BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72416.3
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476373 jgi|Araly1|476373|fgenesh2_kg.2__1503__AT1G72416.1 839 0.0
> Ahg476373 jgi|Araly1|476373|fgenesh2_kg.2__1503__AT1G72416.1
Length=718
Score = 839 bits (454), Expect = 0.0
Identities = 624/699 (89%), Gaps = 39/699 (6%)
Strand=Plus/Plus
Query 1 GCACGATACCCAAAATATCAAActcttcttcttttcccttctcttctcttcttctcttct 60
||||||||||||||||||||||||||||||| ||| | | | || |||||||||||
Sbjct 1 GCACGATACCCAAAATATCAAACTCTTCTTC-TTT---AAC-C-T-TC-TCTTCTCTTCT 52
Query 61 tcCACGTTTACGCGTATACACATC-TCTATACATACATTAATCTTGATCCTTCTTTATCT 119
||||||||||||||||| |||| | ||||||||| ||||||||| |||| ||||||||||
Sbjct 53 TCCACGTTTACGCGTATCCACA-CATCTATACATTCATTAATCTCGATCTTTCTTTATCT 111
Query 120 CTTTGCTTCCAATAAACTCCAAAGAACAGCTCTTTCTTTTTCTCATTCTTA-CTATCATC 178
||||||||| |||||||||||| ||| |||||| |||||||||||||||| |||||||
Sbjct 112 CTTTGCTTCTAATAAACTCCAACGAAGTGCTCTTGCTTTTTCTCATTCTTATATATCATC 171
Query 179 ATTAATGGAG-AGAGAAGACTTGTACGCTGTCT-TGGATTTGAACAACGAATGTACACAA 236
|| ||||||| || ||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 172 ATCAATGGAGAAG-GAAGACTTGTACGCTGT-TATGGATTTGAACAATGAATGTACACAA 229
Query 237 GGAGATCTCAGACTTTCTTACAAGAACCTTGTTCTGAAATGGCATCCAGATCGGTTTCTT 296
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 230 AGAGATCTCAAACTTTCTTACAAGAACCTTGCTCTGAAATGGCATCCAGATCGGTTTCTT 289
Query 297 GAAGAAATAGAGAAAGATGAAGCTAAGATGAAATTTCAGTCCATTCAACGAGCCTATTCT 356
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 290 GAAGATATTGAGAAAGATGAAGCCAAGATGAAATTTCAGTCCATTCAACGAGCCTATTCT 349
Query 357 GTTTTGTCGGATTCCAACAAGAGGCTTTTGTATGACGTCGGTGCTTATGATAGTGATGAC 416
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 350 GTTTTGTCGGATTCCAACAAGAGGCTGTTGTATGACGTCGGTGCTTATGACAGTGATGAC 409
Query 417 GACGAAACTGGAATGGCTGATTTCATAAATGAGATGGTGACGCTTATGGCTCAAACTCAA 476
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 410 GACGAAACTGGAATGGCTGATTTCATAAATGAGATGGTGACGCTGATGGCTCAAACTCAA 469
Query 477 TCTACGGGGGACGAAAGTTTAGAGGAATTTGAAGAGTTATTTCAAGAATTGTTGAAGGAT 536
|||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 470 TCTACGGGTGACGAAAGTTTAGAGGAATTTGAAGAGTTGTTTGAAGAATTATTGAAGGAT 529
Query 537 GATGTGAATCAATTCAAAACTCGTTCATCTTCGTCTTCATGTTCGCAATTTAGTGGCACG 596
|||||||||||||||||||||||||| | |||| | | ||| ||| | | ||||
Sbjct 530 GATGTGAATCAATTCAAAACTCGTTCGTATTCG-C--CG-GTT---AAT---G-G-CACG 577
Query 597 TCGACTTTGGTCCATTGCGATGATTTATCAAATTCAAATGATATTCCCAACAAAATTAAC 656
||| | | | || ||||||||||||||||| |||||||| || |||||||||
Sbjct 578 TCGG-T--G--C-ATCGCGATGATTTATCAAAT------GATATTCCGAATAAAATTAAC 625
Query 657 GGTCATGACAACTATTGTTGTATAAGTTCTAGTAAGGTA 695
| ||||||||||| |||||||||||||||||||||||||
Sbjct 626 GCTCATGACAACTGTTGTTGTATAAGTTCTAGTAAGGTA 664
Score = 106 bits (57), Expect = 4e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 862 AAGGTAGGTGGTCCATCGACGAGATTCCAAGCTGGCAATAGAAGATCTAAGAAGTAGAGC 921
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 AAGGTAGGTGGTCCATCGACGAGATTCCAAGTTGGCAATAGAAGATCTAAGAAGTAGAGC 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39342850344
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5