BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72330.3
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476362 jgi|Araly1|476362|fgenesh2_kg.2__1492__AT1G72330.1 1910 0.0
Ahg920646 jgi|Araly1|920646|scaffold_101927.1 1099 0.0
Ahg925252 jgi|Araly1|925252|scaffold_200813.1 361 1e-98
> Ahg476362 jgi|Araly1|476362|fgenesh2_kg.2__1492__AT1G72330.1
Length=1947
Score = 1910 bits (1034), Expect = 0.0
Identities = 1157/1215 (95%), Gaps = 13/1215 (1%)
Strand=Plus/Plus
Query 829 GTTCACATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTCCCCGATT 888
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 738 GTTCATATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTGCCCAATT 797
Query 889 CCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATGGTGGATCTTTGGTTCCGTAC 948
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 798 CCTCAGTATCCATTGTACTCTGCTTCAATTGCTCTTCATGGTGGATCTTTGGTTCCGTAC 857
Query 949 TATCTTGATGAAGCAACAGGATGGGGACTGGAAATATCTGACCTTAAGAAGCAACTAGAG 1008
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 858 TATCTTGATGAAGCAACCGGATGGGGACTGGAAATATCTGACCTTAAGAAGCAACTGGAG 917
Query 1009 GAAGCTAGGTCCAAGGGCATCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCA 1068
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 918 GAAGCTAGGTCGAAGGGCATCGCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCA 977
Query 1069 ACTGGGCAGGTTCTTGCGGAAGAAAACCAGCGTGACATTGTTAATTTCTGCAAGCAAGAG 1128
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 978 ACTGGGCAGGTTCTTGCTGAAGACAACCAGCGTGACATTGTTAATTTCTGCAAGCAAGAG 1037
Query 1129 GGTTTGGTTCTTTTAGCTGATGAAGTCTACCAAGAAAATGTTTACGTCCCTGACAAAAAG 1188
||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1038 GGTTTAGTTCTTTTAGCTGACGAGGTCTACCAAGAAAATGTTTACGTACCTGACAAAAAG 1097
Query 1189 TTCCATTCTTTCAAGAAAGTGGCTCGGTCTTTGGGCTATGGAGAAAAAGATATCTCGTTA 1248
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 1098 TTCCATTCTTTCAAGAAAGTAGCTCGGTCTTTGGGCTATGGCGAAAAGGATATCTCGTTA 1157
Query 1249 GTCTCGTTCCAATCAGTCTCCAAAGGATATTATGGAGAATGTGGAAAAAGAGGAGGTTAC 1308
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1158 GTCTCGTTCCAATCAGTTTCCAAAGGTTACTATGGAGAATGTGGAAAAAGAGGAGGTTAC 1217
Query 1309 ATGGAGGTTACTGGATTCACTTCTGATGTAAGAGAACAGATATACAAAATGGCTTCTGTG 1368
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 ATGGAGGTTACCGGATTCACTTCTGATGTAAGAGAACAGATATACAAAATGGCTTCTGTG 1277
Query 1369 AATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCCAAG 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 AATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCCAAG 1337
Query 1429 CCTGGTGATGACTCATATGACTCATACATGGCAGAAAGAGATGGAATTCTCTCATCCATG 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 CCTGGTGATGACTCATATGACTCATACATGGCAGAAAGAGATGGAATTCTCTCATCCATG 1397
Query 1489 GCTAAACGTGCAAAGACTTTGGAAGACGCTCTCAACAGTTTAGAAGGTGTTACATGTAAC 1548
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1398 GCTAAACGTGCAAAGACTTTGGAAGACGGTCTCAACAGTTTAGAAGGTGTTACATGTAAC 1457
Query 1549 AGAGCCGAAGGAGCAATGTATCTCTTCCCGCGAATTAACCTTCCTCAAAAGGCTATCGAA 1608
||||| |||||||| |||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 1458 AGAGCGGAAGGAGCGATGTATCTCTTCCCGCGAATTAGCCTTCCTCAAAAGGCGATTGAA 1517
Query 1609 GCTGCTGAGGCTGAAAAAACTGCACCAGATGCGTTCTACTGCAAACGCCTTCTCAATGCT 1668
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1518 GCTGCTGAGGCCGAAAAAACTGCGCCAGATGCTTTCTACTGCAAACGCCTTCTCAATGCT 1577
Query 1669 ACTGGTGTAGTTGTAGTCCCTGGTTCTGGCTTTGGACAGGTTCCTGGAACATGGCACTTT 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 ACTGGTGTAGTTGTAGTCCCTGGTTCTGGCTTTGGACAGGTTCCTGGAACATGGCACTTT 1637
Query 1729 AGATGCACAATACTTCCACAAGAAGACAAGATTCCAGCGATAGTGAATCGTCTGACAGAG 1788
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1638 AGATGCACAATACTTCCACAAGAAGACAAGATTCCGGCGATAGTGAATCGTCTCACAGAG 1697
Query 1789 TTCCACAAGAGCTTCATGGACGAGTTCCGCAACTAAAAGGACCTGACCATGAAGATGAAC 1848
|||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct 1698 TTCCACAAGAGCTTCATGGACGAGTTCCGCGACTAAAAA-ACCTGACCATGATGATGAAC 1756
Query 1849 TTAAAGACCCTTTTGAAGAAAAGTGTGATCAGTTTGAGTTATT-aaaaaaaaGAA-AA-- 1904
||||||||| |||||| |||||||||||||||||||||||||| |||||||| || ||
Sbjct 1757 TTAAAGACC-TTTTGA-GAAAAGTGTGATCAGTTTGAGTTATTTAAAAAAAA-AAGAAGG 1813
Query 1905 CTTGTGTTTTGAATTTGATCAGGCAATTGTGATCAGCTAATTTAATTTTAGAATATTTTG 1964
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1814 CTTATGTTTTGAATTTGATCAGGCAATTGTGGTCAGCTAATTTAATTTTAGAATATTTTG 1873
Query 1965 TACTTCCATTCCATGGCA-TGTCA--TATGAAGATATGAAAATT-AGTAAATTTATTGGG 2020
|||| |||| |||| || | | | |||||||||||||||||| |||||||||||||||
Sbjct 1874 TACT-CCATGGCATGCCAATTTAAGATATGAAGATATGAAAATTGAGTAAATTTATTGGG 1932
Query 2021 CTTATAAATGGGCCT 2035
||| | |||||||||
Sbjct 1933 CTTTTTAATGGGCCT 1947
Score = 1109 bits (600), Expect = 0.0
Identities = 713/763 (93%), Gaps = 26/763 (3%)
Strand=Plus/Plus
Query 31 ATTTCTGAGCGTGGAGGACAAGGCAAAATTCGGTG--TGCAAGGCACTGGATATTGGGAC 88
|||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1 ATTTTTGAGCGTGGAGGACAAGGCAAAATTCGGTGTTTGC-AGGCACTGGATATTGGGAC 59
Query 89 CCTTGTTTCCTCGTGAGAGAATTTTCAATCCTAGGGCTTAAAGAGCACGTTCCTAGTATA 148
|||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||
Sbjct 60 CCTTGTTTCCTCGTGAGAGAATTTTCAATCTTGGGGCTTGAAGAGCACGTTCCTACCATA 119
Query 149 AAGCTGATTCACAGATGCGGAGATTCTTGATTAACCAAGCTAAAGGTCTCGTCGACCATT 208
|| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AA---G-----CAGATGCGGAGATTCTTGATTAACCAAGCTAAAGGTCTCGTCGACCATT 171
Query 209 CTCGTCGTCAACATCACCACAAAAGTCCAAGctttctctctcctcaacctcgtccccttg 268
|||||||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 172 CTCGTCGTCAACAT---CACAAAAGTCCAAGCTTTCTCTCTCCTCAATCTCGT---C--- 222
Query 269 cttcttctcctcctgctctgtctcgtttcttctcttctacttcggagatgtctgcttctg 328
| || | | | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 C-TC-T-T-GT-CT-CTCTGTCTCGTTTCTTCTCTTCTACTTCGGAGATGTCTGCTTCTG 276
Query 329 attccacttcttctcttcCCGTTACTCTTGACTCCATCAATCCCAAGGTTCTGAAATGTG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 ATTCCACTTCTTCTCTTCCCGTTACTCTTGACTCCATCAATCCCAAGGTTCTGAAATGTG 336
Query 389 AGTATGCTGTTCGAGGAGAAATTGTCAACATTGCTCAGAAGTTACAAGAAGACTTGAAGA 448
||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 337 AGTATGCTGTTCGTGGAAAAATTGTCAACATTGCTCAGAAGTTGCAAGAAGACTTGAAGT 396
Query 449 CTAATAAGGATGCTTATCCCTTTGATGAGATAATCTATTGCAACATTGGGAATCCTCAAT 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CTAATAAGGATGCTTATCCCTTTGATGAGATAATCTATTGCAACATTGGGAATCCTCAAT 456
Query 509 CTCTTGGTCAGCTGCCTATAAAGTTCTTCCGTGAGGTTCTCGCATTGTGTGACCACGCAA 568
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 457 CTCTTGGTCAACTGCCTATAAGGTTCTTCCGAGAGGTTCTCGCATTGTGTGACCACGCAA 516
Query 569 GTCTTTTGGATGAGTCTGAAACCCATGGTTTGTTCAGTACCGATTCAATTGACCGAGCAT 628
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 517 GCCTTTTGGATGAGTCTGAAACACATGGTTTGTTCAGTACCGATTCAATTGACCGAGCAT 576
Query 629 GGAGGATTTTGGACCATATTCCCGGAAGAGCAACTGGGGCTTACAGTCATAGCCAGGGTA 688
||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 577 GGAAGATTTTGGACCAAATTCCCGGAAGAGCAACTGGTGCTTACAGTCACAGCCAGGGTA 636
Query 689 TCAAGGGTTTACGTGATGTAATTGCAGCTGGAATCGAAGCACGTGATGGTTTCCCTGCTG 748
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 637 TCAAGGGATTACGTGATGTAATTGCAGCTGGAATCGAAGCACGTGATGGCTTCCCCGCTG 696
Query 749 ATCCAAATGATATTTTCTTGACTGATGGTGCAAGTCCAGCGGT 791
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 ATCCAAATGATATTTTCTTGACTGATGGTGCAAGTCCAGCGGT 739
> Ahg920646 jgi|Araly1|920646|scaffold_101927.1
Length=1671
Score = 1099 bits (595), Expect = 0.0
Identities = 873/1007 (87%), Gaps = 20/1007 (2%)
Strand=Plus/Plus
Query 829 GTTCACATGATGATGCAACTTCTCTTGAGC-TCAGAGAAAGATGGTATTCTTTCCCCGAT 887
||||| |||||||||||||||||| | | | |||||||||||||| || |||| ||| ||
Sbjct 654 GTTCATATGATGATGCAACTTCTCAT-AACTTCAGAGAAAGATGGAATCCTTTGCCCTAT 712
Query 888 TCCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATGGTGGATCTTTGGTTCCGTA 947
||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||| ||
Sbjct 713 TCCTCAGTACCCATTGTACTCAGCTTCAATTGCCCTTCACGGTGGAACTTTGGTTCCATA 772
Query 948 CTATCTTGATGAAGCAACAGGATGGGGACTGGAAATATCTGACCTTAAGAAGCAACTAGA 1007
||| |||||||||||| |||||||||| || ||||||||||| || ||||||||||| ||
Sbjct 773 CTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAGCTAAAGAAGCAACTTGA 832
Query 1008 GGAAGCTAGGTCCAAGGGCATCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCC 1067
|| |||||||| ||||| ||| |||| || || |||| |||||| ||||| || |||||
Sbjct 833 AGATGCTAGGTCAAAGGGGATCACTGTGAGAGCTTTGGCTGTCATTAACCCTGGAAACCC 892
Query 1068 AACTGGGCAGGTTCTTGCGGAAGAAAACCAGCGTGACATTGTTAATTTCTGCAAGCAAGA 1127
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GACAGGGCAGGTTCTTGCGGAAGAAAACCAGCGTGACATTGTTAATTTCTGCAAGCAAGA 952
Query 1128 GGGTTTGGTTCTTTTAGCTGATGAAGTCTACCAAGAAAATGTTTACGTCCCTGACAAAAA 1187
|||||| ||||||||||| || || || || ||||||||||| || ||||||||||||||
Sbjct 953 GGGTTTAGTTCTTTTAGCAGACGAGGTTTATCAAGAAAATGTGTATGTCCCTGACAAAAA 1012
Query 1188 GTTCCATTCTTTCAAGAAAGTGGCTCGGTCTTTGGGCTATGGAGAAAAAGATATCT-CGT 1246
||||||||| ||||||||||| || || ||| ||||||| || || || ||| | | | |
Sbjct 1013 GTTCCATTCCTTCAAGAAAGTAGCCCGCTCTATGGGCTACGGTGAGAAGGATCT-TGCCT 1071
Query 1247 TAGTCTCGTTCCAATCAGTCTCCAAAGGATATTATGGAGAATGTGGAAAAAGAGGAGGTT 1306
||||||| |||||||| ||||||||||| || |||||||| ||||| |||||||| ||||
Sbjct 1072 TAGTCTCTTTCCAATCTGTCTCCAAAGGTTACTATGGAGAGTGTGGGAAAAGAGGTGGTT 1131
Query 1307 ACATGGAGGTTACTGGATTCACTTCTGATGTAAGAGAACAGATATACAAAATGGCTTCTG 1366
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1132 ACATGGAGGTTACTGGATTCACTTCTGATGTAAGAGAGCAGATATACAAAATGGCTTCTG 1191
Query 1367 TGAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCCA 1426
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1192 TGAATCTTTGTTCCAACATCTCTGGTCAAATTCTTGCTAGCCTCATCATGAGCCCACCCA 1251
Query 1427 AGCCTGGTGATGACTCATATGACTCATACATGGCAGA-AAGAGATGGAATTCTCTCATCC 1485
|||||||||| ||||| || || |||||||| ||||| ||| |||||||||||||||||
Sbjct 1252 AGCCTGGTGACGACTCCTACGAATCATACATAGCAGAGAAG-GATGGAATTCTCTCATCT 1310
Query 1486 ATGGCTAA-ACGTGCAAAGACT-TTGGAAGACGCTCTCAACA-GTTTAGAAGGTGTTACA 1542
| || || |||||| |||||| ||| |||| || || |||| | | ||| |||||||||
Sbjct 1311 TTAGC-AAGACGTGCGAAGACTCTTG-AAGAGGCGCTGAACAAGCT-AGAGGGTGTTACA 1367
Query 1543 TGTAACAGAGCCGAAGGAGCAATGTATCTCTTCCCGC-GAATTAACCTTCCTCAAAAGGC 1601
|| || ||||| |||||||| |||||||| ||||| | | || ||||||| ||||||||
Sbjct 1368 TGCAATAGAGCGGAAGGAGCTATGTATCTATTCCC-CTGCCTTCACCTTCCACAAAAGGC 1426
Query 1602 TATCGAAGCTGCTGAGGCTGAAAAAACTGCACCAGATGCGTTCTACTGCAAACGCCTTCT 1661
|| | |||||| ||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct 1427 GATTGCAGCTGCAGAGGCGGAAAAGACAGCACCAGACAATTTCTACTGCAAACGCCTTCT 1486
Query 1662 CAATGCTACTGGTGTAGTTGTAGTCCCTGGTTCTGGCTTTGGACAGGTTCCTGGAACATG 1721
|| |||||||| |||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1487 AAAAGCTACTGGAATAGTCGTAGTCCCTGGTTCTGGCTTTAGACAGGTACCTGGAACATG 1546
Query 1722 GCACTTT-AGATGCACAATACTTCCACAAGAAGACAAGATTCCAGCGATAGT-GAATCGT 1779
||| ||| || ||||| |||||||| ||||| || |||||||||||||| || || ||||
Sbjct 1547 GCA-TTTCAGGTGCACTATACTTCCCCAAGAGGATAAGATTCCAGCGATTGTTGA-TCGT 1604
Query 1780 CTGACAG-AGTTCCACAAGAGCTTCATGGACGAGTTCCGCAACTAAA 1825
|| || | | |||||| ||||||||||||||||||||||| ||||||
Sbjct 1605 CTAACTGCA-TTCCACGAGAGCTTCATGGACGAGTTCCGCGACTAAA 1650
Score = 592 bits (320), Expect = 5e-168
Identities = 544/650 (84%), Gaps = 24/650 (4%)
Strand=Plus/Plus
Query 157 TCACAGATGCGGAGATTCTTGATTAACCAAGCTAAAGGTCTCGTCGA-C-CATTC-TCGT 213
||||| |||||||||||| ||||| ||||||||| |||| | || | | || ||||
Sbjct 15 TCACAAATGCGGAGATTCGTGATTGGTCAAGCTAAAAATCTCATAGATCAGAGTCGTCGT 74
Query 214 CGTCAAC--A-TCACCACAAAAGTC-CAAGctttctctctcctcaacct-cgtccccttg 268
||||||| | ||| ||||||| || | ||||||||||||| || ||| | | | ||
Sbjct 75 CGTCAACATATTCATCACAAAAATCTC-AGCTTTCTCTCTCTTCTTCCTCCTTTTTC-TG 132
Query 269 cttcttctc-ctcctgc-tc-tgtctcgtt-tcttctcttctacttcggagatgtctgct 324
|| |||| | | || | || | | | || || | |||||| |||||||||||||||||
Sbjct 133 CTCCTTC-CGATTCTTCATCGCGCCAC-TTGTC-T-TCTTCTTCTTCGGAGATGTCTGCT 188
Query 325 tctgattccacttcttctcttcCCGTTACTCTTGACTCCATCAATCCCAAGGTTCTGAAA 384
||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 189 TCTGATTCCTCTTCCTCTCTTCCCGTTACTCTTGACTCCATCAATCCCAAGGTTATCAAA 248
Query 385 TGTGAGTATGCTGTTCGAGGAGAAATTGTCAACATTGCTCAGAAGTTACAAGAAGACTTG 444
|||||||||||||| || ||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 249 TGTGAGTATGCTGTCCGTGGAGAAATTGTCAACATTGCTCAGAGGTTGCAAGAAGATTTG 308
Query 445 AAGACTAATAAGGATGCTTATCCCTTTGATGAGATAATCTATTGCAACATTGGGAATCCT 504
|||||||| |||||||||||||||||||||||||||||||| || || || |||||||||
Sbjct 309 AAGACTAACAAGGATGCTTATCCCTTTGATGAGATAATCTACTGTAATATCGGGAATCCT 368
Query 505 CAATCTCTTGGTCAGCTGCCTATAA-AGTTCTTCCGTGAGGTTCTCGCATTGTGTGACCA 563
|||||||||||||| | |||||||| | |||||| | |||||||| || || ||| |||
Sbjct 369 CAATCTCTTGGTCAACAGCCTATAACA-TTCTTCAGAGAGGTTCTTGCTTTATGTTCCCA 427
Query 564 CGCAAGTCTT-TTGGATGAGTCTGAAACCCATGGTTTGTTCAGTACCGATTCAATTGACC 622
| || | | | ||||| ||| || ||| || |||||||||||| | ||||||||||| |
Sbjct 428 CACA-GCCCTGTTGGACGAGAGTGCAACACACGGTTTGTTCAGTTCTGATTCAATTGAGC 486
Query 623 GAGCATGGAGGATTTTGGACCATATTCCCGG-AAGAGCAACTGGGGCTTACAGTCATAGC 681
| || |||| |||| ||||||| |||||||| || ||| ||||| |||||||| || |||
Sbjct 487 GTGCTTGGAAGATTCTGGACCAAATTCCCGGGAA-AGCGACTGGTGCTTACAGCCACAGC 545
Query 682 CAGGGTATCAAGGGTTTACGTGATGTAATTGCAGCTGGAATCGAAGCACGTGATGGTTTC 741
|||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 546 CAGGGTATCAAGGGGTTACGTGATGCAATTGCTGCTGGAATCGAAGCCCGTGATGGTTTC 605
Query 742 CCTGCTGATCCAAATGATATTTTCTTGACTGATGGTGCAAGTCCAGCGGT 791
||||||||||| |||||||| ||| |||| ||||||||||| |||| |||
Sbjct 606 CCTGCTGATCCTAATGATATATTCATGACAGATGGTGCAAGCCCAGGGGT 655
> Ahg925252 jgi|Araly1|925252|scaffold_200813.1
Length=901
Score = 361 bits (195), Expect = 1e-98
Identities = 233/252 (92%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 829 GTTCACATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTCCCCGATT 888
|||||||||||||||||||||||| | ||||||||||||||||| ||||| | || ||||
Sbjct 435 GTTCACATGATGATGCAACTTCTCATAAGCTCAGAGAAAGATGGAATTCTCTGCCTGATT 494
Query 889 CCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATGGTGGATCTTTGGTTCCGTAC 948
|||||| |||||||||| || ||||||||| |||| |||||||||||| |||||||||||
Sbjct 495 CCTCAGAATCCATTGTATTCTGCTTCAATTACCCTCCATGGTGGATCTCTGGTTCCGTAC 554
Query 949 TATCTTGATGAAGCAACAGGATGGGGACTGGAAATATCTGACCTTAAGAAGCAACTAGAG 1008
||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||
Sbjct 555 TATCTTGATGAAGCAACAGGATGGGGACTGGAAATATCTAACGTTAAGAAGCAACTGGAG 614
Query 1009 GAAGCTAGGTCCAAGGGCATCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCA 1068
||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 615 GAAGCTAGGTCGAAGGGCATCACTGTAAGAGCCTTGGTTGTCATAAACCCCGGTAACCCA 674
Query 1069 ACTGGGCAGGTT 1080
|| |||||||||
Sbjct 675 ACAGGGCAGGTT 686
Score = 287 bits (155), Expect = 2e-76
Identities = 184/198 (93%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 1307 ACATGG-AGGTTACTGGATTCACTTCTGATGTAAGAGAACAGATATACAAAATGGCTTCT 1365
||| || ||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct 675 ACAGGGCAGGTTACCGGATTCACTCCTGATGTCAGAGAACAAATATACAAAATGGCTTCT 734
Query 1366 GTGAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCC 1425
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 735 ATTAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTATCATGAGCCCACCC 794
Query 1426 AAGCCTGGTGATGACTCATATGACTCATACATGGCAGAAAGAGATGGAATTCTCTCATCC 1485
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 795 AAGCCTGGTGATGACTCATATGACTCATACATGGCCGAAAGAGATGGGATTCTCTCGTCA 854
Query 1486 ATGGCTAAACGTGCAAAG 1503
||||||| ||||||||||
Sbjct 855 ATGGCTAGACGTGCAAAG 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76789933920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5