BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72420.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926606 jgi|Araly1|926606|scaffold_202167.1 1171 0.0
Ahg471939 jgi|Araly1|471939|fgenesh2_kg.1__1893__AT1G17350.1 632 1e-180
> Ahg926606 jgi|Araly1|926606|scaffold_202167.1
Length=728
Score = 1171 bits (634), Expect = 0.0
Identities = 695/725 (96%), Gaps = 2/725 (0%)
Strand=Plus/Plus
Query 25 CAGCAACTTCAGAACTATGTCACGGTTTAGATCATTGTGGCAAGCCTCGGTGAATGCAAC 84
||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 6 CAGCAACTT-ACAACTATGTCACGCTTTAGATCATTGTGGCAAGCCTCGGTGAATGCAAC 64
Query 85 AAAGAAGGCTCTAACGTGGGAACTCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATT 144
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 AAAGAAGGCTCTTACGTGGGAACTCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATT 124
Query 145 CAAGTTCAATTCAAAAGAAGACCTTAAGACATGGCACCTATACTCTGATTCTGAATATGG 204
||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||
Sbjct 125 CAAGTTCAATTCAAAAGAAGATCTCAAAACATGGCACCTGTACTCTGATTCTGAATATGG 184
Query 205 AGGATTATCTTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATTGCAATGG 264
|||||||||||||||||| |||||||||||||||||||||||| |||||||||| | |||
Sbjct 185 AGGATTATCTTCGGCTTCATTGGAAATTAAAGATGGAGGAAATGGATCAGATTGTATTGG 244
Query 265 TGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCG 324
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 245 TGTTTTCTCTGGGAACCTCTCTACGGATATGAGCGAAGGTTCAAAATGGAATATCAATCG 304
Query 325 GAGTGGTTTCTGTGGAATGCGGTCAAAGAAGTTTGATGGCTTTATTGATCTCGAAGGGTA 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TAGTGGTTTCTGTGGAATGCGGTCAAAGAAGTTTGATGGCTTTATTGATCTCGAAGGGTA 364
Query 385 TGATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTATATATAC 444
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 365 TGATTCCATAGCCCTGAGGCTCAGAGGAGATGGAAGGTGCTATATCTCTACTATATATAC 424
Query 445 TGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGACAACTCATGGCAGGCTTTTGTTTT 504
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 425 CGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGATAACTCATGGCAAGCTTTTGTTTT 484
Query 505 TGCTCCAAAGGGAAACTGGTATACAGCTAAGGTTCCTCTTACTCGCTACTTACCAACATG 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TGCTCCAAAGGGAAACTGGTATACAGCTAAGGTTCCTCTTACTCGCTACTTACCAACATG 544
Query 565 GAAAGGAAACGTGATAGATGCAGAAATGGAGATGAATCCAGGTCATGTTGTTGGTATGTC 624
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 545 GAAAGGAAATGTGATAGATGCAGAAATGGAGATGAATCCAGGTCGTGTTGTTGGTATGTC 604
Query 625 TCTATCCGTTAACGCACAAGGAGGTGGTTTCATTGGAGCTAAATCAGGCGCAGGCGATTT 684
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 605 TCTATCTGTTAATGCACAAGGAGGTGGTTTCATTGGAGCTAAATCAGGCGCAGGTGATTT 664
Query 685 CCAAGTCGAAATTGACTGGATCAAAGCAGTGAGGATGCCATGAACGATGATGAAAAAAGC 744
|| ||||||||| |||||| ||||||||||||| |||||||||| |||||||||||| ||
Sbjct 665 CCTAGTCGAAATCGACTGGGTCAAAGCAGTGAGAATGCCATGAATGATGATGAAAAA-GC 723
Query 745 TTTCT 749
|||||
Sbjct 724 TTTCT 728
> Ahg471939 jgi|Araly1|471939|fgenesh2_kg.1__1893__AT1G17350.1
Length=948
Score = 632 bits (342), Expect = 1e-180
Identities = 569/678 (84%), Gaps = 17/678 (3%)
Strand=Plus/Plus
Query 41 ATGTCACGGTTTAGATCATTGTGGCAAGCCTCGGTGAATGCAACAAAGAAGGCTCTAACG 100
|||||| ||||| |||| |||| ||||||||| || ||||| |||||||||||||| ||
Sbjct 79 ATGTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCCACAAAGAAGGCTCTTACA 138
Query 101 TGGGAAC-TCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATTCAAGTTCAATTCAAA 159
| ||||| | ||||||||||| || |||| ||||||| |||||| |||||| | || ||
Sbjct 139 T-GGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATATTTAAGTTCCACTCGAA 197
Query 160 AGAAGACCTT-AAGACATGGCACCTATACTCTGATTCTGAATATGGAGGATTATCTTCGG 218
||| || ||| |||| |||||| || || || ||||||||||||||||||||||||||||
Sbjct 198 AGAGGA-CTTAAAGAAATGGCATCTCTATTCCGATTCTGAATATGGAGGATTATCTTCGG 256
Query 219 CTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATTGCAATGGTGTTTTCTCTGGGA 278
|||| |||||||| |||| |||| || |||||||||||| ||| ||||||| ||||
Sbjct 257 CTTCCTTGGAAATCCCAGATAAAGGAGATGGATCAGATTGCACTGGAATTTTCTCGGGGA 316
Query 279 ACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCGGAGTGGTTTCTGTG 338
||| ||| || | || ||||| ||||||||||| |||| ||| |||||||||||||
Sbjct 317 GCCTATCTGTAGACCTTAGTGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTG 376
Query 339 GAATGCGGTCAAAGAAGTTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCC 398
||||||| |||||||||||||||||||| ||||||||||| ||||||||| | |||||||
Sbjct 377 GAATGCGCTCAAAGAAGTTTGATGGCTTCATTGATCTCGATGGGTATGATGCAATAGCCC 436
Query 399 TGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTATATATACTGAGAACTGGGTGA 458
||||||||| |||||||||||| || ||||| ||||| || ||||| || ||||||||||
Sbjct 437 TGAGGCTCAGAGGAGATGGAAGATGTTATATCTCTACCATCTATACCGAAAACTGGGTGA 496
Query 459 ACTCGCCAGGACAAG-CAGAAGACAACTCATGGCAGGCTTTTGTTTTTGCTCCAAAGGGA 517
| || || ||||| | ||||||| ||||| ||||| |||||||||||||||||||||| |
Sbjct 497 ATTCACCGGGACA-GTCAGAAGATAACTCGTGGCAAGCTTTTGTTTTTGCTCCAAAGG-A 554
Query 518 AACT-GGTATACAGCTAAGGTTCCTCTTA-CTCGCTACTTACCAACATGGAAAGGAAACG 575
| | |||||||||||||| ||||||| | |||| ||||| |||||||||| |||||| |
Sbjct 555 CAGTTGGTATACAGCTAAGATTCCTCT-AGCTCGATACTTGCCAACATGGAGAGGAAATG 613
Query 576 TGATAGATGCAGAAATGGAGATGAATCCAGGTCATGTTGTTGGTATGTC-TCTATCCGTT 634
| ||||||| |||||||||||||||||||||| |||| | |||||||| | | || ||
Sbjct 614 TTATAGATGTGGAAATGGAGATGAATCCAGGTCGTGTTCTGGGTATGTCAT-TGTCAGTA 672
Query 635 AACGCACAAGGAGGTG-GTTTCATTGGAGCTAAATCAGGCGCAGGCGATTTCCAAGTCGA 693
|||||| |||| |||| | || |||||||||||||| ||||| ||||||| ||| ||
Sbjct 673 AACGCAGAAGGTGGTGCGGTT----GGAGCTAAATCAGGAGCAGGTGATTTCCGAGTAGA 728
Query 694 AATTGACTGGATCAAAGC 711
||||||||||||||||||
Sbjct 729 AATTGACTGGATCAAAGC 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5