BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72470.1 Length=2203 Score E Sequences producing significant alignments: (Bits) Value Ahg926612 jgi|Araly1|926612|scaffold_202173.1 3011 0.0 > Ahg926612 jgi|Araly1|926612|scaffold_202173.1 Length=1939 Score = 3011 bits (1630), Expect = 0.0 Identities = 1831/1929 (95%), Gaps = 9/1929 (0%) Strand=Plus/Plus Query 49 TATTATTCACATGAAACAATGGAACCACATGACCAAACTCACGGCGGCGACGGAGGAGAA 108 |||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 3 TATTATTCTCATGAAACAATGGAACCACATGAACAAACTCACAGCGGCGACGGAGGAGGT 62 Query 109 GG-AGAGAACTGTTCAGTTTCCGGATTCGATTCAGCTGAAAAAGTCATCATCCGATGGGA 167 || ||| |||||||||||||||| |||||||| | ||| |||||||||||||||||||| Sbjct 63 GGTGGAG-ACTGTTCAGTTTCCGGTTTCGATTCGGTTGAGAAAGTCATCATCCGATGGGA 121 Query 168 CGCGACGGCGTCAGAAGAAGCAAGAGAGAAGATGATATTCAACGATCCACAAGAAGTTAA 227 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 CGCAACGGCGTCAGAAGAAGCAAGAGAGAAGATGATATTCAACGATCCACAAGAAGTTAA 181 Query 228 CCTTTACCTCAACGCCGTCGATGAAATCCAGAAA-TATGTATCTTCCGGCGGAGAGATTG 286 |||| |||||||||||||||||||||||| ||| | |||||||||||| ||||| |||| Sbjct 182 GCTTTTCCTCAACGCCGTCGATGAAATCCA-AAAGTTTGTATCTTCCGGTGGAGAAATTG 240 Query 287 AGAATCGAGCTAATTCAGCTATCCAGATAGCTATGGCTCGTCTTGAAGACGAGTTCAGGA 346 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| Sbjct 241 AGAATCGAGCTAATTCAGCTATCCAGATCGCTATGGCTCGTCTCGAAGACGAGTTCCGGA 300 Query 347 ATATTCTCGTTTCTCATAGTTCTCCGATCAACTCTGATTCGTTAATGCTGTCTTCTTCAT 406 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | Sbjct 301 ATATTCTCGTTTCTCATAGTTCTCCGATCAACTCTGATTCGTTAATGTTGTCGTCTTCGT 360 Query 407 CTTCTTCTCACCTTGAGGTTGATGAAGATGGAAGTAGTAGTAATAATGGTAACGAAGAAG 466 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CTTCTTCTCAGCTTGAGGTTGATGAAGATGGAAGTAGTAGTAATAATGGTAACGAAGAAG 420 Query 467 ATGATCAACAAGAGGAAGAAGAAACGGATCTTCTGAAACGATCCGGTTCAAGTGCAAGTA 526 ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 ATG---AGCAAGAGGAAGAAGAAACGGATCTTCTGAAACGATCCGGTTCGAGTGCAAGTA 477 Query 527 CCGGTTCAGCGACGGTTCGATTACCAACCGGAAGAGGTAGTTACAGTAGATCCACCAGTA 586 ||||||||||| ||||||||||||| || || |||||||||||||||||||||||||||| Sbjct 478 CCGGTTCAGCGGCGGTTCGATTACCGACGGGGAGAGGTAGTTACAGTAGATCCACCAGTA 537 Query 587 GTATACGCGAGATCGAGCTGATTCCGATCGAATCGGTGATTCATCTGAGCTGGATTGCTC 646 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 538 GTATACGCGAGATCGAGCTGATTCCGATCGAATCGGTGGTGCATCTGAGCTGGATTGCTC 597 Query 647 GGCGAATGGTCTCCGCCGGTTATCTCCGTGAATGTATTCAAGTCTACGGAAGCGTTCGCA 706 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 598 GGCGAATGGTCTCCGCCGGTTATCTCCGTGAATGTATTCAAGTGTACGGAAGCGTTCGCA 657 Query 707 AATCCGCCGTCGATTCAAGTTTCCGACGGTTAGGGATCGAGAAACTCAGCATCGGAGATG 766 |||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 658 AATCCGCCGTTGATTCGAGTTTCCGGCGGTTAGGGATCGAGAAACTTAGCATCGGAGATG 717 Query 767 TTCAGAGGCTAAATTGGGAAGCGCTTGAGCAGAAGATCCGTCGTTGGATCCGAGCAGCTA 826 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 718 TTCAGAGGTTAAATTGGGAAGCGCTTGAGCAGAAGATCCGTCGTTGGATCCGAGCCGCTA 777 Query 827 AGATCTGTGTGAGAGTTGTGTTCGCAAGCGAGAAATTGCTCTGTGAGCATGTTTTTGAAA 886 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 778 AGATCTGTGTGAGAGTTGTCTTCGCGAGCGAGAAATTGCTCTGTGAGCATGTTTTTGAAA 837 Query 887 GCGTTGGAGCTGTCAATATCCACGAAGCTTGTTTCATGGAAACAGTCAAAGGTCCGGCGA 946 |||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||| Sbjct 838 GCGTCGGAGCTGTCAACATCCACGAAGCTTGTTTCATGGAAACCGTTAAAGGTCCGGCGA 897 Query 947 TTCAGCTTTTTAACTTCGCGGAGGCGATTAGTATCAGTCGGAGATCGCCGGAGAAGCTTT 1006 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 898 TTCAGCTGTTTAACTTCGCGGAGGCGATTAGTATCAGCCGGAGATCGCCGGAGAAGCTTT 957 Query 1007 TTAAGATCCTTGATCTACACGACGCTTTGATTGAGCTTTTGCCTGATATCGAGTCAGTTT 1066 | |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| || | Sbjct 958 TCAAGATCCTTGATCTCCATGACGCTTTGATTGAGCTATTGCCGGATATCGAGTCGGTCT 1017 Query 1067 TCGATCTGAAATCTTCAGATTCGATTAGAGTTCAAGCGGCGGAGATATTATCGAGATTAG 1126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1018 TCGATCTGAAATCTTCAGATTCGATTAGAGTTCAAGCGGCGGAGATATTATCGAGATTGG 1077 Query 1127 CGGAAGCGGCGAGAGGGATATTATCGGAATTCGAAAACGCCGTTCTTCGTGAACCTTCTA 1186 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1078 CGGAAGCTGCGAGAGGGATATTATCGGAATTCGAAAACGCCGTTCTCCGTGAACCTTCTA 1137 Query 1187 GAGTTCCTGTTCCTGGAGGTACGATACATCCATTGACGAGGTATGTCATGAACTACATAA 1246 ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct 1138 GAGTTCCAGTTCCTGGAGGTACGATACATCCATTGACGAGGTACGTGATGAACTACATTA 1197 Query 1247 GCTTGATCTCAGAGTATAGACCAACGTTGATCGATCTCATCATGTCGAAACCATCGAGAA 1306 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1198 GCTTGATCTCAGAGTATAGACCAACGTTAATCGATCTCATCATGTCGAAGCCATCGAGAA 1257 Query 1307 ACGCAACGGATTCAAACACTCCAGATTTCGATTTCTCTGAGTTAGAGAATAACAAAGGTC 1366 || |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1258 ACTCAACGGATTCAAACACTCCAGATTTCGATTTCTCGGAGTTAGAGAACAACAAAGGTC 1317 Query 1367 CATTAGCACTTCATTTGATTTGGATCATAGTGATATTGCAATTCAATCTCGAAGGCAAAT 1426 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1318 CATTAGCACTTCATTTGATTTGGATCATAGTGATCTTGCAATTCAATCTTGAAGGCAAAT 1377 Query 1427 CAAAGTACTATAAAAACGCAGCTTTATCACATCTCTTT-ATCATGAACAACGCACATTAC 1485 ||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||| Sbjct 1378 CAAAGTACTATAAAAACGCAGCTCTATCGCATCT-TTTCATCATGAACAACGCACATTAC 1436 Query 1486 ATTGTTCAGAAGATTAAAGGGTCACCGGAGCTACGGGAAATGATTGGTGATCTTTACTTG 1545 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 1437 ATTGTTCAGAAGATTAAAGGGTCGCCGGAGTTACGGGAAATGATTGGTGATCTTTACTTG 1496 Query 1546 AGGAAGCTAACGGGTAAGTTTAGGCAAGCTGCGACGTATTACCAAAGAGCTGCTTGGGTT 1605 || ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1497 AGAAAGCTAACGGGTAAGTTCAGGCAAGCCGCGACGTATTACCAAAGAGCTGCTTGGGTT 1556 Query 1606 AAAGTCTTGTATTGTTTAAGAGATGAAGGTTTACATACGAAAGGAAGTTTCTCATCAGGT 1665 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1557 AAAGTCTTGTATTGTTTAAGAGATGAAGGGTTACATACAAAAGGAAGTTTCTCATCAGGC 1616 Query 1666 GTTTCGAGAAGTGCGTTGAGAGAGAGGTTTAAATCTTTTAATGCTTTGTTTGAGGAAGTT 1725 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1617 GTTTCGAGAAGTGCGTTGAGAGAGAGGTTTAAATCTTTTAATGCTTTGTTTGAGGAAGTT 1676 Query 1726 CATAGGGTTCAATCACAATGGTTGGTTCCGGATTCTCAGCTGAGGGAAGAGTTGAAGATT 1785 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1677 CATAGGGTTCAATCACAATGGTTGGTTCCAGATTCTCAGCTGAGGGAAGAGCTGAAGATT 1736 Query 1786 TCGATATTGGAGAAGCTTAGTCCCGCTTATAGATCGTTTCTTGGGAGGTTCAGGAGTCAT 1845 ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct 1737 TCGATATTGGAGAAGCTTAGTCCAGCTTACAGATCGTTTCTCGGGAGGTTCAGGAGTCAC 1796 Query 1846 ATAGAGAGCGGGAAACATCCGGAGAATTACATCAAGATCTCAGTCGAAGATCTAGAGACC 1905 |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1797 ATAGAGAGTGGGAAACACCCGGAGAATTACATCAAGATCTCAGTTGAAGATCTAGAGACC 1856 Query 1906 GAGGTTCTTGATTTGTTCGAGGGGTATTCTGCAACTCAGCATCTGAGAAGACGATCCGAG 1965 ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1857 GAGGTTCTTGACTTGTTTGAGGGGTGTTCTGCAACTCAGCATCTGAGAAGACGATCCGAG 1916 Query 1966 Tgagagaga 1974 ||||||||| Sbjct 1917 TGAGAGAGA 1925 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82922463365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5