BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72310.1
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476359 jgi|Araly1|476359|fgenesh2_kg.2__1489__AT1G72310.1 2082 0.0
> Ahg476359 jgi|Araly1|476359|fgenesh2_kg.2__1489__AT1G72310.1
Length=1557
Score = 2082 bits (1127), Expect = 0.0
Identities = 1400/1523 (92%), Gaps = 53/1523 (3%)
Strand=Plus/Plus
Query 115 tctttagctacttcctcctccCATAAACCC-TCTACCAAGTAAACTCTCAGCTCCACCAT 173
||||| |||||||||| || ||||||||| | || | | | |||||||||||| |||
Sbjct 51 TCTTTTTCTACTTCCTCTTCTCATAAACCCTTTTAAC-ATTTCCCTCTCAGCTCCATCAT 109
Query 174 TA--ACACAT--CTCGGTCTCAATTCCGAGCTCTGTATTCCAATCCTTTGTTGCATTTAC 229
|| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 110 TATTACACATCACTCGGTCTCAATTCCAAGCTCTGTATTCCAATCCTTTGTTGCATTAAC 169
Query 230 TTTCTGGGTTTTTGTTTATTTTGATTTTCTTCCATTTGGGTACCCACCCAAAGAGTAAAG 289
| |||||| ||||||||| |||| |||||||||||||||||||||| ||||| || ||
Sbjct 170 TCTCTGGGGTTTTGTTTAGTTTGCTTTTCTTCCATTTGGGTACCCA-CCAAA-AG--AA- 224
Query 290 TTTCAAGCTTTCGTGGTACTTGCTATGCTTTCCCTCACAAAACCCT-AATTTCATATC-C 347
| || || || || ||||||||||||||||||||| ||||||||||| |
Sbjct 225 --T-AA--------AGT--TT-CT-TGCTTTCCCTCACAAAACCCTAAATTTCATATCAC 269
Query 348 TTATCCAATTCCATGTTTTGCTCTGCTCAACTCTCTGTTTCTACTTCTGAATCGTCGTTT 407
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 270 -CATCCAATTCCATGTTTTGCTCTGCTCAACTCTCTGTTTCTGCTTCTGAATCATCGTTT 328
Query 408 TCCTTCATATAACCAAACCAATTCTGTTGAATCATCTTGGCACATTCATTGTTTTGAGAA 467
|||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 329 TCCTTCATATAACCAAGCCAATTGTGTTGATTCATCTTGGCACATTCATTGTTTTGAGAA 388
Query 468 GGAACAGAAAAAGTTCTGATCTTGTC-CCTATTCGCACATCAATGGACGATAATAGATCT 526
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 389 GGAACAGAAAAAGTTCTGATCTTGTCTCC--TTCGCACATCAATGGACGATAATGGATCT 446
Query 527 ACTCATAGCTCAATGTTCGGTGACCTATCAACAGAAGAGGTCACAAGTAAGATCATTCTC 586
|||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 447 GCTCATAGCTCAATGTTCGGTGATCTATCAACAGAAGAAGTCACAAGCAAGATCATTCTC 506
Query 587 ACAGCAATCATTGTTCTATTCATGGCGGTTCTGTTCGTCCTTATCCTCCATCTATACGCC 646
|||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct 507 ACAGCAATCATTGTTCTATTCATGGCTGTCCTTTTCGTCCTTATCCTCCATCTTTACGCC 566
Query 647 AAACTCTACTGGTGGAGAATAGATCAGCTCcaacagcaacagcaacaacaacagcaagag 706
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 567 AAACTCTACTGGTGGAGAATAGATCAGCTCC-A-A-CAACAGCAACAACAACAGCAAGAG 623
Query 707 caagagcaagaagaagaCCAATCATCCATTGCTCCACCTGTAGTCACTCGCCGTCAGCGA 766
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 624 CAAGAACAAGAAGAAGACCAATCATCCATTGCTCCGCCTGTAGTCACTCGTCGTCAGCGA 683
Query 767 CGTCGTTTCATCTTCGTCCCAGGCCAAGACGCTCTAAGCAACACTGGACTAACCTCTTTT 826
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 684 CGCCGTTTCATCTTCGTCCCAGGCCAAGACGCTCTATCCAACACTGGACTTACCTCTTTT 743
Query 827 GAACTTAGTTCCTTACCAATTGTGTTTTTCAGACAAGATAGTTGCAAAGATGGTTTGGAA 886
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 744 GAACTCAGTTCCTTACCAATTGTCTTTTTCAGACAAGATAGTTGCAAAGATGGTTTGGAA 803
Query 887 TGCTCTATTTGTTTGTCTGAGCTTGTTAAAGGAGATAAAGCTAGGCTGCTTCCAAAGTGT 946
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 804 TGCTCTATTTGTTTGTCTGAGCTTGTTAAAGGAGATAAAGCAAGGCTGCTTCCAAAGTGT 863
Query 947 AACCATAGCTTCCATGTTGAGTGTATTGACATGTGGTTTCAGTCTCACTCTACTTGTCCG 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AACCATAGCTTCCATGTTGAGTGTATTGACATGTGGTTTCAGTCTCACTCTACTTGTCCG 923
Query 1007 ATTTGTAGAAACACTGTTCTTGGTCCTGAGCAA-GCTAGCTCAAAGAGAGTTGAACAAGT 1065
|||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 924 ATTTGTAGAAACACGGTTCTTGGTCCTGA-CAAAGCTAGCTCAAAGAGAGTTGAACAAGT 982
Query 1066 TCCAGACAATGCAGAAAATGCTGGTACCACCAATAACAACCATGATGCTTTGTCTCAACT 1125
||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct 983 TCCAGACAATGCAGATCATGCTGGTAGCACCAATAACAACCATGATGCTTTGTCACAAAT 1042
Query 1126 TTCAACTTCTTCTCCAGAATTTCCCACCAATGTCTTGGTATGGGGTCGTCAGGATCAAGT 1185
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1043 TTCAACTTCTTCTCCGGAATTTCCCACCAATGTCTTGGTATGGGGTCGCCAGGATCAGGT 1102
Query 1186 TAGTACCGGAAACACCAATGTTGGGACTCAAGAAGACGGTGCTGCTGGTAATGGTGCTTC 1245
|||||||||||||| |||||| ||| ||||||||||| ||| ||||||||||||||||||
Sbjct 1103 TAGTACCGGAAACAACAATGTCGGGCCTCAAGAAGACAGTGTTGCTGGTAATGGTGCTTC 1162
Query 1246 TCAGAGTCAAGAAGCTGTTGTTCTGGATATCAGCGATTCTTCCAGTAGA-AA-TCATAAT 1303
|||||||||||||||||||||||||||||||| |||||||||| || | || ||| |||
Sbjct 1163 TCAGAGTCAAGAAGCTGTTGTTCTGGATATCAATGATTCTTCCA-TA-ACAAGTCAGAAT 1220
Query 1304 GTATCATCTTCGTCGTCATCTATGAGGTTTATTGTTGAGGAGGAAGAAGCAAAATCTCCA 1363
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1221 GTATCATCTTCGTCGTCATCGATGAGGTTTATTGTTGAGGAGGACGAAGCAAAATCTCCA 1280
Query 1364 ATGACAACGAGGTTGAGGTCCTTAAGGAGGTTTCTGAGCAGAGACAAGAGAGTGGGTTGT 1423
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||| ||||
Sbjct 1281 ATGACAACGAGGTTGAGGTCTTTAAGGAGGTTTTTAAGCAGAGACAAGAGAGTGGCTTGT 1340
Query 1424 AGCAATAGTAGTACTAGTA--A-TAGTAGCAGCTCCAATGCTGTTGCTTCTGTTGATCCT 1480
|||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1341 AGCAGTAGTAGTACTAGTAGTAGTAGTAGCAGCTCCAATGCTGTTGCTTCTGTTGATCCT 1400
Query 1481 TGAAGATTGT-A--A-TTA---GCTTAGCTGAGTGAGATTGCCTGAAGATGTCAAACTGT 1533
|||||||||| | | ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1401 TGAAGATTGTTATTACTTATTAGATTAGCTGAGTGAGATTGCCTGAAGATGTCAAACTGT 1460
Query 1534 GTGTATGTGGTCTCGGCTCTTTATTGGCTGTGTTTGAGAGCTTTCTTTGTCATCCAAGTA 1593
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1461 GT--ATGTGGTCTCGGCTCTTTATTGGCTGTGTTTGAGAGCTTTCTTTGTCATCCAAGCA 1518
Query 1594 AATCATTTATCTATTCCACGGGT 1616
|||||||||| ||||||||||||
Sbjct 1519 AATCATTTATGTATTCCACGGGT 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61820467635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5