BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72500.1
Length=2271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476383 jgi|Araly1|476383|fgenesh2_kg.2__1513__AT1G72500.1 3642 0.0
> Ahg476383 jgi|Araly1|476383|fgenesh2_kg.2__1513__AT1G72500.1
Length=2274
Score = 3642 bits (1972), Expect = 0.0
Identities = 2169/2267 (96%), Gaps = 2/2267 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGAAGAGTTCGCACTTCGAGTAGAGCAAGGTCTTCAGCTCGCAAGACGTATATAC 60
||||| |||||||| |||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 1 ATGTCGGAAGAGTTTGCACTTCGAGTAGAGCAAGGTCTTAAGCTCGCAAGAAGAATATAC 60
Query 61 TACGGCAAAGGCATCGCTCCTCCTGTAGTACCAGATCCTCCTTCTTCACCGGAAAACTTT 120
||||||||||||||| |||||||||||||||| ||| ||||||| || |||||||| |||
Sbjct 61 TACGGCAAAGGCATCACTCCTCCTGTAGTACCGGATTCTCCTTCATCGCCGGAAAATTTT 120
Query 121 CTTCCGACGGCGATTACGGCTTACGCTTCAATAACAGATCCGGTGGCTGTTGATAACCCC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTTCCGACGGCGATTACGGCTTACGCTTCAATCACAGATCCGGTGGCTGTTGATAACCCC 180
Query 181 GACGTTCCTAGCTACCAGCCGTACGTTCACGCACGATGCGATCCTTCAGCTCTCGTGCCG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GACGTTCCTAGCTACCAGCCGTACGTTCACGCACGATGCGATCCTTCAGCGCTCGTGCCG 240
Query 241 CTTCAGATGCTCGGAATTGAGATGAATA-TAGATTGTTGGCTCGACACGGCGTTTGTCAC 299
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 241 CTTCAGATGCTCGGAATTGAGATG-AGAGTAGATTGTTGGCTCGACACGGCGTTTGTCAC 299
Query 300 CGTCACCGGACGGTGGAGAGTTCACTGTGTTAGGCCTAGCAAACGCTTTGACTGCTGTGT 359
|||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||
Sbjct 300 CGTCACCGGACGGTGGCGAGTTCACTGCGTTATGCCTAGCAAACGCTTTGACTGCTGTGT 359
Query 360 CGGTGTTCCTATGGGTGAGAAGGGCTCATTTCTAGGTGCTGAGATTGATGTTTTGAACAA 419
||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 360 CGGTGTTCCTATGGGTGAGAAGGGCACACTTCTAGGTGCTGAGATTGATGTTTTGAGCAA 419
Query 420 TGAGAAATCTTACCAGACCAAACTAGTTACAGAGGATGAAACATCTGACTTTGATAACGT 479
||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 420 TGAGAAATCTTACAAGACCAAACTAGTTACAGAGGATGAAACTTCTGACTTTGAAAACGT 479
Query 480 TCATAAAGACAAAGATTCACGTTTCTTTAAGTCTCATATCTATACTTTCAAGATCCCACA 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TCATAAAGACAAAGATTCACGTTTCTTCAAGTCTCATATCTATACTTTCAAGATCCCACA 539
Query 540 TGTTGCTGGAGGATCAATCTTTTCGGTTAATGTGACTTGGTCTCAGAAATTGATTTACAA 599
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 TGTTGTTGGAGGATCAATCTTTTCGGTTAATGTGAATTGGTCTCAGAAATTGATTTACAG 599
Query 600 AGACGGCAAGTTTCATCTCAATGTGCCTTTTAGATTCCCTTCTTATGTGAATCCTATAGG 659
||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 600 AGATGGCAAGTTTCATCTCAATGTGCCTTTTAGATTCCCTGCTTATGTGAATCCTGTAGG 659
Query 660 CAAGGAAATTATTAAACGAGAAAAGATTGTGTTAAACATGAATTCTTGTGTTAGTGGCGG 719
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAAGGAGATTACTAAACGAGAAAAGATTGTGTTAAACATGAATTCTTGTGTTAGTGGCGG 719
Query 720 CGAAATAGCTTCTAGTTTTACAAGCCATCCATTAAAGATTATTCACCGTGTAGCGGGTGA 779
|||| |||||||||||| |||||||||||| |||||| | |||||||||| ||||||| |
Sbjct 720 CGAAGTAGCTTCTAGTTATACAAGCCATCCTTTAAAGGTGATTCACCGTGAAGCGGGTAA 779
Query 780 ATTAAGTTGTGAGTATGAAGCTGAAGTACCATCTTGGTCAAGGGTTGATTTTGGTGTTTC 839
|||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 780 ATTAAGCTGCGAGTATGAAGCTGAAGTTCCATCTTGGTCAAGAGTTGATTTTGGTGTTTC 839
Query 840 ATTCACTGTTTCCTCTGGTGATCTGTGTGGTAATGTATTGGTTAAGTCTCCATCTCCATG 899
||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 840 ATTCAATGTTTCCTCTGGTGATCTGACTGGTAATGTTTTGGTTAAGTCTCCATCTCCATG 899
Query 900 GGATTCAGATGACAGAGGAATATTCTGTTTGTACCTTTTCCCTGGAACCACCAAGCATAC 959
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGATTCAGATGACAGAGGGATATTCTGTTTGTACCTTTTCCCTGGAACCACCAAGCATAA 959
Query 960 GAAGCTTTTCAAACGAAGAGTTGTGTTTGTGATTGACATAAGTGCAAGCATGAAATGGAA 1019
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAAGCTTTTCAAAAGAAGAGTTGTGTTTGTGATTGACATAAGTGCAAGCATGAAATGGAA 1019
Query 1020 GCCGCTCGAGGATGTGAAGAAAGCTTTGTTAGAGTGTTTGGCTAAACTACAAGCTGAAGA 1079
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1020 GCCGCTTGAGGATGTGAAGAAAGCTTTGTTAGAGTGTTTGGCTAAGCTACAAGCTGAAGA 1079
Query 1080 TGTTTTCAACATAATCGCTTTCAATGACGAAATTCTAGAATTCTCAACTTCAATGGAGTT 1139
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 TGTTTTCAACATAATCGCTTTCAATGACGAAATTCTTGAATTCTCAACTTCAATGGAGTT 1139
Query 1140 TGCAACAGATGAAACTATATCCGCTGTGACTGAATGGCTTGATAGTAATTTAATTGCAAA 1199
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 TGCAACAGATGAAACTATCTCCGCTGTGACTGAATGGCTTGATACTAATTTAATTGCAAA 1199
Query 1200 TGGTGGAACAAACATGTTACTTCCCCTCAAACAGGCAATGAAACTACTTGAAGGAAGCAA 1259
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1200 TGGTGGAACAAACATGTTACTTCCCCTCAAACAGGCAATGAAGCTGCTTGAAGGAAGCAA 1259
Query 1260 TATTGGAGTTCCTCTTGTATACCTTGTCACTGATGGATCTGTTGAAAACGAGAGAGAGAT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TATTGGAGTTCCTCTTGTATACCTTGTCACTGATGGATCTGTTGAAAACGAGAGAGAGAT 1319
Query 1320 ATGTCATGCTATGAAAGAATCTTGTAGCAGAAACGGAAAATCGATTTCTCCTAGGATATC 1379
|||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1320 ATGTAATGCTATGAAAGAATCTTGTAGCAGAAACGGGAAATCGATTTCTCCTCGGATATC 1379
Query 1380 TACCTTTGGCATTGGTTCGTTTTGCAACCATTACTTCTTGCAAATGCTAGCTCGGATAGG 1439
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 TACCTTTGGCATTGGTTCTTTTTGCAACCATTACTTCTTGCAAATGCTAGCGCGGATAGG 1439
Query 1440 GAATGGTTACTATGACGGCACAAACAACACAGATTCATTCGAGCATCAGATGAGTAGACT 1499
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1440 GAATGGTTACTATGATGGCACAAACAACACAGATTCATTCGAGCATCAGATGAGTAGATT 1499
Query 1500 ATTTGAGATAGCTTCTTCAACGATCGTAGCCAATACTACTTTTGATGCTCTCAAACTTCT 1559
|||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1500 ATTTGATATAGCTTCTTCAACGATCGTAGCCAATACCACTTTCGACGCTCTCAAACTTCT 1559
Query 1560 CCGATCAGTTGAGCTGTTTCCTTGTCAGGTTCCAGACATTACTCTCGGTGATCCGTTGAT 1619
||||||||| |||||||||||||||||| ||||||| ||||| ||| ||||||| |||||
Sbjct 1560 CCGATCAGTCGAGCTGTTTCCTTGTCAGATTCCAGATATTACGCTCTGTGATCCTTTGAT 1619
Query 1620 CTTGTCTGGAAGATACAAAGGAGAGTTCCCAGATGAAGTTGAACTTAGAGGCACACTGGC 1679
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1620 CTTGTCTGGAAGATACAAAGGAGAGTTCCCAGATGAAGTTGAACTCAGAGGCACACTGGC 1679
Query 1680 TGATATGAGCTGTTTCACAATAGAGTTAACAGTGCAGAAGGCTAAAGACATTCCTCTAGA 1739
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1680 TGATATGAGCTGTTTCACAATAGAGCTAACAGTGCAGAAGGCTAAAGACATTCCTCTAGA 1739
Query 1740 CAAGGTTCTTGCGAGGAGACAAATCAATGAACTCACTGCTCGAGCTTGGTTTGAAGACAA 1799
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1740 CAAGGTTCTTGCGAGGAGACAAATCAATGAACTCACTGCTCGAGCTTGGTTCGAAGACAA 1799
Query 1800 GAAAGAGCTGCAAGAAAAGGTCATGAGATTGAGTATACAAACAGGGTTTCCTAGCGAATA 1859
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1800 GAAAGAGCTGCAAGAAAAGGTCATGAGATTGAGTATACAAACAGGGTTTCCAAGCGAATA 1859
Query 1860 CACGCAAATGGTATTATCAGTCAAACACGACGAGGAAGAGAAGACGATGGCAAGACCAGT 1919
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1860 CACGCAAATGGTTTTATCACTCAAACACGACGAGGAAGAGAAGACGATGGCAAGACCTGT 1919
Query 1920 TTCAATCAAAGAGATTCTAAGGAACCCACCATACCAAATCCACAAGCAGATGCAGAGGAG 1979
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1920 TTCAATCAAAGAGATTCTAAGGAACCCACCGTACCAAATCCACAAGCAGATGCAGAGGAG 1979
Query 1980 CAACAGCATGAGAAGGAGTTTGCTTGGGAAACAAGGGTATGGGTTCGGGAACGTTGCAGC 2039
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1980 CAACAGTGTGAGAACGAGTTTGCTTGGGAAACAAGGGTATGGGTTCGGGAACGTTACCGC 2039
Query 2040 TACTTTAAAGAACGTGCCACCGTGGATGGAGGAGCCGAAGGAGGTGGAAGGAACTGAACT 2099
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2040 TACGTTAAAGAACGTGCCACCGTGGATGGAGGAGCCGAAGGAGACGGAAGGAACTGAACT 2099
Query 2100 TCTGATAAGAGCGGCGTCAGGAGTGGTTGACCGCGTTTGCTGTATGTGTTGCTTGCAGTG 2159
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2100 TCTGATAAGAGCGGCATCAGGAGTGGTGGACCGCGTTTGCTGTATGTGTTGCTTGCAGTG 2159
Query 2160 TATGTCAAGGGTGAGTGATCAGTGCACCATTGTCTTCTCTCAGCTCTGTGCAGCATTGGC 2219
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2160 CATGTCAAGGGTGAGTGATCAGTGCACCATTGTCTTCTCTCAGCTTTGTGCAGCTTTGGC 2219
Query 2220 TTGTTTCCAGTGTATTGGTTGCTGTTTCGAAGTCTGTGGCTGTCTTG 2266
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2220 TTGTTTCCAGTGTATTGGTTGCTGTTTCGAAGTTTGTGGCTGTCTTG 2266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85512600025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5