BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72470.1
Length=2203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926612 jgi|Araly1|926612|scaffold_202173.1 3011 0.0
> Ahg926612 jgi|Araly1|926612|scaffold_202173.1
Length=1939
Score = 3011 bits (1630), Expect = 0.0
Identities = 1831/1929 (95%), Gaps = 9/1929 (0%)
Strand=Plus/Plus
Query 49 TATTATTCACATGAAACAATGGAACCACATGACCAAACTCACGGCGGCGACGGAGGAGAA 108
|||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 3 TATTATTCTCATGAAACAATGGAACCACATGAACAAACTCACAGCGGCGACGGAGGAGGT 62
Query 109 GG-AGAGAACTGTTCAGTTTCCGGATTCGATTCAGCTGAAAAAGTCATCATCCGATGGGA 167
|| ||| |||||||||||||||| |||||||| | ||| ||||||||||||||||||||
Sbjct 63 GGTGGAG-ACTGTTCAGTTTCCGGTTTCGATTCGGTTGAGAAAGTCATCATCCGATGGGA 121
Query 168 CGCGACGGCGTCAGAAGAAGCAAGAGAGAAGATGATATTCAACGATCCACAAGAAGTTAA 227
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CGCAACGGCGTCAGAAGAAGCAAGAGAGAAGATGATATTCAACGATCCACAAGAAGTTAA 181
Query 228 CCTTTACCTCAACGCCGTCGATGAAATCCAGAAA-TATGTATCTTCCGGCGGAGAGATTG 286
|||| |||||||||||||||||||||||| ||| | |||||||||||| ||||| ||||
Sbjct 182 GCTTTTCCTCAACGCCGTCGATGAAATCCA-AAAGTTTGTATCTTCCGGTGGAGAAATTG 240
Query 287 AGAATCGAGCTAATTCAGCTATCCAGATAGCTATGGCTCGTCTTGAAGACGAGTTCAGGA 346
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||
Sbjct 241 AGAATCGAGCTAATTCAGCTATCCAGATCGCTATGGCTCGTCTCGAAGACGAGTTCCGGA 300
Query 347 ATATTCTCGTTTCTCATAGTTCTCCGATCAACTCTGATTCGTTAATGCTGTCTTCTTCAT 406
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 301 ATATTCTCGTTTCTCATAGTTCTCCGATCAACTCTGATTCGTTAATGTTGTCGTCTTCGT 360
Query 407 CTTCTTCTCACCTTGAGGTTGATGAAGATGGAAGTAGTAGTAATAATGGTAACGAAGAAG 466
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTCTTCTCAGCTTGAGGTTGATGAAGATGGAAGTAGTAGTAATAATGGTAACGAAGAAG 420
Query 467 ATGATCAACAAGAGGAAGAAGAAACGGATCTTCTGAAACGATCCGGTTCAAGTGCAAGTA 526
||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 ATG---AGCAAGAGGAAGAAGAAACGGATCTTCTGAAACGATCCGGTTCGAGTGCAAGTA 477
Query 527 CCGGTTCAGCGACGGTTCGATTACCAACCGGAAGAGGTAGTTACAGTAGATCCACCAGTA 586
||||||||||| ||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 478 CCGGTTCAGCGGCGGTTCGATTACCGACGGGGAGAGGTAGTTACAGTAGATCCACCAGTA 537
Query 587 GTATACGCGAGATCGAGCTGATTCCGATCGAATCGGTGATTCATCTGAGCTGGATTGCTC 646
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 538 GTATACGCGAGATCGAGCTGATTCCGATCGAATCGGTGGTGCATCTGAGCTGGATTGCTC 597
Query 647 GGCGAATGGTCTCCGCCGGTTATCTCCGTGAATGTATTCAAGTCTACGGAAGCGTTCGCA 706
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 GGCGAATGGTCTCCGCCGGTTATCTCCGTGAATGTATTCAAGTGTACGGAAGCGTTCGCA 657
Query 707 AATCCGCCGTCGATTCAAGTTTCCGACGGTTAGGGATCGAGAAACTCAGCATCGGAGATG 766
|||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 658 AATCCGCCGTTGATTCGAGTTTCCGGCGGTTAGGGATCGAGAAACTTAGCATCGGAGATG 717
Query 767 TTCAGAGGCTAAATTGGGAAGCGCTTGAGCAGAAGATCCGTCGTTGGATCCGAGCAGCTA 826
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 TTCAGAGGTTAAATTGGGAAGCGCTTGAGCAGAAGATCCGTCGTTGGATCCGAGCCGCTA 777
Query 827 AGATCTGTGTGAGAGTTGTGTTCGCAAGCGAGAAATTGCTCTGTGAGCATGTTTTTGAAA 886
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 778 AGATCTGTGTGAGAGTTGTCTTCGCGAGCGAGAAATTGCTCTGTGAGCATGTTTTTGAAA 837
Query 887 GCGTTGGAGCTGTCAATATCCACGAAGCTTGTTTCATGGAAACAGTCAAAGGTCCGGCGA 946
|||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 838 GCGTCGGAGCTGTCAACATCCACGAAGCTTGTTTCATGGAAACCGTTAAAGGTCCGGCGA 897
Query 947 TTCAGCTTTTTAACTTCGCGGAGGCGATTAGTATCAGTCGGAGATCGCCGGAGAAGCTTT 1006
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 898 TTCAGCTGTTTAACTTCGCGGAGGCGATTAGTATCAGCCGGAGATCGCCGGAGAAGCTTT 957
Query 1007 TTAAGATCCTTGATCTACACGACGCTTTGATTGAGCTTTTGCCTGATATCGAGTCAGTTT 1066
| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| || |
Sbjct 958 TCAAGATCCTTGATCTCCATGACGCTTTGATTGAGCTATTGCCGGATATCGAGTCGGTCT 1017
Query 1067 TCGATCTGAAATCTTCAGATTCGATTAGAGTTCAAGCGGCGGAGATATTATCGAGATTAG 1126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 TCGATCTGAAATCTTCAGATTCGATTAGAGTTCAAGCGGCGGAGATATTATCGAGATTGG 1077
Query 1127 CGGAAGCGGCGAGAGGGATATTATCGGAATTCGAAAACGCCGTTCTTCGTGAACCTTCTA 1186
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1078 CGGAAGCTGCGAGAGGGATATTATCGGAATTCGAAAACGCCGTTCTCCGTGAACCTTCTA 1137
Query 1187 GAGTTCCTGTTCCTGGAGGTACGATACATCCATTGACGAGGTATGTCATGAACTACATAA 1246
||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1138 GAGTTCCAGTTCCTGGAGGTACGATACATCCATTGACGAGGTACGTGATGAACTACATTA 1197
Query 1247 GCTTGATCTCAGAGTATAGACCAACGTTGATCGATCTCATCATGTCGAAACCATCGAGAA 1306
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1198 GCTTGATCTCAGAGTATAGACCAACGTTAATCGATCTCATCATGTCGAAGCCATCGAGAA 1257
Query 1307 ACGCAACGGATTCAAACACTCCAGATTTCGATTTCTCTGAGTTAGAGAATAACAAAGGTC 1366
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1258 ACTCAACGGATTCAAACACTCCAGATTTCGATTTCTCGGAGTTAGAGAACAACAAAGGTC 1317
Query 1367 CATTAGCACTTCATTTGATTTGGATCATAGTGATATTGCAATTCAATCTCGAAGGCAAAT 1426
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1318 CATTAGCACTTCATTTGATTTGGATCATAGTGATCTTGCAATTCAATCTTGAAGGCAAAT 1377
Query 1427 CAAAGTACTATAAAAACGCAGCTTTATCACATCTCTTT-ATCATGAACAACGCACATTAC 1485
||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||
Sbjct 1378 CAAAGTACTATAAAAACGCAGCTCTATCGCATCT-TTTCATCATGAACAACGCACATTAC 1436
Query 1486 ATTGTTCAGAAGATTAAAGGGTCACCGGAGCTACGGGAAATGATTGGTGATCTTTACTTG 1545
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1437 ATTGTTCAGAAGATTAAAGGGTCGCCGGAGTTACGGGAAATGATTGGTGATCTTTACTTG 1496
Query 1546 AGGAAGCTAACGGGTAAGTTTAGGCAAGCTGCGACGTATTACCAAAGAGCTGCTTGGGTT 1605
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1497 AGAAAGCTAACGGGTAAGTTCAGGCAAGCCGCGACGTATTACCAAAGAGCTGCTTGGGTT 1556
Query 1606 AAAGTCTTGTATTGTTTAAGAGATGAAGGTTTACATACGAAAGGAAGTTTCTCATCAGGT 1665
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1557 AAAGTCTTGTATTGTTTAAGAGATGAAGGGTTACATACAAAAGGAAGTTTCTCATCAGGC 1616
Query 1666 GTTTCGAGAAGTGCGTTGAGAGAGAGGTTTAAATCTTTTAATGCTTTGTTTGAGGAAGTT 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GTTTCGAGAAGTGCGTTGAGAGAGAGGTTTAAATCTTTTAATGCTTTGTTTGAGGAAGTT 1676
Query 1726 CATAGGGTTCAATCACAATGGTTGGTTCCGGATTCTCAGCTGAGGGAAGAGTTGAAGATT 1785
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1677 CATAGGGTTCAATCACAATGGTTGGTTCCAGATTCTCAGCTGAGGGAAGAGCTGAAGATT 1736
Query 1786 TCGATATTGGAGAAGCTTAGTCCCGCTTATAGATCGTTTCTTGGGAGGTTCAGGAGTCAT 1845
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 1737 TCGATATTGGAGAAGCTTAGTCCAGCTTACAGATCGTTTCTCGGGAGGTTCAGGAGTCAC 1796
Query 1846 ATAGAGAGCGGGAAACATCCGGAGAATTACATCAAGATCTCAGTCGAAGATCTAGAGACC 1905
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1797 ATAGAGAGTGGGAAACACCCGGAGAATTACATCAAGATCTCAGTTGAAGATCTAGAGACC 1856
Query 1906 GAGGTTCTTGATTTGTTCGAGGGGTATTCTGCAACTCAGCATCTGAGAAGACGATCCGAG 1965
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1857 GAGGTTCTTGACTTGTTTGAGGGGTGTTCTGCAACTCAGCATCTGAGAAGACGATCCGAG 1916
Query 1966 Tgagagaga 1974
|||||||||
Sbjct 1917 TGAGAGAGA 1925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82922463365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5