BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72490.1 Length=1619 Score E Sequences producing significant alignments: (Bits) Value Ahg476382 jgi|Araly1|476382|fgenesh2_kg.2__1512__AT1G72490.1 1450 0.0 Ahg471945 jgi|Araly1|471945|fgenesh2_kg.1__1899__AT1G17400.1 315 9e-85 > Ahg476382 jgi|Araly1|476382|fgenesh2_kg.2__1512__AT1G72490.1 Length=1316 Score = 1450 bits (785), Expect = 0.0 Identities = 1036/1153 (90%), Gaps = 33/1153 (3%) Strand=Plus/Plus Query 291 ttcttcCGGGTCACTAAGACATGAAGTTTTTCGGGTGGATGCAGAACAAGCTACATGGGA 350 |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 143 TTCTTCTTGGTCATTAAGACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTACATGGGA 202 Query 351 AACAAGAGA-T--TACTCATAGACCAAGCATATCCTCTGCTTCTTCTCATCATCCGAGAG 407 |||||| || | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 203 AACAAGGGATTAATACTCATAGACCAAGCATATCCTCTGTTTCTTCTCATCAACCGAGAG 262 Query 408 AGGAGTTTAACGATTGGCCTCACGGATTACTCGCGATTGGTACATTCGGTAACAAAAAGC 467 ||||||||| |||||||||||| ||| ||||||||||||| || |||||||||||| || Sbjct 263 AGGAGTTTAGCGATTGGCCTCATGGACTACTCGCGATTGGAACGTTCGGTAACAAAGCGC 322 Query 468 AGACACCACAAACACTTGATCAAGAAGTGATTCAAGAAGAGACAGTGTCTAACTTACACG 527 ||||| |||||| | |||||||||||| ||||||||||||||| |||||| | | | | Sbjct 323 AGACATCACAAAAAGTTGATCAAGAAGAGATTCAAGAAGAGACGGTGTCT-A---A-A-G 376 Query 528 TGGAAGGTCGTCAAGCACAAGATACAGATCAAGAGCTTTCTTCCTCCGATGATCTAGAAG 587 ||||| | ||||||||||||||| ||||||||| |||||||| ||||||||||||||| Sbjct 377 TGGAA-G--GTCAAGCACAAGATAGAGATCAAGAACTTTCTTCAACCGATGATCTAGAAG 433 Query 588 AAGATTTCACTCCCGAAGAAGTTGGGAAACTACAGAAGGAGCTGACGAAACTCTTGACGA 647 ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 434 AAGATTTCACTCCAGAGGAAGTTGGGAAACTGCAGAAGGAGCTGACGAAACTCTTGACGA 493 Query 648 GAAGGAGTAAGAAAAGGAAGTCTGATGTGAATCGAGAATTAGCGAATCTTCCTTTGGATA 707 ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 494 GAAGGAGCAAGAAGAGGAAGTCTGATGTGAATCGAGAATTGGCGAATCTTCCTTTGGATA 553 Query 708 GATTCTTGAATTGTCCTTCGAGTCTTGAGGTCGATAGAAGAATCAGTAACGCGCTTTGTG 767 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 554 GATTCTTGAATTGTCCTTCGAGTCTTGAGGTCGATAGAAGAATCAGCAACGCGCTTTGTG 613 Query 768 ATGAGAAGGAGGAAGACATTGAGCGTACAATCAGTGTTATCCTAGGGAGATGCAAAGCTA 827 |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || | Sbjct 614 ATGAGAAGGAAGAAGACATTGAGCGTACAATCAGTGTTATCTTAGGGAGATGCAAGGCGA 673 Query 828 TTTCTACAGAGAGCAAGAACAAGACGAAGAAGAATAAAAGAGATTTGAGCAAAACCTCTG 887 |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| Sbjct 674 TTTCGACAGAGAGCAAGAACAAGACGAAGAAGAGTAAGAGAGACTTGAGCAAAACCTCTG 733 Query 888 TTTCTCATCTTCTCAAGAAGATGTTTGTCTGTACAGAAGGTTTTTCTCCCGTTCCTCGCC 947 ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||| Sbjct 734 TTTCTCATCTTCTCAAGAAGATGTTTGTCTGTACAGAGGGTTTCTCTCCAGTTCCTAGCC 793 Query 948 CTATCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTGAGAATGATGCTAC 1007 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 CTAGCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTGAGAATGATGCTAC 853 Query 1008 ACAAGAAAGTTAACACTCAAGCTTCATCAAAGCAAACATCGACaaaaaaaTACTTGCAAG 1067 |||||||| | ||||||||| |||| | |||||||||||| || |||||||||||||||| Sbjct 854 ACAAGAAAATAAACACTCAAACTTCTTTAAAGCAAACATCAACGAAAAAATACTTGCAAG 913 Query 1068 ACAAGCAACAGCTCTCGTTGAAGAACGAGGAAGAAGAAGGACGAAGCAGTAACGATGGGG 1127 |||||||||| || || |||||||| ||||||||||||| | |||| |||| |||||||| Sbjct 914 ACAAGCAACAACTTTCTTTGAAGAATGAGGAAGAAGAAGAAAGAAGTAGTAGCGATGGGG 973 Query 1128 GGAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGAGATCTGAATATATGGTCCAC 1187 | ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct 974 GTAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGAGATCTGAATATTTGATTCAC 1033 Query 1188 TTTTCCTTTTTCATGTTCTTTCAAGAAAATACAGATAGAGAATCTTCAC--A-AT--ATC 1242 | |||| ||||||||||||||||||||| ||||||||||||||||||| | || ||| Sbjct 1034 TGTTCCCTTTTCATGTTCTTTCAAGAAAGTACAGATAGAGAATCTTCAATGATATCGATC 1093 Query 1243 AAGACAATTTCTTTTTCTCT-C-TGATGAAAAGTTTTTGGGTCTCTCTATCTATCTGCAG 1300 ||||||| || | | | |||||||||||||||||||| |||||||||| Sbjct 1094 AAGACAAAGAAAATT-CAAAACATTCC-AAAAGTTTTTGGGTCTCTCT--CTATCTGCAG 1149 Query 1301 AGAGCCCATGAGTCCCtttttttGCATGGTTGGGTCCATAAAACCAAAACATGTTTTGGG 1360 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1150 AGAGCCCATGAGTCCCTTTTTTTGCATGGTTGGGTCCATAAAACCTAAACATGTTTTGGG 1209 Query 1361 AACTAAA-CATCAGACATCGTACATGAGatatgtatatgcatacatacatgtgtgtatat 1419 ||||||| ||||||| | ||||||||||||| | ||||| || | |||||||||| Sbjct 1210 AACTAAAACATCAGATA--GTACATGAGATATTTGTATGCGTA--T----GTGTGTATAT 1261 Query 1420 g-taaagatagat 1431 ||||||||||| Sbjct 1262 TATAAAGATAGAT 1274 Score = 110 bits (59), Expect = 4e-23 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 97 TCTTTTTCGAAGAAGTGAATCTGGACGAAGAACTAAGGCCGCCAATTTTGGAATTTGAAC 156 ||| ||||||||||||||||||||||||||||||||||||| || ||| |||| |||||| Sbjct 1 TCTCTTTCGAAGAAGTGAATCTGGACGAAGAACTAAGGCCGTCA-TTTCGGAACTTGAAC 59 Query 157 CATCAAATTCATCAA 171 ||||||||||||||| Sbjct 60 CATCAAATTCATCAA 74 Score = 71.3 bits (38), Expect = 2e-11 Identities = 42/44 (95%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 1448 atgtaGTTTTGTATTTTCAGGTGGATAACCTTTGGTTTCTAGAA 1491 |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1273 ATGTAGTTGTGTATTTTCAGGTGGATAACCTTTGGTTTATAGAA 1316 > Ahg471945 jgi|Araly1|471945|fgenesh2_kg.1__1899__AT1G17400.1 Length=1427 Score = 315 bits (170), Expect = 9e-85 Identities = 513/667 (77%), Gaps = 70/667 (10%) Strand=Plus/Plus Query 558 AAGAGCTTTCTTCCTCCGAT-GATCTAGAAGAAGATTTCACTCCCGAAGAAGTTGGGAAA 616 |||||| |||||| || | | ||||| |||||||||||||| || || ||| ||||| Sbjct 471 AAGAGCCTTCTTCTTCTG-TCGATCT---TGAAGATTTCACTCCTGAGGAGGTT-GGAAA 525 Query 617 -CTACAGAAGGAGCTGACGAAACTCTTGACGAGAAGGAGTAAGAAAAGGAAGTCTGATGT 675 | ||||||||| ||| ||| |||||| | ||| | ||||||||||||||||||||| Sbjct 526 GTTGCAGAAGGAGTTGATGAAGCTCTTGTC---AAGAACTAAGAAAAGGAAGTCTGATGT 582 Query 676 GAATCGAGA-ATTA-G-CGAATCTTCCTTTGGATAGATTCTTGAATTGTCCTTCGAGTCT 732 |||| |||| | | | |||||||||||||||||||||||||| ||||| |||||| | Sbjct 583 GAATAGAGAGCTCATGAAAAATCTTCCTTTGGATAGATTCTTGAACTGTCCATCGAGT-T 641 Query 733 T-GAGGTCGATAGAAGAATCAG---T-AAC---GCGCT-TTGT-GA------T---GAG- 772 | ||||||||||| ||||||| | || ||||| |||| || | ||| Sbjct 642 TAGAGGTCGATAGGCGAATCAGCAATGCACTTAGCGCTGTTGTGGATTCGTCTGAGGAGA 701 Query 773 --AAGGAGGAAGACATTGAGCGTACAATCAGTGTTATCCTAGGGAGATGCAAAGCTATTT 830 ||||||||||| || ||||| || || || ||||| ||||| |||||||||| || | Sbjct 702 ATAAGGAGGAAGATATGGAGCGAACGATTAGCGTTATTCTAGGTAGATGCAAAGAGATAT 761 Query 831 CTACAGAGAGCAAGAACAAGACGAAGAAGAATAAAAGAGATTTGAGCAAAACCTCTGTTT 890 | | | |||| || |||| ||| ||||| || |||||| | ||||| |||||||| | Sbjct 762 C-A-ATAGAG--AG--TAAGAAGAATAAGAAGAAGAGAGATATAAGCAAGACCTCTGTCT 815 Query 891 C-TCATCTTCTCAAGAAGATGTTT-GTCTGTACAGAA-GGTTTTTCTCCCGTTCCTCGCC 947 | | ||||| | |||||||| ||| ||||| || || || ||||| | | || ||| Sbjct 816 CAT-ATCTTTTGAAGAAGAT-TTTCGTCTGCGCA-AATGGGATTTCTACAGCCCCAAGCC 872 Query 948 CTATCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTG-AGAATGATGCTA 1006 ||| | ||||||||||| |||||||| ||||||||||||||||| || || |||||||| Sbjct 873 CTAGCCTGAGAGACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAG-ATGATGCTC 931 Query 1007 CACAAGAAAG-TTAACACTCAAGCTTCATC-AAAGCAA-A-CATCGACaa-aaa-a-aTA 1059 || ||| ||| |||| ||||||| || || ||| ||| | ||||||||| ||| | ||| Sbjct 932 CATAAG-AAGATTAATGCTCAAGCCTCCTCGAAACCAACATCATCGACAACAAAGAGATA 990 Query 1060 CTTGCAAGACAAGCAACAGCTCTCGTTGAAGA---ACGAGGAAGAAG--A--AG-G-ACG 1110 |||| |||||||| |||||||||| ||||||| | || ||||||| | || | | | Sbjct 991 CTTGGAAGACAAGAAACAGCTCTCATTGAAGAGTGAAGAAGAAGAAGAAACTAGCGAAAG 1050 Query 1111 AAGCAGTA---ACGATGGGGGGAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGA 1167 ||| |||| ||| || ||||||||||||||||||||||||||||| |||||||| Sbjct 1051 AAGAAGTAGTGGCGACGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTTGA 1110 Query 1168 GATCTGA 1174 ||||||| Sbjct 1111 GATCTGA 1117 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60677760285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5