BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72370.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926602 jgi|Araly1|926602|scaffold_202163.1 1520 0.0
> Ahg926602 jgi|Araly1|926602|scaffold_202163.1
Length=939
Score = 1520 bits (823), Expect = 0.0
Identities = 905/944 (96%), Gaps = 7/944 (1%)
Strand=Plus/Plus
Query 67 AGAAGAAGAAGAGAGATAAGAAAATGGCGACTAATGGATCTGCTAGCTCAGCGCAGCTCT 126
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGAAGAAGAGAGATAACAAAATGGCGACTAATGGATCTGCTAGCTCAGCGCAGCTCC 60
Query 127 CTCAGAAGGAAGCTGATGTCAGGATGATGTGTGCCGCTGAGGTTCATCTTGGAACCAAGA 186
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CTCAGAAGGAAGCTGACATCAGGATGATGTGTGCTGCTGAGGTTCATCTTGGAACCAAGA 120
Query 187 ATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGGTATTTACATCT 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGGTATTTACATCT 180
Query 247 TCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGCTAGAGTTATTGTTGCCATTG 306
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAACCTTGGCAAAACATGGGATAAGCTCCAGATGGCTGCTAGAGTTATTGTTGCCATTG 240
Query 307 AGAACCCACAGGACATCATCGTCCAGTCAGCTAGGCCCTATGGACAGAGAGCTGTGTTGA 366
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 241 AGAACCCACAGGACATCATTGTTCAGTCTGCTAGGCCCTATGGACAGAGAGCTGTGTTGA 300
Query 367 AGTTTGCTCAGTACACTGGAGCCAATGCCATTGCTGGAAGACACACTCCTGGTACCTTCA 426
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 AGTTTGCTCAGTACACTGGAGCCAATGCCATTGCTGGAAGGCACACTCCTGGTACCTTCA 360
Query 427 CCAATCAGATGCAGACATCCTTCAGTGAACCAAGGCTGTTGATTCTTACTGACCCAAGAA 486
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 361 CCAATCAGATGCAGACATCCTTCAGTGAACCTAGGCTGCTGATTCTTACTGACCCAAGAA 420
Query 487 CTGACCACCAGCCTATCAAGGAAGGTGCTTTGGGAAACATTCCAATCATTGCTTTCTGTG 546
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTGACCACCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAATCATTGCTTTCTGTG 480
Query 547 ACACAGACTCTCCAATGAGATTTGTTGACATTGGTATCCCAGCCAACAACAAGGGAAAGC 606
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 ACACTGACTCTCCAATGAGATTTGTTGACATTGGTATCCCTGCCAACAACAAGGGAAAGC 540
Query 607 ACAGCATTGGGTGCCTTTTCTGGCTTCTGGCTCGCATGGTCCTTCAGATGCGTGGAACCA 666
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 ACAGCATTGGGTGTCTTTTCTGGCTTCTTGCTCGCATGGTCCTTCAGATGCGTGGAACCA 600
Query 667 TTGCTGCTGGACAGAAGTGGGATGTCATGGTTGACCTGTTCTTTTACAGGGAACCTGAGG 726
||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 601 TTGGTGCTGCACAGAAGTGGGATGTCATGGTTGATCTGTTCTTTTACAGGGAGCCTGAGG 660
Query 727 AGACTAAGCCAGAGGATGAAGATGAAGCTGGCCCTCAGGCAGAATATGGTGCACTTCCTG 786
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 661 AGACTAAGCCAGAGGATGAAGATGAAGCTGCCCCTCAGGCAGAATATGG---ACTTCCTG 717
Query 787 CTCCAGAATATGGAATGGTAGGTGGAGACCAATGGACCACCGCTCAGATCCCTGATGCTG 846
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTCCGGAATATGGAATGGTTGGTGGAGACCAATGGACCACCGCTCAGATCCCTGATGCTG 777
Query 847 CATGGCCAGGAGAAGG-TCAGGCACCAATCTCTGCTGCACCTGCTGCTGCTTCTTGGAGT 905
||||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||
Sbjct 778 CATGGCCAGGAGA-GGCTCAGGCTCCAATCTCTGCTGCACCTGCTGCTACTTCTTGGAGT 836
Query 906 GATTCCGCTGCTGCACCGGCAGATGGTGGATGGGA-AGCTGCCGCGCCACCCTCAGGGGC 964
|| |||||||||||||| ||||||||||||||||| | |||||| ||||||| |||| ||
Sbjct 837 GACTCCGCTGCTGCACCAGCAGATGGTGGATGGGACA-CTGCCGTGCCACCCCCAGGTGC 895
Query 965 ACCAGCTGCTGGTTGGGAGTAAAGTTGATAGCCTTTACTCAATG 1008
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TCCAGCTGCTGGTTGGGAGTAAAGTTGATAGCCTTTACTCAATG 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5