BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72450.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476379 jgi|Araly1|476379|fgenesh2_kg.2__1509__AT1G72450.1 1109 0.0
> Ahg476379 jgi|Araly1|476379|fgenesh2_kg.2__1509__AT1G72450.1
Length=1157
Score = 1109 bits (600), Expect = 0.0
Identities = 907/1044 (87%), Gaps = 65/1044 (6%)
Strand=Plus/Plus
Query 184 GTCAACGGGACAAGCGCCGGAGAAGTCCAATTTTTCTCAGAGATGTAGTCTGCTCAGCCG 243
||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 154 GTCGACGGGACAAGGGCCGGAGAAGTCAAATTTTTCTCAGAGATGTAGTTTGCTCAGCCG 213
Query 244 GTACTTGAAGGAGAAGGGAAGTTTTGGGAATATTAATATGGGGTTGGCTCGAAAATCCGA 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 214 GTACTTGAAGGAGAAGGGAAGTTTTGGGAATATTACTATGGGGTTGGCTCGAATATCCGA 273
Query 304 TCTTGAACTCGCCGGAAAATTCGATCTCAAAGGACAACAAAATGTGATTAAGAAGGTAGA 363
|||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 274 TCTTGAGCTCGCCGGAAAATTCGATCTCAAAGGTCAACAAAATGTGATTGAGAAGGCAGA 333
Query 364 GACCTCAGAAAC-TAG-ACCG-TTC--AAGTTGATTCAGAAGTTTTCTATTGGTGAGGCC 418
| | ||| | | | | | ||| ||| | ||| | || |||| || ||||||||
Sbjct 334 -AAC-AAGACCCTTTGAAGTGATTCAAAAGCT--TTCCG-AGCTTTCCGTTTGTGAGGCC 388
Query 419 TCTACTTCTAC-CGAAGACAAAGCCATATATATTGATCTCAGTGAACCGGCAAAAGTAGC 477
||||||| | | ||| |||||||||||||| |||||||||||||||||| |||||| |
Sbjct 389 TCTACTTTTTCTGGAA-ACAAAGCCATATATGTTGATCTCAGTGAACCGGAAAAAGTTGT 447
Query 478 ACCGGAGTCTGGAAATTCACAGTTGACCATATTCTTTGGAGGAAAAGTTATGGTTTTCAA 537
| | || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 448 AGCAAAGCCTGGAAATTCACAGTTGACCATATTCTTTGGAGGAAAAGTGATGGTTTTCAA 507
Query 538 CGAGTTTCCTGAAGACAAAGCTAAGGAGATAATGGAAGTAGCTAAAGAAGCGAATCATGT 597
||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 508 TGAGTTTCCTGAGGACAAAGCAAAGGAAATAATGGAAGTAGCAAAAGAAGCGAATCATGT 567
Query 598 TGCTGTTGATTC---TAAGAACAGTCAGAGTCACATGAATCT-----TG----ACAAAAG 645
|||||||||||| ||| |||| |||||||||||||||||| || |||||||
Sbjct 568 TGCTGTTGATTCGAATAACAACACTCAGAGTCACATGAATCTCGACATGAACAACAAAAG 627
Query 646 CAACGTGGTGATTCCCGATCTTAACGAGCCAACGAGTTCCGGGAACAATGAAGATCAAGA 705
||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct 628 CAACGTGGTGATTCCTGATCTGAACGAGCCAACAAGTTCGGGGAACAACGAAGATCAAGA 687
Query 706 AACTGGGCAGCAACATCAGGTTGTGGAACGCATTGCAAGAAGAGCTTCTCTTCATCGATT 765
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 688 AACAGGGCAGCAACATCAGGTTGTGGAACGCATTGCAAGAAGATCTTCTCTTCATCGATT 747
Query 766 CTTTGCTAAACGAAAAGACAGGGCTGTGGCTAGAGCTCCATATCAAGTGAACCAACACGG 825
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 748 CTTTGCAAAAAGAAAAGACAGGGCTGTGGCTAGAGCTCCATATCAAGTGAACCAAAACGG 807
Query 826 TAGTCATCTTCCTCCCAAGCCAGAGATGGTTGCTCCATCGATAAAGTCAGGCCAATCGTC 885
| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 808 TGGTCATCTTCCTCCCAAGCCAGAGATGGGTACTCCATCGATAAAGTCAGGCCAATCCTC 867
Query 886 GCAACACATTGCAACTCCTCCAAAACCAAAGGCCCATAACCATATGCCGATGGAGGTGGA 945
||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 868 GCAACACTTTGCAACTCCTCCAAAACCAAAGGCACATAACCATATGCCAATGGAAGTGGA 927
Query 946 CAAGAAAGAAGGACAATCTTCCAAAAACCTTGAACTCAAGCTTTAGGGCGTATAAAATGC 1005
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| | |
Sbjct 928 CAAGAAAGAAGGACAGTCTTCCAAAAATCTTGAACTCAAGCTTTAGGGC--ATA---T-C 981
Query 1006 ACGATCGAGTTCACGTTTCTAGTTTTCACTTATTTAGGATTTGAACCCAAATACCCTTTT 1065
|||| | ||||| |||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 982 ACGA--G--TTCACATTTCTAGTTT-CACTTATTTAGGATTTGAAGCCAAATACCCTTTT 1036
Query 1066 ATATTTTCTTCCATTACTTTTGACCAATTTAAGTTATTTATAGTACTGTATTACGTAGCT 1125
| ||| || ||||||||||||| ||| ||||| |||||||||||||
Sbjct 1037 A------CTT---TT------GACCAATTTAAGTGATTCATAGT---GTATTACGTAGCT 1078
Query 1126 AGTATTTATATTTCAAAACATACATATTTTGATACTTGTTTTTTAGAT-TC-TTTA-AT- 1181
|||||| || || | | ||| ||||||||||||||||||||||| || | |||| ||
Sbjct 1079 AGTATT-AT-TT-CTACACA--CATATTTTGATACTTGTTTTTTACATCTTGTTTAGATC 1133
Query 1182 -T--AAAATTGTCATCTGGATTAC 1202
| ||||||||||| | ||||||
Sbjct 1134 CTTTAAAATTGTCATTTAGATTAC 1157
Score = 176 bits (95), Expect = 3e-43
Identities = 127/141 (90%), Gaps = 8/141 (6%)
Strand=Plus/Plus
Query 1 ATTTATTCGGGAGAGG-T---TAAAAGCCACAGAAACTTATTGGCTAGAATTGGTTATTT 56
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATTTATTCGGGAGAGGTTAAATAAAAGCCTCAGAAACTTATTGGCTAGAATTGGTTATTT 60
Query 57 ATAACAACAACACATGAGCAAAAA-GCTCAAAACATCTACATACTCTTTGGAATCCTCGA 115
|||||||||||| ||||||||||| |||||||||||||| |||| ||||| ||| |||||
Sbjct 61 ATAACAACAACATATGAGCAAAAAAGCTCAAAACATCTATATACCCTTTGTAATTCTCGA 120
Query 116 TTTTTTGTACGTGTAAAGAAG 136
||||| |||||||||||||
Sbjct 121 TTTTT---ACGTGTAAAGAAG 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5