BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72510.1
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476384 jgi|Araly1|476384|fgenesh2_kg.2__1514__AT1G72510.1 1341 0.0
> Ahg476384 jgi|Araly1|476384|fgenesh2_kg.2__1514__AT1G72510.1
Length=1252
Score = 1341 bits (726), Expect = 0.0
Identities = 1143/1323 (86%), Gaps = 114/1323 (9%)
Strand=Plus/Plus
Query 63 GAAACGAGAGATTCGAGTGATGTTTTATGAACTACTACTAG-TGtttttttCCGTGAAGT 121
||||||||||||||||||||| ||||||||||||||| | | | ||||||||||||||||
Sbjct 26 GAAACGAGAGATTCGAGTGAT-TTTTATGAACTACTAGT-GTTTTTTTTTTCCGTGAAGT 83
Query 122 -AAAGAGAAACGGTAACTTTTTCTATTTGTTTTCAAGAAAAGCCAAAGaaaaaaaGaatt 180
||||||||| |||||| ||||| ||||| |||||||||||||||||| | ||
Sbjct 84 AAAAGAGAAAGGGTAAC-TTTTCAATTTGATTTCAAGAAAAGCCAAAG------A-AA-- 133
Query 181 tttaatatactctgttttttgcaatgattttgttttgtgaaatttttCTCGGAGAAGAAA 240
|| | | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 134 ---AA-A-A-------TTTTGCAATGGTTTTGTTTTGTGAAATTTTTCTCGGAGAAGAAA 181
Query 241 GTAATTTAGAAGACGGAGAGTGGCAAAACGA-A-ATATaaaaaaa-aaa--GTTTTC-AA 294
||||||||||||||||||||||||||||||| | ||| ||||||| ||| || ||| ||
Sbjct 182 GTAATTTAGAAGACGGAGAGTGGCAAAACGATAGATAAAAAAAAACAAATAGTATTCCAA 241
Query 295 TTTCTTTTAAGaaaaaaaaaGCTTTTTCC-CTTCTTA-AAACCCTTCCTCTGTTTCAGAA 352
||||||||||||||||||||| ||||| | ||| ||| ||||||||||||||||||||||
Sbjct 242 TTTCTTTTAAGAAAAAAAAAGTTTTTTTCTCTTTTTAGAAACCCTTCCTCTGTTTCAGAA 301
Query 353 ACAGAGACATAAGAAGAAAATAGATCACAAGCTAATTGCGttctcttctc-ttcttcttc 411
||||||||| || ||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct 302 ACAGAGACAAAACAAGAAGATAGATCACAAGCTAATTGCGTTCTCTTCTCCTTCTACTGG 361
Query 412 tACTGGGTTTTAAAATCAAGAAACCATGTCTGCGAGTGTTCTAAGTGATCCAACAATGCT 471
|| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 362 TAAT---TTTTAAA-TCAAGAAACCATGTCTGCGAGTGTACTAAGTGATCCAACAATGCT 417
Query 472 AATTTCAACACCGGAGGTAATACTCGTCTCTCCGGTATCGGTTACTCAAATCTCCGGAGA 531
|||||||||||| ||||||||| ||||||||||| ||| || || |||||||| ||
Sbjct 418 AATTTCAACACCAGAGGTAATAATCGTCTCTCCGACGCCGGCAACACAGATCTCCGGCGA 477
Query 532 TGAGCCAGATTCGGTGACGTGTGATTGTTGCGGATTAACCGAGGAGTGTACCCAATCGTA 591
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 478 TGAGCCAGATTCGGTGACGTGTGACTGTTGCGGATTAACCGAGGAGTGTACACAATCGTA 537
Query 592 CATAGAGATGGTCAGAGAGCGTTACATGGGGAAATGGATCTGTGGACTTTGTTCTGAAGC 651
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CATAGAGATGATCAGAGAGCGTTACATGGGGAAATGGATCTGTGGACTTTGTTCTGAAGC 597
Query 652 TGTGAAGTATGAAGTCATGAGAACGAAAAGATTGTTAACGACAGAGGAAGCTATGGCCAG 711
|||||||||||||||||| ||||| ||| ||||| |||| ||||||||||| ||||| ||
Sbjct 598 TGTGAAGTATGAAGTCATAAGAACTAAACGATTGCTAACTACAGAGGAAGCCATGGCAAG 657
Query 712 ACACATGAACATGTGTAATAAGTTCAAATCCTCAAGCCCACCACCGAATCCGACAGGACA 771
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 658 ACACATGAACATGTGTAATAAGTTCAAATCCTCAAGCCCTCCACCGAATCCGACCGGACA 717
Query 772 TTTGATCTCTGCCATGAGACAGATCTTGAGAAAAAGCTTAGATTCACCAAGAATGCTTAG 831
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 TTTGATCTCTGCGATGAGACAGATCTTGAGAAGAAGCTTAGATTCACCAAGAATGCTTAG 777
Query 832 ATCTATGCCTAATAGTCCATCTAAAGACGACCAAGATCATCATCATGATTGTGTTTCTAA 891
|||||||||||||||||| |||||||||||||||||| | | | || || ||||
Sbjct 778 ATCTATGCCTAATAGTCCTTCTAAAGACGACCAAGAT--T------G-T-GT-TT-CTAA 825
Query 892 TGTTTTGTCTAGGTCTGATAGCTGTTTCGCTAGTTTGACTTGAAAAAAGCTCATCGTTGA 951
||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |
Sbjct 826 TGTTTTGTCTAGGTCCGATAGCTGTTTCGCTAGTTTGACTT-AAAA--GCTCAT-----A 877
Query 952 AAAAATTGTTTTAAACCGTCGGTTTAGGGACCCACTTGGATCAAATCCGGTTTTCTGATT 1011
|| ||||||||||||| |||||| ||||| ||||||||||||| ||||
Sbjct 878 AA-------------CCGTCGGTTTAGG-ACCCACCTGGATTAAATCCGGTTTTCAGATT 923
Query 1012 TGAAATTTTCGTCGGTAAATCAAAAATTGGTTTCTGTATGTGTTTTTGCCGGATTTGTTG 1071
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 924 TGAAAATTTCGTCGGTAAACCAAAAATTGGTCTCTGTATGTGTTTTTGCCGGATTTGT-- 981
Query 1072 TTGTACTTTTGGAAAATTTTGGGCTAAAAGAATAATTTGGTGCTCTGTTTCTGTCTTTTA 1131
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 982 ----ACTTGTGGAAAATTTTGGGCTAAAAGAATAATTTGGTGCTCTGTTTCTTTCTTTTA 1037
Query 1132 TTCTTTCTCCAATTGCTAGCTAA-TAT-TC-GGAATTCTG--TTGCTGTGAGCTTAGTTA 1186
|||||||||||||||||| ||| | | | || ||| | ||| |||| ||||||||
Sbjct 1038 TTCTTTCTCCAATTGCTAA-TAACTTTATAAGGG-TTCGGAATTG-TGTG--CTTAGTTA 1092
Query 1187 AACAAGAACAAAATGAAATGAAAATATGTTTATACTATTCGATTATAATTAGATAATTAA 1246
|||||||||||||| | | | | |||||||||||||| |||||
Sbjct 1093 AACAAGAACAAAAT-A--T-----T---------C-----GATTATAATTAGATGATTAA 1130
Query 1247 GAAGG-AGATTCTTTAGAAATTTATCATATT-GAAAAGACATGTATGATCAAAAACCATG 1304
|||| |||||||||||| ||||||||| || |||||||||||||||| ||||||||||
Sbjct 1131 AAAGGGAGATTCTTTAGAGATTTATCAT-TTAGAAAAGACATGTATGAACAAAAACCATC 1189
Query 1305 GAAGGTAGGGTCATGCTTATCTCTGTGATGATTCTCTATCACAAAATAGAAATGAAAAAG 1364
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1190 GAAGGTAGGGCCATGCTTATCTCTCTGATGATTCTCTATCACAAAATAGAAATGAAAAAG 1249
Query 1365 GTG 1367
|||
Sbjct 1250 GTG 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51694675452
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5