BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72460.1
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316211 jgi|Araly1|316211|fgenesh1_pm.C_scaffold_2001244 3009 0.0
> Ahg316211 jgi|Araly1|316211|fgenesh1_pm.C_scaffold_2001244
Length=1935
Score = 3009 bits (1629), Expect = 0.0
Identities = 1836/1938 (95%), Gaps = 6/1938 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGTGGCTTGGCTAATCTGGCCAATCGTGCTATCTCTAACAGCACTTTCTGCGAAT 60
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGTGGCCTGGCTAATCTGGCCGTTCGTGCTATCTCTAACAGCACTTTCTGCGAAT 60
Query 61 TCGATAACCGAATCAGAATCTTTATTGAAATTCAAGAAGTCCTTAAACAACACCAAGTCT 120
||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct 61 TCGATAACCGAATCAGAATCTTTGTTGAAATTCAAGAAGTCATTAACCAACACCAAGTCT 120
Query 121 CTTGATTCTTGGACACCAGAGTCAGAACCTTGTGGAGCAAGCCAACGATGGATCGGATT- 179
|||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 121 CTTGATTCTTGGACACCAGATTCAGAGCCTTGTGGAGAAAGCCAACGATGGATCGGATTG 180
Query 180 ACTCTGCAACAAAAACTCTGTCTTTGGCCTCCAGATCGAACAAATGGGTCTATCAGGAAA 239
| | |||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 181 A-TATGCAACAAAAACTCTGTCTTTGGCCTTCAAATCGAACAGATGGGTCTATCAGGAAA 239
Query 240 AGTTGATGTCGCTCCGTTAAAAGACCTACCATCTTTACGCACCATAAGCATAATGAACAA 299
||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct 240 AGTTGATGTCGCTCCATTAAAAGACTTACCCTCTTTACGCACCATCAGCATAATGAACAA 299
Query 300 CTCTTTCTCTGGTGACATACCCGAGTTTAACAGATTAACCGCTCTGAAGTCGCTTTACAT 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCTTTCTCCGGTGACATACCCGAGTTTAACAGATTAACCGCTCTGAAGTCGCTTTACAT 359
Query 360 ATCAGGAAATCGATTCTCTGGTAACATTCCTTCTGATTATTTCGAAACAATGGTGTCGCT 419
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 360 ATCAGGAAATCGATTCTCTGGTAACATCCCTTCTGATTATTTCGAAACAATGGTATCGCT 419
Query 420 AAAGAAAGCTTGGCTGTCAAACAACCATTTCTCTGGTCTCATTCCTATCTCATTGGCAAC 479
||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 420 AAAGAAAGCGTGGCTGTCAAACAACGAGTTCTCTGGTCTCATTCCTATCTCATTGGCAAC 479
Query 480 TACATTGCCAAATCTCATTGAGTTACGCCTCGAAAATAATCAATTCATCGGGAGTATACC 539
|||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 480 TACATTGCCAAATCTCATAGAGTTACGCCTCGAAAACAATCAGTTCATCGGAAGTATACC 539
Query 540 TAATTTCACACAAACGACTTTAGCTATTGTTGATCTATCAAACAACCAACTAACCGGAGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAATTTCACACAAACGACTTTAGCTATTGTTGATCTATCAAACAACCAACTAACCGGAGA 599
Query 600 AATACCTCCCGGTTTGTTGAAATTCGACGCGAAGACTTTTGCGGGGAATTCTGGCCTTTG 659
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 600 AATACCTCCCGGTTTGTTGAAATTCGACGCCAAGAGTTTTGCGGGGAATTCTGGCCTTTG 659
Query 660 CGGTGCCAAGCTATCCACTCCATGCCCACAACCAAAAAATTCGACTGCATCCATAACGAT 719
|| || |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TGGCGCGAAGCTATCAACTGCATGCCCACAACCAAAAAATTCGACTGCATCGATAACGAT 719
Query 720 AGAAGGAACAATGAAAGATGCAAATAAGAGCAAATACTTTCTAGCATTCAGCACATTAGG 779
|||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 720 AGAAGGAACAATGAAAGATGCAAATAAGAGCAAATACTTTTTAGCATTCGGGACATTAGG 779
Query 780 AGTGCTTCTTATCGTCGTCCTTGTCTCCTTAGCTTTCAGaaaaaagaaaaaGAAGAGACG 839
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 AGTGCTTCTTATCGTCGTGCTTGTCTCCTTAGCTTTCCGAAAAAAGAAAAAGAAGAGACG 839
Query 840 GAGGAAGAAGGCACGTCGTACCTCTGAACAAGACAATAGTGACGACCAACAAATTCAGGT 899
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 GAGGAAGAAGGCACGGCGTACCTCTGAACAAGACAATAGTGATGACCAACAAATTCAGGT 899
Query 900 AACTGTTGAGGGATCAAATAGCTCAAGGCAGAGTAGGAGCAGTCGGTCCGGCGAATTGAA 959
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 900 AACTGTTGAGGGATCAAATAGCTCAAGGCAAAGTAAGAGCAGTCGGTCCGGCGAATTGAA 959
Query 960 TAAAGGAGTGGCGGGGAC-ATCAGACCTAGTTATGGTGAACAAGGAAAAAGGTGTTTTCC 1018
|||||| ||||| ||||| | |||||||||| ||||| ||||||||||||||||||||
Sbjct 960 TAAAGGTGTGGCTGGGACGA-CAGACCTAGTGATGGTCAACAAGGAAAAAGGTGTTTTTG 1018
Query 1019 GTTTATCAGACTTGATGAAAGCGGCGGCTCACGTGCTTGGTAATCCCGGCGGTGGAAGCA 1078
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1019 GTTTATCGGACTTGATGAAAGCGGCGGCTCACGTGCTTGGTAATCCCGGCGGAGGAAGCA 1078
Query 1079 ACCGTCCAAGAAGTAGCGGAGGCGTGGGATCTGCCTACAAAGCGGTTCTTTCAAACGGTG 1138
|||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1079 GCCGTCCTAGCAGTAGCGGAGGGGTGGGATCTGCGTACAAAGCGGTTCTTTCAAACGGTG 1138
Query 1139 TCACGGTAGTGGTGAAACGTGTGACGGTAATGAATCAAGTGAGTGTTGACGTATTCGACA 1198
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1139 TCACGGTAGTGGTGAAACGTGTGACAGTAATGAACCAAGTGAGTGTTGACGTATTCGACA 1198
Query 1199 AGGAGATTAGGAAACTAGGAAGCTTGCAACACAAGAACGTATTAACGCCCCTAGCTTACC 1258
||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct 1199 AGGAGATTAGGAAACTAGGAAGCTTGCGACACAAGAACATATTAACGCCTCTAGCTTACC 1258
Query 1259 ATTTCCGACAAGACGAGAAATTGCTAGTGTTCGAATTTGTTCCTAATTTGAATTTGCTTC 1318
||||||||| ||||||||||||||||||||| ||||| ||||||||| ||| ||||||||
Sbjct 1259 ATTTCCGACGAGACGAGAAATTGCTAGTGTTTGAATTCGTTCCTAATCTGAGTTTGCTTC 1318
Query 1319 ACCGATTACACGGAGACCACGAAGAATTTCAATTAGATTGGCCTTCTCGACTCAAAATCA 1378
||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1319 ACCGATTACACGGCGATCACGAAGAATTTCAACTAGATTGGCCTTCTCGACTCAAAATCA 1378
Query 1379 TTCAAGGAATCGCTAGGGGAATGTGGTATCTCCATAGAGAATTAGGGTTTCTAAACCTAC 1438
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1379 TTCAAGGAATCGCTAGAGGAATGTGGTATCTCCATAGAGAATTAGGGTTTTTAAACCTAC 1438
Query 1439 CACATGGAAACCTAAAATCAAGCAATATATTTCTTGCGGAAGACGGCGAGCCACTCATCT 1498
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CACATGGAAACCTAAAATCGAGCAATATATTTCTTGCGGAAGACGGCGAGCCACTCATCT 1498
Query 1499 CCGAATTTGGACTTCAAAAACTAATCAATCCCGACGCTCAATCTCAATCTCTCGTCGCGT 1558
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1499 CCGAATTCGGACTTCAAAAACTAATCAATCCAGACGCTCAATCTCAATCTCTCGTTGCAT 1558
Query 1559 TTAAATCTCCAGAAGCGGATCGTGATGGAACCGTCTCTGCGAAATCTGATGTATTTAGTT 1618
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1559 ATAAATCTCCAGAAGCGGATCGTGATGGAACCGTCTCTGCAAAATCTGATGTGTTTAGTT 1618
Query 1619 TCGGAGTCGTGGTACTTGAGATCTTGACCGGAAAATTCCCGTCTCAATACGCTGGTTTGA 1678
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1619 TCGGAGTCGTGGTTCTTGAGATCTTGACCGGAAAATTCCCGTCTCAATACGCCGGTTTGA 1678
Query 1679 ACAGAGCCGGTGGGGCAAATTTGGTTGAGTGG-TTAGGCTCCGCATTGGAACAAGGTGGT 1737
||||||||||||||||||||||||| |||||| || || ||||| ||| ||||||||||
Sbjct 1679 ACAGAGCCGGTGGGGCAAATTTGGTGGAGTGGATT-GGATCCGCCGTGGTACAAGGTGGT 1737
Query 1738 TGGATGGATCTGCTTCATCCGATGGTGGTAACCGCCGCCGCTGAAGATAAAATTATGGAG 1797
|||||||||||||||||||||| |||||| || ||||||||||||||||||||| | |||
Sbjct 1738 TGGATGGATCTGCTTCATCCGACGGTGGTTACAGCCGCCGCTGAAGATAAAATTTTAGAG 1797
Query 1798 GAGGAAATTGAGAACGTTTTAAGGATCGGTGTGAGATGTACCAGAGAAGATCCAGATCAG 1857
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1798 GAGGAAATTGAGAACGTTTTAAGAATCGGTGTGAGATGTACCGGAGAAGATCCAGATCAG 1857
Query 1858 AGACCGAATATGACTGAAGTCGTTGATGAACTGACTATTGAAGATTCTAACGACGACTTT 1917
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1858 AGACCGAATATGACTGAAGTCGTCGATGAACTGACTATCGAAGATTCTAACGACGACTTT 1917
Query 1918 ATCACCATAGAAACTTAG 1935
||||||||||||||||||
Sbjct 1918 ATCACCATAGAAACTTAG 1935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72714277705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5