BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72490.1
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476382 jgi|Araly1|476382|fgenesh2_kg.2__1512__AT1G72490.1 1450 0.0
Ahg471945 jgi|Araly1|471945|fgenesh2_kg.1__1899__AT1G17400.1 315 9e-85
> Ahg476382 jgi|Araly1|476382|fgenesh2_kg.2__1512__AT1G72490.1
Length=1316
Score = 1450 bits (785), Expect = 0.0
Identities = 1036/1153 (90%), Gaps = 33/1153 (3%)
Strand=Plus/Plus
Query 291 ttcttcCGGGTCACTAAGACATGAAGTTTTTCGGGTGGATGCAGAACAAGCTACATGGGA 350
|||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 143 TTCTTCTTGGTCATTAAGACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTACATGGGA 202
Query 351 AACAAGAGA-T--TACTCATAGACCAAGCATATCCTCTGCTTCTTCTCATCATCCGAGAG 407
|||||| || | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 203 AACAAGGGATTAATACTCATAGACCAAGCATATCCTCTGTTTCTTCTCATCAACCGAGAG 262
Query 408 AGGAGTTTAACGATTGGCCTCACGGATTACTCGCGATTGGTACATTCGGTAACAAAAAGC 467
||||||||| |||||||||||| ||| ||||||||||||| || |||||||||||| ||
Sbjct 263 AGGAGTTTAGCGATTGGCCTCATGGACTACTCGCGATTGGAACGTTCGGTAACAAAGCGC 322
Query 468 AGACACCACAAACACTTGATCAAGAAGTGATTCAAGAAGAGACAGTGTCTAACTTACACG 527
||||| |||||| | |||||||||||| ||||||||||||||| |||||| | | | |
Sbjct 323 AGACATCACAAAAAGTTGATCAAGAAGAGATTCAAGAAGAGACGGTGTCT-A---A-A-G 376
Query 528 TGGAAGGTCGTCAAGCACAAGATACAGATCAAGAGCTTTCTTCCTCCGATGATCTAGAAG 587
||||| | ||||||||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 377 TGGAA-G--GTCAAGCACAAGATAGAGATCAAGAACTTTCTTCAACCGATGATCTAGAAG 433
Query 588 AAGATTTCACTCCCGAAGAAGTTGGGAAACTACAGAAGGAGCTGACGAAACTCTTGACGA 647
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 434 AAGATTTCACTCCAGAGGAAGTTGGGAAACTGCAGAAGGAGCTGACGAAACTCTTGACGA 493
Query 648 GAAGGAGTAAGAAAAGGAAGTCTGATGTGAATCGAGAATTAGCGAATCTTCCTTTGGATA 707
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 494 GAAGGAGCAAGAAGAGGAAGTCTGATGTGAATCGAGAATTGGCGAATCTTCCTTTGGATA 553
Query 708 GATTCTTGAATTGTCCTTCGAGTCTTGAGGTCGATAGAAGAATCAGTAACGCGCTTTGTG 767
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 554 GATTCTTGAATTGTCCTTCGAGTCTTGAGGTCGATAGAAGAATCAGCAACGCGCTTTGTG 613
Query 768 ATGAGAAGGAGGAAGACATTGAGCGTACAATCAGTGTTATCCTAGGGAGATGCAAAGCTA 827
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct 614 ATGAGAAGGAAGAAGACATTGAGCGTACAATCAGTGTTATCTTAGGGAGATGCAAGGCGA 673
Query 828 TTTCTACAGAGAGCAAGAACAAGACGAAGAAGAATAAAAGAGATTTGAGCAAAACCTCTG 887
|||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 674 TTTCGACAGAGAGCAAGAACAAGACGAAGAAGAGTAAGAGAGACTTGAGCAAAACCTCTG 733
Query 888 TTTCTCATCTTCTCAAGAAGATGTTTGTCTGTACAGAAGGTTTTTCTCCCGTTCCTCGCC 947
||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |||
Sbjct 734 TTTCTCATCTTCTCAAGAAGATGTTTGTCTGTACAGAGGGTTTCTCTCCAGTTCCTAGCC 793
Query 948 CTATCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTGAGAATGATGCTAC 1007
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 CTAGCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTGAGAATGATGCTAC 853
Query 1008 ACAAGAAAGTTAACACTCAAGCTTCATCAAAGCAAACATCGACaaaaaaaTACTTGCAAG 1067
|||||||| | ||||||||| |||| | |||||||||||| || ||||||||||||||||
Sbjct 854 ACAAGAAAATAAACACTCAAACTTCTTTAAAGCAAACATCAACGAAAAAATACTTGCAAG 913
Query 1068 ACAAGCAACAGCTCTCGTTGAAGAACGAGGAAGAAGAAGGACGAAGCAGTAACGATGGGG 1127
|||||||||| || || |||||||| ||||||||||||| | |||| |||| ||||||||
Sbjct 914 ACAAGCAACAACTTTCTTTGAAGAATGAGGAAGAAGAAGAAAGAAGTAGTAGCGATGGGG 973
Query 1128 GGAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGAGATCTGAATATATGGTCCAC 1187
| ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 974 GTAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGAGATCTGAATATTTGATTCAC 1033
Query 1188 TTTTCCTTTTTCATGTTCTTTCAAGAAAATACAGATAGAGAATCTTCAC--A-AT--ATC 1242
| |||| ||||||||||||||||||||| ||||||||||||||||||| | || |||
Sbjct 1034 TGTTCCCTTTTCATGTTCTTTCAAGAAAGTACAGATAGAGAATCTTCAATGATATCGATC 1093
Query 1243 AAGACAATTTCTTTTTCTCT-C-TGATGAAAAGTTTTTGGGTCTCTCTATCTATCTGCAG 1300
||||||| || | | | |||||||||||||||||||| ||||||||||
Sbjct 1094 AAGACAAAGAAAATT-CAAAACATTCC-AAAAGTTTTTGGGTCTCTCT--CTATCTGCAG 1149
Query 1301 AGAGCCCATGAGTCCCtttttttGCATGGTTGGGTCCATAAAACCAAAACATGTTTTGGG 1360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1150 AGAGCCCATGAGTCCCTTTTTTTGCATGGTTGGGTCCATAAAACCTAAACATGTTTTGGG 1209
Query 1361 AACTAAA-CATCAGACATCGTACATGAGatatgtatatgcatacatacatgtgtgtatat 1419
||||||| ||||||| | ||||||||||||| | ||||| || | ||||||||||
Sbjct 1210 AACTAAAACATCAGATA--GTACATGAGATATTTGTATGCGTA--T----GTGTGTATAT 1261
Query 1420 g-taaagatagat 1431
|||||||||||
Sbjct 1262 TATAAAGATAGAT 1274
Score = 110 bits (59), Expect = 4e-23
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 97 TCTTTTTCGAAGAAGTGAATCTGGACGAAGAACTAAGGCCGCCAATTTTGGAATTTGAAC 156
||| ||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||
Sbjct 1 TCTCTTTCGAAGAAGTGAATCTGGACGAAGAACTAAGGCCGTCA-TTTCGGAACTTGAAC 59
Query 157 CATCAAATTCATCAA 171
|||||||||||||||
Sbjct 60 CATCAAATTCATCAA 74
Score = 71.3 bits (38), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1448 atgtaGTTTTGTATTTTCAGGTGGATAACCTTTGGTTTCTAGAA 1491
|||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1273 ATGTAGTTGTGTATTTTCAGGTGGATAACCTTTGGTTTATAGAA 1316
> Ahg471945 jgi|Araly1|471945|fgenesh2_kg.1__1899__AT1G17400.1
Length=1427
Score = 315 bits (170), Expect = 9e-85
Identities = 513/667 (77%), Gaps = 70/667 (10%)
Strand=Plus/Plus
Query 558 AAGAGCTTTCTTCCTCCGAT-GATCTAGAAGAAGATTTCACTCCCGAAGAAGTTGGGAAA 616
|||||| |||||| || | | ||||| |||||||||||||| || || ||| |||||
Sbjct 471 AAGAGCCTTCTTCTTCTG-TCGATCT---TGAAGATTTCACTCCTGAGGAGGTT-GGAAA 525
Query 617 -CTACAGAAGGAGCTGACGAAACTCTTGACGAGAAGGAGTAAGAAAAGGAAGTCTGATGT 675
| ||||||||| ||| ||| |||||| | ||| | |||||||||||||||||||||
Sbjct 526 GTTGCAGAAGGAGTTGATGAAGCTCTTGTC---AAGAACTAAGAAAAGGAAGTCTGATGT 582
Query 676 GAATCGAGA-ATTA-G-CGAATCTTCCTTTGGATAGATTCTTGAATTGTCCTTCGAGTCT 732
|||| |||| | | | |||||||||||||||||||||||||| ||||| |||||| |
Sbjct 583 GAATAGAGAGCTCATGAAAAATCTTCCTTTGGATAGATTCTTGAACTGTCCATCGAGT-T 641
Query 733 T-GAGGTCGATAGAAGAATCAG---T-AAC---GCGCT-TTGT-GA------T---GAG- 772
| ||||||||||| ||||||| | || ||||| |||| || | |||
Sbjct 642 TAGAGGTCGATAGGCGAATCAGCAATGCACTTAGCGCTGTTGTGGATTCGTCTGAGGAGA 701
Query 773 --AAGGAGGAAGACATTGAGCGTACAATCAGTGTTATCCTAGGGAGATGCAAAGCTATTT 830
||||||||||| || ||||| || || || ||||| ||||| |||||||||| || |
Sbjct 702 ATAAGGAGGAAGATATGGAGCGAACGATTAGCGTTATTCTAGGTAGATGCAAAGAGATAT 761
Query 831 CTACAGAGAGCAAGAACAAGACGAAGAAGAATAAAAGAGATTTGAGCAAAACCTCTGTTT 890
| | | |||| || |||| ||| ||||| || |||||| | ||||| |||||||| |
Sbjct 762 C-A-ATAGAG--AG--TAAGAAGAATAAGAAGAAGAGAGATATAAGCAAGACCTCTGTCT 815
Query 891 C-TCATCTTCTCAAGAAGATGTTT-GTCTGTACAGAA-GGTTTTTCTCCCGTTCCTCGCC 947
| | ||||| | |||||||| ||| ||||| || || || ||||| | | || |||
Sbjct 816 CAT-ATCTTTTGAAGAAGAT-TTTCGTCTGCGCA-AATGGGATTTCTACAGCCCCAAGCC 872
Query 948 CTATCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTG-AGAATGATGCTA 1006
||| | ||||||||||| |||||||| ||||||||||||||||| || || ||||||||
Sbjct 873 CTAGCCTGAGAGACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAG-ATGATGCTC 931
Query 1007 CACAAGAAAG-TTAACACTCAAGCTTCATC-AAAGCAA-A-CATCGACaa-aaa-a-aTA 1059
|| ||| ||| |||| ||||||| || || ||| ||| | ||||||||| ||| | |||
Sbjct 932 CATAAG-AAGATTAATGCTCAAGCCTCCTCGAAACCAACATCATCGACAACAAAGAGATA 990
Query 1060 CTTGCAAGACAAGCAACAGCTCTCGTTGAAGA---ACGAGGAAGAAG--A--AG-G-ACG 1110
|||| |||||||| |||||||||| ||||||| | || ||||||| | || | | |
Sbjct 991 CTTGGAAGACAAGAAACAGCTCTCATTGAAGAGTGAAGAAGAAGAAGAAACTAGCGAAAG 1050
Query 1111 AAGCAGTA---ACGATGGGGGGAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGA 1167
||| |||| ||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 1051 AAGAAGTAGTGGCGACGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTTGA 1110
Query 1168 GATCTGA 1174
|||||||
Sbjct 1111 GATCTGA 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5