BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G72430.1

Length=720
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926607 jgi|Araly1|926607|scaffold_202168.1                        608    2e-173


> Ahg926607 jgi|Araly1|926607|scaffold_202168.1
Length=400

 Score =  608 bits (329),  Expect = 2e-173
 Identities = 367/386 (95%), Gaps = 0/386 (0%)
 Strand=Plus/Plus

Query  116  TTAGCAATGGCCAAAGTTGGGAAGCTGACAAAGCTTAAGTCGGCTATGAAGAAATGGCCT  175
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  15   TTAGCAATGGCCAAAGTTGGGAAGCTGACAAAGCTCAAGTCGGCTATGAAGAAATGGCCT  74

Query  176  TCTTTCGCCAAGAACCACCACCACTCAACCTCCTCAGCCGCTGTTTCCGACGAACTCTCA  235
            ||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct  75   TCTTTCGCCAAGAACCACCACCATTCAACCTCCTCAGCGGCTGTTTCGGACGAGCTCTCA  134

Query  236  GAAGACAACAATCTCCATGTGGTTTACGTTGGTCAAACTCGAAGACCTTACATGCTTAGA  295
            || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  135  GAGGACAACAATCTCCATGTGGTTTACGTTGGCCAAACTCGAAGACCCTACATGCTTAGA  194

Query  296  CCAGACATCATCTCTCACCCACTCTTTCAAGAACTCGTGGATCGGTCTTCTTCTAGATCC  355
            || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  195  CCCGACATTATCTCTCATCCACTCTTTCAAGAACTCGTGGATCGGTCTTCTTCTAGATCC  254

Query  356  ATCGAACAAGATCGTGAGATTGTTGTAGCTTGTGAAGTCGTTTTGTTCGAGCACTTGCTG  415
             |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct  255  GTCGAGCAAGATCGTGAAATTGTTGTAGCTTGTGAAGTCGTTTTGTTCGAGCACTTGTTG  314

Query  416  TGGATGCTCAAGTCTGGTCAAGAAGGAGGATCCGTTGAAGAATTGGCTGAGTTCTATACT  475
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  315  TGGATGCTCAAGTCTGGTCAAGAAGGAGGCTCCGTCGAAGAATTGGCTGAGTTCTATACT  374

Query  476  TATTGACATCGACCGATTGATTTTAT  501
            ||||||||||| |||||| |||||||
Sbjct  375  TATTGACATCGGCCGATTCATTTTAT  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26495427315


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5