BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72340.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476363 jgi|Araly1|476363|fgenesh2_kg.2__1493__AT1G72340.1 1814 0.0
Ahg914578 jgi|Araly1|914578|Al_scaffold_0001_4832 619 1e-176
> Ahg476363 jgi|Araly1|476363|fgenesh2_kg.2__1493__AT1G72340.1
Length=1180
Score = 1814 bits (982), Expect = 0.0
Identities = 1119/1185 (94%), Gaps = 10/1185 (1%)
Strand=Plus/Plus
Query 10 aaaaaaaaaaaTCAATGTGGAGAAGATCACCGTCGTTTATTCTCGACGAGCGACGAAGCT 69
|||||| ||||||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAAAAACAAAATCAATGTGGCGGAGATCACCGTCGTTTATCCTCGACGAGCGACGAAGCT 60
Query 70 CGAATTCACCTCCAATGGCGGATACAACACGAGGTCCTTTTCAAAACCCTGATTCCATCT 129
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 61 CGAATTCACCTCCCATGGCCGATACAACACGAGGTCCCTTTCAAAACCCTGATTCGATCT 120
Query 130 CCGCTTATTACCAAACTCGCGCGGCGCATCACGGTGTCATTACAAGCGACTGGCTAGCCC 189
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 CCGCTTATTACCAAACCCGCGCGGCGCATCACGGTGTCATTACTAGCGACTGGCTAGCCC 180
Query 190 AAGCTCAAGCCGCCGTTGGCGGCGTCTCAGGCGATGCCCAGC-ATGACT-T-ATCCG-TA 245
|||||||||||||||||||||| ||| ||||||| | ||| || || | ||||| ||
Sbjct 181 AAGCTCAAGCCGCCGTTGGCGGGGTCACAGGCGAAG---AGCAATCTCTCTCATCCGATA 237
Query 246 ACTGATCTCGGGAAC-GAGAAGTCGTTTAATGTAATTGAAGAGTTCAATAACTGGAGAAA 304
| | | || |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 A-TCAGCT-GGGAACGGAGAAGTCGTTTAATGTAATTGAAGAGTTCAACAACTGGAGAAA 295
Query 305 ACAACCGGATCTGGCTGAAGCCGTCGCGGCTATACGAGCTTTGGCTGCTGTTATTCGTGC 364
||||||||||||||||| |||||||||||||| |||||| | ||||| |||||||||||
Sbjct 296 GCAACCGGATCTGGCTGAGGCCGTCGCGGCTATTCGAGCTCTCGCTGCGGTTATTCGTGC 355
Query 365 GAGCGAAGCGAGCACCATGATGGAGCTTGAAATTGAGCTCAAAAAGGCTTCTGATACACT 424
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGCGAAGCTAGCACTATGATGGAGCTTGAAATTGAGCTCAAAAAGGCTTCTGATACACT 415
Query 425 CAAGTCGTGGGACAAAACGTCGATCTCTTTGACAGCTGGATGCGATTTGTTTATCAGATA 484
||| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 416 CAAATCATGGGACAAAACATCAATCTCTTTGACTGCTGGATGCGATTTGTTTATCAGATA 475
Query 485 CGTTACGAGAACGTCTGCTTTGGAATATGAAGATTTCAATTCAGCTAAGTCTCGTCTTCT 544
|||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 476 CGTTACGAGAACCTCTGCTTTAGAATACGAAGATTTCAATTCAGCAAAGTCTCGTCTTCT 535
Query 545 TGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGGCTCGTAGGATTATCGCAATGCT 604
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 TGAACGTGCTGAGAAATTTGGGGAAATTTCTTGCAAGGCTCGTAGGATTATCGCAATGCT 595
Query 605 TAGTCAAGATTTTATATTCGATGGTTGTACCATATTGGTTCATGGACTCTCTAGAGTTGT 664
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 596 TAGTCAAGATTTCATATTCGATGGTTGTACCATATTGGTTCATGGACTCTCAAGAGTTGT 655
Query 665 TCTGGAAATACTTAAGACTGCTGCACAAAACAACAAGCTCTTTCGAGTTCTCTGCACAGA 724
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TCTGGAAATACTAAAGACTGCTGCACAAAACAACAAGCTCTTTCGAGTTCTCTGCACAGA 715
Query 725 GGGGAGGCCGGATGGAACAGGAGTTCTGTTATCGAGTGAGCTATCGAAGCTCGATATCCC 784
||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 716 GGGAAGGCCGGATGGAACAGGAGTTTTGTTATCGAGTGAGCTATCGAAGCTTGATATCCC 775
Query 785 AGTGAAACTACTGCTTGATTCAGCTGTGGCGTATAGTATGGACGAGGTAGACATGGTGTT 844
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 AGTGAAACTACTGCTTGATTCAGCTGTGGCGTATAGCATGGACGAGGTAGACATGGTGTT 835
Query 845 TGTCGGGGCGGATGGAGTTGTAGAAAGTGGCGGTATTATCAACATGATGGGAACATACCA 904
| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 836 TTTCGGGGCAGATGGAGTTGTAGAAAGCGGCGGTATTATCAACATGATGGGAACATACCA 895
Query 905 AATCGCACTTGTGGCACACAGCATGAACAAACCGGTCTATGTTGCTGCTGAGAGTTACAA 964
||||||||| ||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 896 AATCGCACTCGTGGCCCACAGCATGAACAAACCGGTCTATGTCGCCGCCGAGAGTTACAA 955
Query 965 GTTCGCTAGGCTTTACCCATTAGACCAAAAGGACATGGCACCGGCGTTGAGACCAATCGA 1024
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 956 GTTCGCTAGGCTTTACCCATTAGACCAAAAGGACATGGCACCAGCGCTGAGACCAATCGA 1015
Query 1025 ATTTGGTGTAAAGATTCCGACAAAGGTGGAAGTAGAGAGGTCAGCTCGAGACTATACTCC 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATTTGGTGTAAAGATTCCGACAAAGGTGGAAGTAGAGAGGTCAGCTCGAGACTATACTCC 1075
Query 1085 GCCTCAGTACCTAACACTCCTCTTCACTGACCTTGGTGTTCTCTCTCCCTCTGTAGTTAG 1144
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1076 GCCTCAGTACCTAACGCTCCTCTTCACGGACCTTGGCGTTCTCTCTCCCTCTGTAGTTAG 1135
Query 1145 CGATGAGCTTATTCAACTCTATCTCTAATTTCAACTCCTAATTAA 1189
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CGATGAGCTTATTCAACTCTATCTCTAATTTCAACTCCTAATTAA 1180
> Ahg914578 jgi|Araly1|914578|Al_scaffold_0001_4832
Length=1734
Score = 619 bits (335), Expect = 1e-176
Identities = 709/891 (80%), Gaps = 20/891 (2%)
Strand=Plus/Plus
Query 279 ATTGAAGAGTTCAATAACTGGAGAAAACAACCGGATCTGGCTGAAGCCGTCGCGGCTATA 338
||||| ||||| |||| |||||| | ||||| ||| |||| || || || ||||| ||
Sbjct 841 ATTGAGGAGTTTAATAGTTGGAGACAGCAACCTGATTTGGCGGAGGCTGTTGCGGCGATT 900
Query 339 CGAGCT-TTGGCTGCTGTTATTCGTGCGAGCGAAGCGAGC-ACCATGATGGAGCTTGAAA 396
|| ||| || || ||||| ||| | || || ||||||| | || |||||||| |||||||
Sbjct 901 CGTGCTCTT-GCGGCTGTAATTAGGGCTAGTGAAGCGA-CTACTATGATGGAACTTGAAA 958
Query 397 TTGAGCTCAA-AAAGGCTTCTGATACACTCAAGTCGTGGGACAAAACGTCGATCTCTTTG 455
|||| || || ||| ||||||||||| | || || ||||||| ||| || || || ||
Sbjct 959 TTGAACTTAAGAAA-GCTTCTGATACTTTGAAATCATGGGACACAACCTCTATATCCTTA 1017
Query 456 ACAGCTGGATGCGATTTGTTTAT-CAGATACGTTACGAGAACGTCTGCTTTGGAATATGA 514
||||||||||| ||| | || || | | ||||| || |||| ||||||||||||| |||
Sbjct 1018 ACAGCTGGATGTGATCTATTCATGC-GCTACGTGACTCGAACATCTGCTTTGGAATTTGA 1076
Query 515 AGATTTCAATTCAGCTAAGTCTCGTCTTCTTGAACGTGCTGAGAAATTTGGGGAAATATC 574
|| ||||| || || || || ||| | ||||||||||||||||||||||||||||||||
Sbjct 1077 GGACTTCAACTCTGCAAAATCCCGTGTGCTTGAACGTGCTGAGAAATTTGGGGAAATATC 1136
Query 575 TTGCAAGGCTCGTAGGATTATCGCAATGCTTAGTCAAGATTTTATATTCGATGGTTGTAC 634
||||||||| || | ||| || |||||||||||||||||||| ||||| ||||| |||||
Sbjct 1137 TTGCAAGGCCCGAACGATAATTGCAATGCTTAGTCAAGATTTCATATTTGATGGGTGTAC 1196
Query 635 CATAT-TGGTTCATGGACTCTCTAGAGTTGT-TCTGGAAATACTTAAGAC-TGCTGCACA 691
|| | |||| ||||| |||| |||||||| | || ||||||| ||||| | | || ||
Sbjct 1197 TAT-TCTGGTCCATGGTTTCTCCAGAGTTGTGTTTG-AAATACTAAAGACAT-CAGCGCA 1253
Query 692 AAACAACAAGCTCTTTCGAGTTCTCTGCACAGAGGGGAGGCCGGATGGAACAGGAGTTCT 751
|||||| || |||||||||||| | ||||||||||| ||||| ||| |||||| || ||
Sbjct 1254 AAACAAGAAACTCTTTCGAGTTTTGTGCACAGAGGGAAGGCCAGATAAAACAGGTGTACT 1313
Query 752 GTTATCGAGTGAGCTATCGAAGCTCGATATCCCAGTGAAACTACTGCTTGATTCAGCTGT 811
| || | || ||||| | || || ||||| || ||||| || ||| | |||||||| ||
Sbjct 1314 GCTAGCCAGCGAGCTCGCAAAACTGGATATTCCTGTGAAGCTTCTGATCGATTCAGCCGT 1373
Query 812 GGCGTATAGTATGGACGAGGTAGACATGGTGTTTGTCGGGGCGGATGGAGTTGTAGAAAG 871
|| ||||| ||||| || ||||||||||| ||||| || || || ||||| || |||||
Sbjct 1374 AGCCTATAGCATGGATGAAGTAGACATGGTATTTGTTGGAGCTGACGGAGTGGTTGAAAG 1433
Query 872 TGGCGGTATTATCAACATGATGGGAACATACCAAATCGCACTTGTGGCACACAGCATGAA 931
|||||| || || |||||||||||||| ||||||||||| || || ||||| || |||||
Sbjct 1434 TGGCGGGATAATTAACATGATGGGAACTTACCAAATCGCCCTCGTCGCACATAGTATGAA 1493
Query 932 CAAACCGGTCTATGTTGCTGCTGAGAGTTACAAGTTCGCTA-GGCTTTACCCATTAGACC 990
||||| |||||||| ||||| |||||||||||||| || | |||| |||||||| || |
Sbjct 1494 TAAACCAGTCTATGTAGCTGCAGAGAGTTACAAGTTTGC-ACGGCTCTACCCATTGGATC 1552
Query 991 AAAAGGACATGGCACCGGCGTTGAGACCAATCGAATTTGG-TGTAAA-GATTCCGACAAA 1048
|||||||| | | |||||| ||| |||| || || ||| ||| | |||| | ||
Sbjct 1553 AAAAGGACTTAGAACCGGCCTTGCGACCTATTGA-TTTCAATGTTCCTG-TTCCTCCTAA 1610
Query 1049 GGTGGAAGTAGAGAGGTCAGCTCGAGACTATACTCCGCCTCAGTACCTAACACTCCTCTT 1108
||| || ||||| || || || | ||||| ||||| ||||||||| | || || |||||
Sbjct 1611 GGTTGAGGTAGAAAGATCTGCAAGGGACTACACTCCTCCTCAGTACTTGACTCTGCTCTT 1670
Query 1109 CACTGACCTTGGTGTTCTCTCTCCCTCTGTAGTTAGCGATGAGCTTATTCA 1159
|||||| ||||||| |||| |||| |||||||| || ||||||||||||||
Sbjct 1671 CACTGATCTTGGTGCTCTCACTCCATCTGTAGTAAGTGATGAGCTTATTCA 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5