BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72320.1
Length=2535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476360 jgi|Araly1|476360|fgenesh2_kg.2__1490__AT1G72320.1 3877 0.0
> Ahg476360 jgi|Araly1|476360|fgenesh2_kg.2__1490__AT1G72320.1
Length=2390
Score = 3877 bits (2099), Expect = 0.0
Identities = 2296/2393 (96%), Gaps = 5/2393 (0%)
Strand=Plus/Plus
Query 40 TCTCTGCGCCGCGTTCT-TAGTCTGAGCTCACGCTTGTTCGTTTCTCCTCTAACGTCAAC 98
||||||||||||||||| | || ||||||||||||| |||||||||||||| ||||||||
Sbjct 1 TCTCTGCGCCGCGTTCTCT-GT-TGAGCTCACGCTTCTTCGTTTCTCCTCTTACGTCAAC 58
Query 99 TGTGTTTTTGCATCCTCAAAGGGTTTAACATAGTTGGGGCTAGGAATTTTCATGGTTTCT 158
||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 59 TGTGTTTTTGCATACTCAGAGGGTTTAACATAGTTGGGGCTAGGAATTTACATGGTTTCA 118
Query 159 GTTGGTTCTAAATCATTGCCATCTAGGAGGCACAGGACCATTGAGGAAGATAGCTTGATG 218
|||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 119 GTTGGTTCTAAATCATTGCCATCTAGGAGGCACAGGACTATTGAGGAAGATTGCGTGATG 178
Query 219 GGTGAACGAGGAAAGTCTAGTAACAATCACAGTGAAAGGAATAAGGGAATGCGTAGGAAG 278
|||||||| ||||||||||||||||||||| | |||||||| ||||||||||| ||||||
Sbjct 179 GGTGAACGGGGAAAGTCTAGTAACAATCACGGCGAAAGGAAGAAGGGAATGCGAAGGAAG 238
Query 279 GACCATAAGGGTAACCGTGGATTTGATGTAGATAGCAGCAAGAAGAACCAATCCGGTGGT 338
|||||||| || |||||||||||||| |||||||| ||||| ||| ||||| ||||||
Sbjct 239 GACCATAAAAGTGGCCGTGGATTTGATGGAGATAGCAACAAGAGGAATCAATCTGGTGGT 298
Query 339 GCCCCCAATGTAAAGCCAGCATCAAAGAAACACTCCGAATTCGAACATCAGAATCAATTT 398
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 GCCCCCAATGTAAAGCCAGCATCAAAGAAACAATCCGAATTCGAACATCAGAATCAATTT 358
Query 399 GTCAGGAAAGAGATTGATCCAGAGACTTCAAAGTATTTCTCTGAGATTGCCAATCTCTTT 458
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 359 GTCAGGAAAGAGATTGATCCAGAAACTTCAAAATATTTCTCTGAGATTGCCAATCTCTTT 418
Query 459 GATAGTAATGAAGTTGAATTAGAGGAACGTTCAGTAATATGTGGAAATGCCCTTGAAGAA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GATAGTAATGAAGTTGAATTAGAGGAACGTTCAGTAATATGTGGAAATGCCCTTGAAGAA 478
Query 519 ACAAGAGGGAGGGAGTATGAAATTGCTACAGACTATATCATAAGTCATGTCTTGCAAACT 578
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 ACAAGAGGGAGGGAATACGAAATTGCAACAGACTATATCATAAGTCATGTCTTGCAAACT 538
Query 579 CTACTTGAGGGATGTGAACTTGACCAACTCTGCAGTTTCATACGAAATTCTGCTAGTGTG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 539 CTACTTGAGGGATGTGAACTTGACCAACTCTGCAGTTTCATACGAAATTCTGCAACTGTG 598
Query 639 TTCCCAGCCATTGCAATGGATAGATCTGGTTCTCATGTCGCAGAGTCTGCTCTCAAATCC 698
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 599 TTCCCAGCCATTGCAATGGATAGATCTGGTTCTCATGTTGCAGAGTCTGCTCTCAAATCC 658
Query 699 TTGGCCACACATCTAGAAAATCCAGACGCCTATTCTGTTATTGAGGAGGCTTTGCATTCT 758
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 659 TTGGCCACACATCTTGAAAATCCAGATGCCTATTCTGTTATTGAGGAGGCATTGAATTCT 718
Query 759 ATATGCAAGGTGATTGTGGATAATCCTCTTGATATGATGTGCAACTGCTATGGTTCGCAT 818
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 ATATGCAAGGTGATTGTGGATAATCCTCTTGATATGATGTGCAACTGCTATGGTTCTCAT 778
Query 819 GTACTACGAAGGCTTCTTTGTCTTTGCAAAGGAGTCTCTTTAGATTCCCCTGAGCTTTAT 878
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 779 GTTCTTCGAAGGCTTCTTTGTCTTTGCAAAGGAGTCTCTTTAGATTCTCCTGAGCTTTAT 838
Query 879 GGCGCAAAATCATCAAAAGCTCTGGCCAAACGTTTGAATCTGAAGATGTCTCAGCTAGAT 938
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 839 GGCGCAAAATCATCAAAAGCTCTGGCCAAACGTTTGAATCTGAAGATGTCTCAGTTGGAT 898
Query 939 GACAATAATTTAGAAATCCCTCATCAAGGGTTTCCAGGTATGCTCACGTACCTTTTATCT 998
||||||| | ||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 899 GACAATACTCTAGAACTCCCTCATCAAGGGTTTCCAGATATGCTCAAGTACCTTTTATCT 958
Query 999 GGGCTATTAAGTTGTAGCAGAGAGGACATGAAGTATCTTCAAGTCGATCAGTATAGCAGT 1058
||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 959 GGGATATTAAATTGTAGCAGAGAGGATATGAAGTATCTTCAAGTCGATCAGTATAGCAGT 1018
Query 1059 TTGGTCTTACAGACGGCTCTCAGACTAATGCTGAAACAAGATGAGCAGTTGCTTGAAATC 1118
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1019 TTGGTCTTACAGACGGCTCTCAGACTAATGCTGAAACAAGATGAGGAGTTGCTTGAAATC 1078
Query 1119 ATTCCGCTTATTCTGCGCTGCAACTCTACTAATAAAAAAGTAGAAGGGTTTCATATAGAG 1178
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 ATTCCACTTATTCTGCGCTGCAACTCTACTAATAAAAAAGTAGAGGGGTTTCATATAGAG 1138
Query 1179 ACTAATGTTGCCAAAGAAATTTTAGAGTCGATGAAGGATAATTCATTCAGTCATCTGGTG 1238
||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 1139 ACTAATGTTGCCAAAGAAATTTTAGTGTCAATGAAGGATAATTCATTTAGTCATCTGGTG 1198
Query 1239 GAGGTTATTTTGGAAGTGGCCCCTGAAAGTTTGTATAACGAAATGTTCAACAAAGTTTTC 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAGGTTATTTTGGAAGTGGCCCCTGAAAGTTTGTATAACGAAATGTTCAACAAAGTTTTC 1258
Query 1299 AAGAATTCTTTATTTGAGCTTTCAGTTGATCGGTGTGCAAATTTTGTTATTCAAGCATTA 1358
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1259 AAGAATTCTTTATTTGAGCTTTCAGTTGATCGGTGTGCAAATTTTGTTATCCAAGCATTA 1318
Query 1359 ATCTCCCATGCAAGAGACCAAGAGCAGATGGGTATTATGTGGGAAGAATTAGCTCCAAGA 1418
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1319 ATCTCCCATGCAAGAGACCAAGAGCAGATGGGCATGATGTGGGAAGAATTAGCTCCAAGA 1378
Query 1419 TTCAAGGATCTTCTTGAGCAAGGGAAGTCAGGTGTTGTGGCTTCTCTGATAGCAGTTAGC 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1379 TTCAAGGATCTTCTTGAGCAAGGGAAGTCAGGTGTTGTGGCTTCTCTGATAGCGGTTAGC 1438
Query 1479 CAAAGGCTTCAAAGTCATGAAAATAAGTGTTGTGAGGCCCTTGTTGGTGCAGTATGCTCC 1538
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CAAAGGCTTCAAAGTCATGAACATAAGTGTTGTGAGGCCCTTGTTGGTGCAGTATGCTCC 1498
Query 1539 ACAAATGAATCCCGTATCTCCATTCTTCCACGGTTGCTGTTTCTTGATTACTACTTTGGT 1598
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1499 ACAAATGAATCCCGTATCTCCATTGTTCCACGGTTGCTGTTTCTTGATTACTACTTTGGT 1558
Query 1599 TGTCGAGATAAGTCTACATGGGAGTGGGCACCTGGTGCAAAGATGCATGTCATGGGTTGT 1658
|| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TGCCAAGATAAATCTGCATGGGAGTGGGCACCTGGTGCAAAGATGCATGTCATGGGTTGT 1618
Query 1659 TTGATACTTCAGGGGATTTTTAAGTTTTCTAGTGATCATATACAGCCATACATAACAAGC 1718
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1619 TTGATCCTTCAGGGGATTTTCAAGTTTTCTAGCGATCATATACAGCCATACATAACAAGC 1678
Query 1719 TTAACTTCTATGAAAGCTGAGTATATCACTGAAACGGCAAAAGATTCCAGTGGAGCACGT 1778
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1679 TTAACTTCTATGAAAGCTGAGTATATCACTGAAACAGCAAAAGATTCCAGTGGAGCACGT 1738
Query 1779 GTCATCGAGGCCTTTCTTGCCTCAGATGCTGCTACAAAACAGAAACGTAGACTAATTATA 1838
|||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1739 GTCATCGAGGCCTTTCTTACCTCAAATGCTGCTACAAAACAGAAACGCAGACTAATTATA 1798
Query 1839 AAATTACGTGGACATTTTGGCGAGCTCTCATTACACACGTCTGGTTCATTTACAGTTGAG 1898
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1799 AAGTTACGTGGACATTTTGGCGAGCTCTCATTACACACATCTGGTTCATTTACAGTTGAG 1858
Query 1899 AAGTGCTTCGATGCATGTAATTTGACACTAAGGGAAGCCATAGCATCTGAACTGTTGGAT 1958
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1859 AAGTGCTTCGATGCATGTAATTTGACACTAAGGGAAGCCATAGCAACTGAACTGTTGGAT 1918
Query 1959 GTGAAAGTTGATCTCTCGAAAACAAAGCAAGGGCCTTATCTGCTTAGGAAACTTGATATC 2018
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1919 GTGAAAGTTGATCTCTCGAAAACAAAGCAAGGGCCTTATCTGCTAAGGAAACTTGATATC 1978
Query 2019 GATGGTTATGCCAGCAGACCTGATCAGTGGAAATCAAGACAAGAAGCTAAGCAATCAACA 2078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 GATGGTTATGCCAGCAGACCTGATCAGTGGAAATCAAGACAAGAAGCTAAGCAATCAACA 2038
Query 2079 TATAACGAATTTTGCTCTGCATTTGGGTCCAACAAATCAAATTTTCCAAAGAACACCTTT 2138
|||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2039 TATAACGACTTTTGTTCTACATTTGGGTCCAACAAATCAAATTTTCCAAAGAACACATTT 2098
Query 2139 GTCTCTGACGCATCTGAGGATGCAGCTCAGGAAATAGAAGTAAAGAATACAAGGAAAGAG 2198
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2099 GTCTCTGACACATCTGAGGATGCATATCAGGAAATAGAAGTAAAGAATACAAGGAAAGAG 2158
Query 2199 ATTGACCATCATCCTACTTCCGGGTTTAAGCGTCACCGAGAAAAACATGCAAAGGATAAG 2258
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 2159 ATTGACCATCATCCTACCTCTGGGTTTAAGCGTCACCGAGAAGAACATGCAAAGGATAAG 2218
Query 2259 GATGAACCTTTTGCAGGTGAAAAAAG-ATCGAAACAGAAGAAGAATAAAACTAGTGAAGC 2317
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 2219 GATGAACCTTTTGCAGGTGAAAAAAGGA-CAAAACAGAAGAAGAATAAAACTAGTGAAGC 2277
Query 2318 AACAGATAAACCAAAACTAGCTGGCAGCAAAAGACCTTTCCTTTCTGGTGAGATGACTGG 2377
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2278 AACAGATAAACCAAAACTAGCTGGCAGCAAAAGACCTTTCCTTTCTGGCGAGATGACTGG 2337
Query 2378 AAAGAATCGGCATTCAAATAAAATGAGAATTTGAAGGTTAGACTCCTTACTCT 2430
||||||| |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2338 AAAGAATAGGCATTCAAATAAATTGAGAATCTGAAGGTTAGACTCCTTACTCT 2390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95568424705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5