BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G72350.1

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926600 jgi|Araly1|926600|scaffold_202161.1                        965    0.0  


> Ahg926600 jgi|Araly1|926600|scaffold_202161.1
Length=722

 Score =  965 bits (522),  Expect = 0.0
 Identities = 618/665 (93%), Gaps = 4/665 (1%)
 Strand=Plus/Plus

Query  13   GAAGCTTCAACAATCACTTTCTTACCAACCACGGaaccaaaa-cccctacaaaaccctaa  71
            ||||||||||||||||||| |||||| ||||| ||| ||||| ||||| |||||||||||
Sbjct  40   GAAGCTTCAACAATCACTTGCTTACCGACCAC-GAAACAAAACCCCCTTCAAAACCCTAA  98

Query  72   cttgctggccaaaccaaaaaaagagactaaacaaaaaaaacctaaaaccaccaaaGGTCG  131
            |||||||| ||| ||||||||||||||||||| |||||  ||||||||||||||||||||
Sbjct  99   CTTGCTGGTCAACCCAAAAAAAGAGACTAAACTAAAAACCCCTAAAACCACCAAAGGTCG  158

Query  132  ACAGAAGATAGAGATCAAGGAGATCATGCTGGAGACCCGAAGGCAAGTGACGTTTTCCAA  191
            ||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||
Sbjct  159  ACAGAAGATAGAGATCAAGAAGATCATTCTGGAAAACCGAAGGCAAGTGACGTTTTCCAA  218

Query  192  ACGACGATCCGGGCTTTTCAAAAAAGCGGCAGAATTAAGCGTTCTCTGCGGCGCACAGAT  251
            ||| |||| ||||||||||||||||||||| ||  |||||||||||||||||||||| ||
Sbjct  219  ACGCCGATTCGGGCTTTTCAAAAAAGCGGCGGAGCTAAGCGTTCTCTGCGGCGCACAAAT  278

Query  252  TGGTATCATAACGTTTTCACGTTG-CGATAGGATCTACTCGTTTGGTAACGTGAACTCAC  310
            |||||||||||||||||||||  |  ||||||||||||||||||||||||||| ||||||
Sbjct  279  TGGTATCATAACGTTTTCACG-AGTAGATAGGATCTACTCGTTTGGTAACGTGGACTCAC  337

Query  311  TCATCGATAAATACTTGCGTAAGGCTCCGGTGATGCTGAGGTCACATCCCGGTGGTAACG  370
            ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||
Sbjct  338  TCATCGATAAATACTTGCGTAAGACTCCGGTGATGCTGAGGTCACATCCTGGAGGTAACG  397

Query  371  TGGCAAACGGAGAGGAAGATAACGACGGTTTGATGTGGTGGGAGAGAGCGGTGGAGAGTG  430
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  398  TGGCAAACGGAGAGGAAGATAACGACGGTTTGATGTGGTGGGAGAGGGCGGTGGAGAGTG  457

Query  431  TGCCGGAGGAGCATATGGAAGAGTACAAGAATGCCTTGAGTGTGTTAAGGGAGAATTTGT  490
            | ||||||||| |||| |||||||||||||| || ||||||||||||||||||||||| |
Sbjct  458  TTCCGGAGGAGGATATTGAAGAGTACAAGAAGGCGTTGAGTGTGTTAAGGGAGAATTTAT  517

Query  491  TGACGAGGATCTACCAGATGAGTGGTGATCGGACGGTTGAGAATCTTCCGGCATTTCCAA  550
            |||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  518  TGACGAGGATTTATCAGATGAGTGGTGATCGGACGGTCGAGAATCTGCCGGCATTTCCAA  577

Query  551  ATGAGATGGCTATGGCTGACTGGAAATTAACGAATGAAAATCTGATGGCTAGGAACGATC  610
            |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  578  ATGAGATGGCTATGGCTGACTGGAAATTGACTAATGAAAATCTGATGGCTAGGAACGATC  637

Query  611  GAGGTTATGGAGGTAACAATGGTGATTTGGAGTTTGCGTTTATGCCTCAAAACGGTAGAC  670
            ||||||| | |||||||  ||||||||||||||||||||||||| |||||||||||||||
Sbjct  638  GAGGTTACGCAGGTAACGGTGGTGATTTGGAGTTTGCGTTTATGTCTCAAAACGGTAGAC  697

Query  671  AGTGA  675
            |||||
Sbjct  698  AGTGA  702



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5