BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G72360.2

Length=931
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926601 jgi|Araly1|926601|scaffold_202162.1                        486    1e-136


> Ahg926601 jgi|Araly1|926601|scaffold_202162.1
Length=772

 Score =  486 bits (263),  Expect = 1e-136
 Identities = 338/373 (91%), Gaps = 10/373 (3%)
 Strand=Plus/Plus

Query  414  GCTGAAGAAGCTGCAAGAGCTTATGATCTTGAAGCTAAGAGAATCCGTGGAGCCAAAGCT  473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  234  GCTGAAGAAGCTGCAAGAGCTTATGATCTTGAAGCTAAGAGAATCCGTGGAGCTAAAGCT  293

Query  474  AAGCTCAATTTCCCTAACGAATCCTCTGGAAAGAGGAAAGCCAAG--GC-TAAGACTGTG  530
            ||||||||||||||||||||||||||| ||||| | |||||| ||  || ||||||||||
Sbjct  294  AAGCTCAATTTCCCTAACGAATCCTCTAGAAAGCGAAAAGCCGAGACGCCTAAGACTGTG  353

Query  531  CAACAGGTAGAGGAGAATCATGAGGCTGATCTTG-ATGTGGCGGTGG-TAAGCTCAGCGC  588
            |||||| | |||||||| |||||||||||||||| || ||||||||| || |||||  ||
Sbjct  354  CAACAGATTGAGGAGAAGCATGAGGCTGATCTTGGAT-TGGCGGTGGCTA-GCTCAATGC  411

Query  589  CTAGTAGTAGCTGTCTTGATTTCTTGTGGGAGGAGAATAATCCGGACACGCTTCTGATTG  648
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  412  CTAGTAGTAGCTGTCTTGATTTCTTGTGGGAAGAGAATAATCCGGACACGCTTCTGATCG  471

Query  649  ATACACAATGGCTCGAAGATATCATCATGGGCGATGCGAATAAGAAACATGAACCTAATG  708
            |||||||||||||||||||| |||||||||||||||| || ||||||||||||| |||||
Sbjct  472  ATACACAATGGCTCGAAGATGTCATCATGGGCGATGCCAAGAAGAAACATGAACGTAATG  531

Query  709  ATAGTGAAGAAGCCAACAACGTTGATGCTTCTCTGCTTTCTGAAGAGCTTCTTGCTTTTG  768
            |||||||||||||||||   ||| ||||| ||| |||||| |||||||| || | |||||
Sbjct  532  ATAGTGAAGAAGCCAAC---GTTAATGCTGCTCCGCTTTCGGAAGAGCTACTAGGTTTTG  588

Query  769  AGAACCAGACCGA  781
            | ||| |||||||
Sbjct  589  AAAACAAGACCGA  601



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34539362802


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5