BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72480.1
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926613 jgi|Araly1|926613|scaffold_202174.1 2553 0.0
> Ahg926613 jgi|Araly1|926613|scaffold_202174.1
Length=1575
Score = 2553 bits (1382), Expect = 0.0
Identities = 1503/1563 (96%), Gaps = 2/1563 (0%)
Strand=Plus/Plus
Query 6 TCTCTGCAACGAATTGGGTTTACAATGTTGCTCCATCTTCTTCTTCTGCTATGTCT-ATC 64
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 TCTCTGCAACAAATTGGGTTTACAATGTTGCTCCATCTTCTTCTTCTGCTATGTCTGA-C 59
Query 65 TTCTTCTTTGAAAGTTCAAGCATCGGTGCATGAGTACCGAAGCGAGAGATTCGTGTCTAA 124
||||||||||| ||| ||||| ||||||||||||||||||| |||||||||| |||||||
Sbjct 60 TTCTTCTTTGATAGTCCAAGCGTCGGTGCATGAGTACCGAAACGAGAGATTCATGTCTAA 119
Query 125 AGGTAACGCCTTTGTCTTCCATGGTGGCAGTGAAGGCATCTACTCCTCTTCTCCCTCCGA 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 120 AGGTAACGCCTTTGTCTTCCATGGTGGCAGTGAAGGCATCTACTCTTCTTCTCCCTCTGA 179
Query 185 TAACTTCACTTCCGACTCCGATTCCGTTTCCTTTATCCGGTTTGAGAAGATCAAGTTTCA 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 TAACTTCACTTCCGACTCCGATTCCGCTTCCTTTATCCGGTTTGAGAAGATCAAGTTTCA 239
Query 245 GAGGCCTGAGGAAGTGTCTAACCGATCCTCGTTATCTATCCATGCCGTGGTTTTCGAGGT 304
|||| |||||||||| |||||| ||||||| ||| || |||| |||||||||||||||||
Sbjct 240 GAGGTCTGAGGAAGTTTCTAACAGATCCTCATTACCTGTCCAAGCCGTGGTTTTCGAGGT 299
Query 305 AGAGGACCGGGAAAACATTGGAGGATCTGCTTATGGTGGGCAAAGAGCTGTGTGTTGCAC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAGGACCGGGAAAACATTGGAGGATCTGCTTATGGTGGGCAAAGAGCTGTGTGTTGCAC 359
Query 365 ATCTGATCTGGCAAAACTCGGTGTTTGCTCACACGGAGATGTCATTTACCGTCCTTCTGC 424
|||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 360 ATCTGATCTGGCGAAACTCGGCGTTTGCTCACACGGAGACGTCATTTACCGCCCTTCTGC 419
Query 425 TAAAGATTCTGGTTGGCCACAAGTGTTTGGTGTCTCGTTGGCTGAGAATGAGTTTTCTGT 484
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 420 TAAAGATTCTGGCTGGCCACAAGTGTTTGGTGTCTCGTTTGCTGAGAATGAGTTATCTGT 479
Query 485 TATACTGCCTACAAGATCGATCCAGGTCACTAGGACCGGGATGTACAACCTCTACTTCAT 544
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACGCTGCCTACAAGATCGATCCAGGTCACTAGGACCGGGATGTACAACCTCTACTTCAT 539
Query 545 TCATTGTGATTCTGATCTCAAGGATTTGGTTGTTGAAGGGAAGACCATTTGGAAAAACCC 604
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCACTGTGATTCTGATCTCAAGGATTTGGTTGTTGAAGGGAAGACCATTTGGAAAAACCC 599
Query 605 TACTGGATATCTACCTGGTAGAATGGCTCCATTGATGTACTTTTACGGGTTCATGTCGCT 664
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TACCGGATATCTACCCGGTAGAATGGCTCCATTGATGTACTTTTACGGGTTCATGTCGCT 659
Query 665 TGCTTTTGTGTTGCTTGGCATCTTCTGGTTTTCTCAGTGTGCTAGATTCTGGAGAGAAGT 724
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TGCTTTTGTGTTGCTTGGCATCTTCTGGTTTTCGCAGTGTGCTAGATTCTGGAGAGAAGT 719
Query 725 GCTTCCGTTGCAAAATTGCTTAACTCTGGTGATAACATTGGGGATGTGTGAGATGGCACT 784
|||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 720 GCTTCCGTTGCAGAATTGCTTAACTTTGGTGATAACACTGGGGATGTGTGAGATGGCACT 779
Query 785 TTGGTATTTTGATTACGCTGAATTCAATGAGACTGGGATTAGGCCAACCGTGATCACCAT 844
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 780 TTGGTATTTTGATTACGCTGAATTCAATGAGACTGGGATCAGGCCAACCGTCATCACCAT 839
Query 845 CTGGGCAGTCACGTTCGGTTCTATCAAGCGTACGAGTGCTCGTATTATCATCTTGATGGT 904
|||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 840 CTGGGCGGTCACGTTCGGTTCTATCAAGCGTACAAGTGCTCGTATTATCATCCTGATGGT 899
Query 905 TTCAATGGGCTACGGTGTTGTGAGACCTACGCTCGGGGGATTCACATCAAAGGTTATCAT 964
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 TTCAATGGGCTACGGTGTTGTGAGACCTACGCTCGGGGGTTTCACATCAAAGGTTATCAT 959
Query 965 GCTTGGGGTCACCTTCTTTATTGCATCTGAAATTCTTGAGCTGATGGAAAATGTGGGTGC 1024
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 GCTTGGGGTCACCTTCTTTATTGCATCTGAAATTCTTGAGCTGATGGAAAATGTCGGTGC 1019
Query 1025 TGTCAGTGATCTCTCAGGGAAAGCTCGACTGTTTTTCGTTCTTCCTGTTGCAATATTGGA 1084
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 TGTCAGTGATCTCTCAGGGAAAGCTCGACTGTTTTTCGTCCTTCCTGTTGCAATATTGGA 1079
Query 1085 TGCGTTCTTCATCATATGGATATTCAAATCTCTCTCTGCTACTTTCAAGAAGCTTCAGAC 1144
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1080 TGCGTTCTTCATCATATGGATATTCAAATCTCTTTCTGCTACGTTCAAGAAGCTTCAGAC 1139
Query 1145 CAGAAGGTTGTTGGTCAAGTTGGATATATACAGAAAATTCACAAATGCTTTGGCTGTAGA 1204
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1140 CAGAAGGTTGTTGGTCAAGTTGGATATATACAGAAAGTTCACAAATGCTTTGGCCGTAGC 1199
Query 1205 CATATTGGTTTCCTTAGGTTGGATTTGCTACGAGCTTTATTTCAAGTCGAAGGATGTTTA 1264
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CATTTTGGTTTCCTTGGGTTGGATTTGCTACGAGCTTTATTTCAAGTCGAAGGATGTTTA 1259
Query 1265 CAACGAACATTGGCAAAACGCTTGGATCATCCCAGCCTTTTGGCAACTGCTATCCTTCTC 1324
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1260 CAACGAACATTGGCAAAACGCTTGGATTATCCCGGCCTTTTGGCAACTGCTCTCCTTCTC 1319
Query 1325 GCTCCTAATTGTTATCTGCTCTCTCTGGGCTCCATCTCAGAACTCGACTAGGTACGCATT 1384
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GCTCCTAATTGTCATCTGCTCTCTCTGGGCTCCATCTCAGAACTCGACTAGGTACGCATT 1379
Query 1385 CTCTGGATCTTCTGGAGATACAAGCGCAGAGTTTGAGAAGGACGATTACACGCTAACCCT 1444
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1380 CTCTGGATCTTCTGGAGATACAAGCGCAGAGTTTGAGAAGGACGATTACACACTAACTCT 1439
Query 1445 CATTAAACCATCTCCAATTCCTTCTCATGAAGTCAAGAACCTCTCAGAAACCAGACTTTT 1504
|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 1440 CATTAAACCATCTCCAGTTCCTTCTCACGATGTCAAGAACCTCTCAGAAACCAGACTTTT 1499
Query 1505 ACCAGCTGATGAAGGAGAACCAGAAAAAGATTTGGAGGAAGACAAAAGGGAGTAAAGAAG 1564
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1500 ACAAGCTGATGAAGGAGAACCAGAAAAAGATTTGGAGGAAGACAAAAGGGAGTAAAGTAG 1559
Query 1565 TGA 1567
|||
Sbjct 1560 TGA 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67762545855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5