGCAAACAACAC 2150
Query 2149 TCTCAGTGGGCCGATACCCACAGGGACCCAGTTTGATACCTTCCCAAAAGCAAATTTTGA 2208
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 2151 TCTCAGTGGGCCGATACCCACAGGGAGCCAGTTTGATACCTTCCCAAAAGCATATTTTGA 2210
Query 2209 AGGAAACCCCTTGCTGTGCGGTGGTGTACTGCTAACCTCCTGCGA-TCCAACTCAGCACT 2267
|||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||
Sbjct 2211 AGGAAACCCCTTGCTGTGCGGTGGCGTACTGCTAACCTCCTGC-ACTCCAACTCAGCCCT 2269
Query 2268 CTACTACAAAGA----TGGGTAAAGGAAAGGTCAACAGAACGCTTGTTTTGGGGCTTGTC 2323
|||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 2270 CTACTACAAAGATTTTTGGG-AAAGGAAAGGTCAACAGAAGGCTTGTTTTGGGGCTTGTC 2328
Query 2324 CTTGGGCttttttttGGCGTCAGTTTGATTTTGGTGCTGCTAGCTCTGTTGGTGCTTTCT 2383
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 2329 ATTGGGCTTTTTTTTGGCGTCAGTTTGATTTTGGTGATGTTAGCTCTGTTGGTGCTTTCC 2388
Query 2384 AAAAGGAGAGTAAATCCAGGAGACTCTGAGAATGCTGAACTGGAGATAAATTCCAATGGC 2443
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2389 AAGAGGAGGGTAAACCCAGGAGACTCTGAGAATGCTGAACTGGAGATAAATTCCAACGGC 2448
Query 2444 TCGTATTCTGAAGTCCCTCCAGGGTCGGATAAAGACATAAGTCTTGTACTGTTGTTTGGA 2503
||||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||
Sbjct 2449 TCGTATTCTGAAGTCCCTCAAGGGTCGGAGAAAGACATAAGTCTCGTACTGTTATTTGGA 2508
Query 2504 AACAGTAGATATGAAGTAAAAGACCTGACCATATTTGAGCTCTTGAAAGCTACCGACAAC 2563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2509 AACAGTAGATATGAAGTAAAAGACCTGACCATATTTGAGCTCTTGAAAGCTACCGACAAC 2568
Query 2564 TTCAGTCAAGCTAATATAATTGGCTGCGGCGGGTTTGGCCTTGTCTATAAGGCTACCTTG 2623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2569 TTCAGTCAAGCTAATATAATTGGCTGCGGCGGGTTTGGCCTTGTCTATAAGGCTACCTTG 2628
Query 2624 GATAATGGAACGAAACTGGCGGTTAAGAAACTCACAGGAGACTATGGTATGATGGA-AAA 2682
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2629 GATAATGGAACGAAACTGGCGGTTAAGAAACTCACAGGAGACTATGGTATGATGGAGAAA 2688
Query 2683 GGAATTCAAGGCAGAGGTAGAAGTTCTGTCCAGGGCGAAACATGAGAACCTGGTCGCTCT 2742
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2689 G-AATTCAAGGCAGAGGTAGAAGTTCTGTCCAGGGCGAAACATGAGAACCTGGTTGCTCT 2747
Query 2743 ACAAGGTTATTGCGTCCATGATAGTGCCCGGATACTAATTTACTCGTTCATGGAGAATGG 2802
||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 2748 ACAAGGTTACTGCGTCCATGATAGTGCCCGAATACTTATCTACTCGTTCATGGAGAATGG 2807
Query 2803 TAGTCTGGATTATTGGCTGCACGAAAATCCTGAGGGTCCAGCTCAGCTGGATTGGCCAAA 2862
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 2808 CAGTCTGGATTATTGGCTGCATGAAAATCCGGAGGGTCCAGCTCAGCTGGATTGGGCAAA 2867
Query 2863 AAGACTCAACATTATGAGAGGAGCAAGTAGTGGACTAGCATACATGCACCAGATATGTGA 2922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2868 AAGACTCAACATTATGAGAGGAGCAAGTAGTGGACTAGCATACATGCACCAGATATGTGA 2927
Query 2923 ACCACACATAGTACACCGAGACATCAAGTCCAGCAACATCCTTTTGGATGGAAATTTCAA 2982
|||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 2928 ACCACATATAGTACACCGAGACATCAAATCCAGCAACATCCTTCTGGATGGAAATTTCAA 2987
Query 2983 GGCATATGTAGCAGATTTCGGGTTGTCAAGATTGATCCTTCCATATCGCACCCATGTAAC 3042
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2988 GGCATATGTCGCAGATTTCGGGTTGTCAAGATTGATCCTTCCATATCGCACCCATGTAAC 3047
Query 3043 AACTGAGCTAGTGGGCACATTGGGTTACATTCCCCCAGAGTATGGACAAGCTTGGGTAGC 3102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3048 AACTGAGCTAGTGGGCACATTGGGTTACATTCCCCCAGAGTATGGACAAGCTTGGGTAGC 3107
Query 3103 CACTTTGAGAGGTGACGTGTACAGTTTTGGTGTAGTCATGCTCGAGCTTCTCACAGGGAA 3162
||||||||||||||| ||||||||||| || || |||||||| |||||||||||||| ||
Sbjct 3108 CACTTTGAGAGGTGATGTGTACAGTTTCGGAGTCGTCATGCTAGAGCTTCTCACAGGAAA 3167
Query 3163 AAGACCAATGGAGGTTTTCAGGCCAAAGATGTCAAGAGAATTGGTCGCATGGGTGCATAC 3222
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3168 AAGACCAATGGAGGTTTTCAGGCCAAAGATGTCAAGAGAATTGGTTGCATGGGTGCATAC 3227
Query 3223 TATGAAAAGAGATGGGAAACCAGAGGAAGTGTTTGATACATTGCTGAGAGAAAGTGGAAA 3282
||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 3228 TATGAAAAGGGACGGGAAGGCAGAGGAAGTGTTTGATACATTGCTGAGAGAAAGTGGTTA 3287
Query 3283 TGAAGAAGCGATGCTTCGTGTGCTTGACATAGCCTGCATGTGTGTGAACCAAAATCCAAT 3342
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3288 TGAAGAAGAGATGCTCCGTGTGCTTGACATAGCCTGCATGTGTGTGAACCAAAATCCAAT 3347
Query 3343 GAAAAGACCAAACATTCAACAAGTTGTAGACTGGCTaaagaatatagaagcggagaaaa- 3401
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3348 GAAAAGACCAAACATCCAACAAGTTGTAGACTGGCTAAAGAACATAGAAGCGGAGAAAAC 3407
Query 3402 a--ccaaaataacagagaagaacctgaagaagaagaagagaCGTAACTGTGTGTGTGCCT 3459
| |||||||||||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct 3408 AAACCAAAATAACAGAGAAGAACTTGAAGAAGAAGA-GA--CGTAACTGTGTGTGTGCCT 3464
Query 3460 TCCTTCCCTACATTCATCATTGTGACCAGATTCA-A-ATAT--CTGCATAAGTAAATATA 3515
|||| |||||||||||||||| |||||||| | |||| ||||||||||||||| |
Sbjct 3465 TCCT-----ACATTCATCATTGTGATCAGATTCATACATATATCTGCATAAGTAAATACA 3519
Query 3516 CACATATTTTT-CTTGTCAATTGCATATGTTAACCATCATTTCCATGTAAATTATAATTT 3574
||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3520 CACTTATTTTTTCTTGTCAATTGCATATGTTAACCATCATTTC-ATGTAAATTATAATTT 3578
Query 3575 TGATGGTAATAGAAGCTTTGATGATGTAAAGAACAGGAATTTATGCAGCTCGTGACATTC 3634
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 3579 TGATGGTAATAGAAGCTTTGATGATGTAAAGAACAGGAATTTATGCAGCTTGTGGCTTTC 3638
Query 3635 AAA 3637
|||
Sbjct 3639 AAA 3641
> Ahg920636 jgi|Araly1|920636|scaffold_101917.1
Length=2247
Score = 1676 bits (907), Expect = 0.0
Identities = 1697/2073 (82%), Gaps = 75/2073 (4%)
Strand=Plus/Plus
Query 215 CCTTTGAGTCCTCACATGGTTCTCTTTGTCCTTCTCTACGTTC-TTTCCATTTCTGTCTT 273
||| ||||| |||||||| |||||| ||| ||| | | ||| ||||| | |||| | |
Sbjct 75 CCTCTGAGTTCTCACATGCATCTCTTCCTCC-TCTGT-C-TTCTTTTCC-TATCTGCCCT 130
Query 274 CTTTCTTACAGTTTCAGAGGCTGTTTGTAATCTTCAGGATCGAGATTCTCTCCTTTGGTT 333
|||||||||| ||||||| ||||| ||||| || || || ||||| |||||| | |||||
Sbjct 131 CTTTCTTACACTTTCAGAAGCTGTCTGTAACCTACAAGACCGAGAATCTCTCATGTGGTT 190
Query 334 CTCTGGCAACGTATCATCTCCAGTCTCTCCTTTGCATTGGAATTCGTCCATTGATTGTTG 393
|| ||||| || || ||| | || ||||||||| ||||||||| |||||||||||||||
Sbjct 191 TTCCGGCAATGTTTCTTCTTCTGTTTCTCCTTTGAATTGGAATTTGTCCATTGATTGTTG 250
Query 394 CTCCTGGGAAGGAA-TCTCTTGTGATAAG-TC-TCCTGAAAATCGTGTTACT-TCGATTA 449
|||||||| |||| | || || ||| | || | | || | || || ||| | ||||
Sbjct 251 TTCCTGGGAGGGAATTATC-TGCGAT-GGTTCAT-CAGATAGTCACGTCACTAT-GATT- 305
Query 450 T-TTTGTCCTCTAGAGGACTCTCTGGCAATCTTCCGTCGTCTGTTTTGGATC-TCCAGCG 507
| ||| ||| ||||||||||||||||| |||| | ||||||| || || | | || ||
Sbjct 306 TCCTTGCCCTTTAGAGGACTCTCTGGCACTCTTGCTTCGTCTG-TTCAGAACATTCACCG 364
Query 508 TCTCTCTCGTCTCGACCTTTCTCATAACCGTCTCTCTGGTCCACTCCCACCTGGTTTCCT 567
|||||||| |||||| |||||||||||||||||||| ||||| |||||||| ||||| |
Sbjct 365 TCTCTCTCATCTCGATCTTTCTCATAACCGTCTCTCGGGTCCTCTCCCACCAGGTTTTTT 424
Query 568 CTCTG-CCCTTGATCAGCTCTTGGTTCTTGATCTTAGTTACAACAGTTTCAAAGGTGAAT 626
||| | |||||||||||||| |||||||| |||||||| |||| || ||||| |||||
Sbjct 425 CTC-GACCCTTGATCAGCTCATGGTTCTTAATCTTAGTCACAATAGCTTCAATGGTGAGC 483
Query 627 TGCCACTTCAACAATCATTTGGCA-ATGGAAGCAACGGAATCTTCCCAATTCAGACCGTT 685
|||||||| ||||| ||||||| | ||||||| || || |||||||| | || ||| ||
Sbjct 484 TGCCACTTGAACAAGCATTTGG-AGATGGAAGTGACAGATTCTTCCCAGTCCATACCATT 542
Query 686 GATCTCTCCAGCAATCTTCTTGAGGGAGAAATTCTCAGTAGTTCTGTTTTTCTTCAGGGT 745
||||| || |||||||| || | |||||||| ||||||| |||| | | | |||||
Sbjct 543 GATCTGTCAAGCAATCTCCTCCAAGGAGAAATCCTCAGTAATTCTATCGCTATCCAGGGA 602
Query 746 GCTTTCAATTTAACCAGTTTCAATGTCAGCAACAACAGCTTCACGGGTTCTATCCCTTCC 805
||| ||||||||| |||||||||||| || |||||||||||||| ||| | ||||||||
Sbjct 603 GCTATCAATTTAATCAGTTTCAATGTTAGTAACAACAGCTTCACAGGTCCAATCCCTTCA 662
Query 806 TTCATGTGCA-CAGCTTCGCCGCAGCTCACCAAACTGGATTTCTCCTACAATGATTTCAG 864
|||||||||| || ||| |||||||||| ||||||||||||||| || |||||||| ||
Sbjct 663 TTCATGTGCAGGAG-TTCACCGCAGCTCAGCAAACTGGATTTCTCTTATAATGATTTTAG 721
Query 865 CGGTGATCTCTCTCAAGAATTAAGCAGATGCTCGAGGCTAAGTGTTCTTCGAGCAGGCTT 924
||| || |||| ||||||||| ||||||| | ||||||||||||||| | |||||||||
Sbjct 722 CGGCCATATCTCCCAAGAATTAGGCAGATGTTTGAGGCTAAGTGTTCTACAAGCAGGCTT 781
Query 925 CAACAATCTCTCTGGTGAA-ATCCCCAA-AGAAATCTACAATC-TTCCTGAGCTCGAGCA 981
|||||||||||||||| || || |||| ||||||||||||| |||| |||||||||||
Sbjct 782 CAACAATCTCTCTGGT-AATAT-ACCAAGTGAAATCTACAATCTTTCC-GAGCTCGAGCA 838
Query 982 ACTCTTTTTACCAGTCAA-CCGTCTTTCTGGCAAA-ATTGATAATGGGATTACTC-GTCT 1038
||||||| | |||| ||| | | ||| | || ||| || |||||| || || | | ||
Sbjct 839 ACTCTTTCTGCCAGCCAATCAG-CTTACAGG-AAAGATCGATAATAACATCACCCAG-CT 895
Query 1039 CACCAAACTGACATTGCTTGAGCTTTACTCTAATCACATCGAAGGAGAAATACCCAA-GG 1097
|| ||||| || | |||||| |||||||| || ||| | |||||||||||| |||| ||
Sbjct 896 CAGGAAACTAACGTCGCTTGAACTTTACTCCAACCACCTTGAAGGAGAAATA-CCAATGG 954
Query 1098 ATATAGGTAAGCTTTCGAAACTGAGTAGCCTCCAACTCCATGTCAATAACCTC-ATGGGT 1156
| |||||||| || || | ||| ||||||| ||||||||| ||||||| || || |||
Sbjct 955 ACATAGGTAACCTCTCCAGCCTGCGTAGCCTTCAACTCCATATCAATAAAATCAAT-GGT 1013
Query 1157 TCTA-TCCCGGTTTCTCTCGCCAATTGCACAAAACTCGTGAAGTTGAATTT-ACGGGTTA 1214
| | ||||| |||||| || ||||| || || ||||| ||||||||||| | |||| |
Sbjct 1014 AC-AGTCCCGCATTCTCTTGCAAATTGTACTAACCTCGTCAAGTTGAATTTGA-GGGTCA 1071
Query 1215 ATCAGCTGGGAGGAA-CTTTATCGGCGATAGACTTTTCCCGGTTTCAGAGCCTCAGCATT 1273
||| ||||||||||| | ||| | | | | || |||| || ||| ||||| || || ||
Sbjct 1072 ATCGGCTGGGAGGAAGC-TTAACAGAGCTCGAGTTTTACCAGTTGCAGAGTCTTAGGGTT 1130
Query 1274 CTGGACCTCGGAAACAATAGCTTCACCGGCGAATTTCCCT-CCACGGTTTACTCATGCAA 1332
|| || ||||||||||||||||||||||| | || ||||| | | ||| ||| ||| |
Sbjct 1131 CTAGATCTCGGAAACAATAGCTTCACCGGTG-ATCTCCCTGATAAGATTTTCTCCTGC-A 1188
Query 1333 AAT-GATGACAGCAATGAGGTTTGCAGGCAACAAGTTAACGGGACAGATATCTCCTCAAG 1391
||| | | || || || || |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1189 AATCGCTCACGGCGATCAGATTTGCAGGCAACAAGTTAACCGGACAGATGTCTCCTCAAG 1248
Query 1392 TACTGGAA-TTGGAATCCCTGTCGT-TCTTTACTTTTTCAGACAATAAAATGACGAACCT 1449
|| ||||| || || |||||||||| | | | ||||||||||||||||| |||||||| |
Sbjct 1249 TATTGGAACTT-GAGTCCCTGTCGTATATGT-CTTTTTCAGACAATAAACTGACGAACAT 1306
Query 1450 TACAGGGGCTCTCAGCATTCTACAAGGCTGCAAGAAGCTT-TCTACTCTCATTATGGCAA 1508
|||||| ||||||||||||||||| || |||| |||| || || ||||| || |||||||
Sbjct 1307 TACAGGAGCTCTCAGCATTCTACAGGGATGCAGGAAG-TTGTCCACTCTAATCATGGCAA 1365
Query 1509 AGAATTTTTACGACGAAACGGTACCAAGCAACA-AAGACTTTCTTCG-GTCAGATGGATT 1566
||||||||||||| ||||| || |||| ||| | ||||||||||| | ||||||||||
Sbjct 1366 AGAATTTTTACGATGAAACAGTTCCAATCAA-AGAAGACTTTCTT-GCCCCAGATGGATT 1423
Query 1567 -TCCAAGCCTCCAAATTTTTGGTATCGGTGCGTGCAGATTGACAGGTGAAATACCAGCTT 1625
|||| |||| ||| ||||| | ||||| || ||||||| |||||||||||||||||
Sbjct 1424 CCCCAA-ACTCCGAATATTTGGCGTAGGTGCATGTAGATTGAAAGGTGAAATACCAGCTT 1482
Query 1626 GGCTGATCAAGCTCCAGAGGGTAGAAGTTATGGACCTGTCCATGAACCGATTCGTGGGGA 1685
||||||| || ||| ||| |||||||| |||||| ||||| ||||||||||| ||||||
Sbjct 1483 GGCTGATTAATCTCAAGAAGGTAGAAGCTATGGATCTGTCAATGAACCGATTTGTGGGGT 1542
Query 1686 CAATTCCTGGTTGGCTAGGAACTCTTCCAGACCTTTTCTACTTGGATCTTTCCGATAACT 1745
||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1543 CAATTCCCGGTTGGTTAGGAACTCTTCCAGACCTTTTCTACTTGGATCTTTCAGATAACC 1602
Query 1746 TTCTAACAGGAGAGCTTCCAAAGGAACTGTTTCAGCTGAGAG-CTCTGATGTCGCAAAAG 1804
| || ||||||||||| ||||||||| | ||||| || || | |||||||||| ||||||
Sbjct 1603 TACTTACAGGAGAGCTGCCAAAGGAAATCTTTCAACTAAG-GTCTCTGATGTCCCAAAAG 1661
Query 1805 GCATACGATGCAACAGA-GCGGAACTATCTGGAGCTGCCGGTTTTTGTCAATCCCAATAA 1863
| ||||| |||||||| | | |||||||| |||||||| |||||| ||||||||| |||
Sbjct 1662 ACCTACGACGCAACAGAAGAG-AACTATCTAGAGCTGCCTGTTTTTCTCAATCCCACTAA 1720
Query 1864 TGTCACCACTAATCAGCAATACAATCAGCTTTCCAGCCTCCCACCTACGATATACATCAA 1923
||| ||||| ||||||||||||||||| || | |||||||||||||||||| |||||||
Sbjct 1721 TGTTACCACCAATCAGCAATACAATCAACTGTACAGCCTCCCACCTACGATTTACATCA- 1779
Query 1924 GA-GGAACAACTTGACTGGGACTATACCAGTCGAGGTTGGGCAGCTAAAGGTTCTCCATA 1982
|| |||| ||||||| |||| |||||||||||||||||| ||| |||||||||| ||||
Sbjct 1780 GAAGGAATTACTTGACAGGGAGTATACCAGTCGAGGTTGGCCAGTTAAAGGTTCTTCATA 1839
Query 1983 TCCTGGAGCTTC-TAGGTAATAATTTTTCTGGCAGCATCCCAGATGAATTGTCAAACCTC 2041
||||||| |||| ||| ||| ||||| ||||||||||||||| ||||| |||||||||||
Sbjct 1840 TCCTGGATCTTCATAG-TAACAATTTATCTGGCAGCATCCCATATGAACTGTCAAACCTC 1898
Query 2042 ACTAACTTAGAGAGGCTGGACCTGTCCAACAACAATCTCTCCGGTAGAATTCCATGGTCA 2101
|| ||| |||||||||||||||||||||||||| || | ||||||||||| || |||||
Sbjct 1899 ACCAACATAGAGAGGCTGGACCTGTCCAACAACTATTTATCCGGTAGAATCCCTTGGTCG 1958
Query 2102 CTCACTGGACTCCA-TTTCCTGTCATATTTCAATGTTGCAAACAACACTCTC-AGTGGGC 2159
| || | || | |||| |||| |||||||| || || ||||||| ||| | ||||
Sbjct 1959 TTAACAAGCCTA-AGTTTCATGTCTTATTTCAACGTGGCGAACAACAGTCTGGAA-GGGC 2016
Query 2160 CGATACCCACAGG-GACCCAGTTTGATACCTTCCCAAAAGCAAATTTTGAAGGAAACCCC 2218
| || |||| ||| | | |||||||||| || ||||||||| |||||||||||||||||
Sbjct 2017 CAATTCCCAGAGGAGGTC-AGTTTGATACATTTCCAAAAGCATATTTTGAAGGAAACCCC 2075
Query 2219 TTGCTGTGCGGTGGTGTACTGCTAACCTCCTGC 2251
||| ||||||||||||||||||| || ||||||
Sbjct 2076 TTGTTGTGCGGTGGTGTACTGCTGACTTCCTGC 2108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137768414260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5