BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72520.1
Length=3042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476385 jgi|Araly1|476385|fgenesh2_kg.2__1515__AT1G72520.1 4390 0.0
Ahg471947 jgi|Araly1|471947|fgenesh2_kg.1__1901__AT1G17420.1 2060 0.0
> Ahg476385 jgi|Araly1|476385|fgenesh2_kg.2__1515__AT1G72520.1
Length=2896
Score = 4390 bits (2377), Expect = 0.0
Identities = 2725/2890 (94%), Gaps = 36/2890 (1%)
Strand=Plus/Plus
Query 94 AAAATGGCTTTAGCTAATGAGATAATGGGTTCTCGTCTAATCTTCGAGAGATCATCATCA 153
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 5 AAAATGGCTTTAGCTAATGAGATAATGGGTTCTCGTCTGATCTTTGAGAGATCATCATCA 64
Query 154 CTTGCGTCTCCGTTTCATTCGCGTTTCTCCATCAAGAAGAAGACACAGAGAACACAGTTC 213
||||||||||||||||| ||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 65 CTTGCGTCTCCGTTTCAATCGCGTTTCTCCACCAAGAAGAGGACACAGAGAACGCAGTTC 124
Query 214 TCCATCAACCCTTTTGATCCGAGACCTATGAGAGCCGTTAACTCAAGCGGCGTTGTAGCG 273
|||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||
Sbjct 125 TCCATCAACCCTTTTGATCCGAAACCTATAAGAGCTGTTAACTCCAGCGGCGTTGTAGCA 184
Query 274 GCCATCAGCGAGGATTTGGTTAAAACGCTGCGTATTAGCACTGTCGGTAGAAAACAAGAG 333
||||||||| || || ||||||||||||||||||| |||||||||||||
Sbjct 185 GCCATCAGC---GA---GG---AAACGCTGCGTATTAGCACCGTCGGTAGAAAAC----- 230
Query 334 AAGGAGGAAGAAGAGGAGAAGTCGGTGAAGTTTAAGGTGAGAGCAGTTGCGACGGTGAGG 393
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 231 -AGGAGGAAGAGGAGGAGAAGTCGGTGAAGTTTAAGGTGAGAGCGGTTGCGACGGTGAGG 289
Query 394 AACAAAAACAAAGAGGATTTTAAAGAAACTTTGGTTAAGCATTTGGATGCTTTTACTGAT 453
||||| ||||| || ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 290 AACAAGAACAAGGAAGATTTTAAAGATACTCTGGTTAAGCATTTGGATGCTTTTACTGAT 349
Query 454 AAAATTGGTAGAAACGTTGTCTTGGAGCTTATGAGTACCCAAGTTGATCCAAAAACGAAT 513
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 350 AAAATCGGTAGAAACGTCGTCTTGGAGCTTATTAGTACCCAAGTTGATCCAAAAACGAAT 409
Query 514 GAGCCAAAGAAGAGTAAAGCGGCAGTTTTGAAAGATTGGTCAAAGAAATC-AAATTCAAA 572
||||||||||||||||||||||| || |||||||| |||||||||||||| ||| | |||
Sbjct 410 GAGCCAAAGAAGAGTAAAGCGGCGGTATTGAAAGACTGGTCAAAGAAATCGAAAAT-AAA 468
Query 573 GGCGGAAAGAGTCCATTACACGGCCGAGTTCACGGTGGATTCAGCCTTTGGTTCTCCGGG 632
|||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 469 GGCGGAGAGAGTTCATTACACGGCGGAGTTCACGGTGGATTCCGCCTTTGGTTCGCCGGG 528
Query 633 AGCCATCACCGTGACCAACAAACACCAAAAAGAGTTCTTTCTTGAGAGCATCACCATCGA 692
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 529 AGCCATCACGGTAACCAACAAACACCAAAAAGAGTTCTTCCTTGAGAGCATCACCATTGA 588
Query 693 GGGTTTCGCATGTGGCCCTGTTCACTTCCCCTGCAACTCTTGGGTCCAATCTCAAAAAGA 752
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 589 GGGTTTCGCATGTGGCCCTGTTCACTTCCCCTGCAACTCTTGGGTCCAATCCCAAAAAGA 648
Query 753 CCATCCATCCAAACGAATTCTCTTCACTAATCAGCCTTACTTGCCGAGCGAGACACCGTC 812
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CCATCCATCCAAACGAATTTTCTTCACTAATCAGCCTTACTTGCCGAGCGAGACACCGTC 708
Query 813 CGGTCTAAGAACATTAAGGGAGAAAGAATTGGAGAATCTAAGAGGAAATGGTAAAGGAGA 872
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 709 CGGTCTAAGAACATTAAGGGAGAAAGAATTGGAGAATCTAAGAGGAAATGGGAAAGGAGA 768
Query 873 AAGAAAATTATCAGACAGAATCTACGATTATGATGTGTACAACGACATAGGAAATCCGGA 932
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 769 AAGAAAATTATCAGACAGAATCTACGATTTTGATGTCTACAACGACATAGGAAATCCGGA 828
Query 933 CATATCACGTG-AACTAGCCCGTCCCACACTTGGTGG-CCGTGAATTTCCTTACCCTAGA 990
||||||||| | ||||||||||||||||| ||||||| || | |||||||||||||||||
Sbjct 829 CATATCACG-GAAACTAGCCCGTCCCACATTTGGTGGTCC-TAAATTTCCTTACCCTAGA 886
Query 991 CGCTGTCGAACCGGCCGGTCTTCAACCGACACCGATATGATGTCTGAGAGGCGGGTGGAG 1050
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 887 CGCTGTCGAACCGGCCGGTCTTCCACAGACACCGATATGATGTCTGAGAGGCGGGTGGAG 946
Query 1051 AAACCATTACCGATGTATGTGCCAAGAGATGAGCAGTTCGAGGAGTCTAAGCAGAACACT 1110
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 947 AAACCATTACCGATGTATGTGCCAAAAGATGAGCAGTTCGAGGAGTCTAAGCAGAACACT 1006
Query 1111 TTTGCTGCATGTAGACTTAAGGCGGTTTTACATAACCTTATACCTTCACTAAAAGCTAGC 1170
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TTTGCTGCATGTAGGCTTAAGGCGGTTTTACATAACCTTATACCTTCACTAAAAGCTAGC 1066
Query 1171 ATTTTGGCTGAGGACTTCGCTAACTTTGGTGAGATCGATAGTCTTTACAAAGAAGGCTTG 1230
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1067 ATTTTGGCTGAGGACTTCGCTAACTTCGGCGAGATCGATAGTCTTTACAAAGAAGGCTTG 1126
Query 1231 CTTCTCAAGTTAGGGTTTCAAGATGATATGTTCAAGAAATTCCCTTTACCGAAGATCGTC 1290
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1127 CTTCTCAAGTTAGGGTTTCAAGATGATATGTTCAAGAAGTTCCCTTTGCCTAAGATCGTC 1186
Query 1291 ACTACCCTCCAAAAATCAAGCGAGGGCTTGCTTAGATACGACACTCCTAAAATAGTTTCA 1350
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1187 ACTACCCTCCAAAAATCAAGCGAAGGCTTGCTTAGATACGACACTCCAAAAATAGTTTCA 1246
Query 1351 AAGGATAAATATGCATGGCTTCGAGATGACGAGTTCGCACGCCAAGCCATAGCTGGGATC 1410
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1247 AAGGATAAATACGCATGGCTTAGAGATGACGAGTTCGCACGCCAAGCCATAGCTGGGATC 1306
Query 1411 AACCCGGTCAACATAGAACGAGTCACGTCTTATCCACCGGTCAGCAATCTTGACCCTGAA 1470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1307 AACCCGGTCAACATAGAACGAGTCACGTCTTATCCACCGGTCAGCAATCTTGACCCCGAG 1366
Query 1471 ATCTACGGACCAGGTCTTCACTCCGCTCTCACGGAAGACCACATCATCGGTCAACTTGAT 1530
|||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 1367 ATCTACGGTCCAGGTCTTCACTCCGCTCTCACAGAAGACCACATCATCGGTTACCTTGAC 1426
Query 1531 GGCTTAACCGTACAACAAGCGTTAGAGACGAACCGTTTGTTTATGGTGGACTACCATGAC 1590
|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1427 GGCTTATCCGTACAACAAGCGTTAGAGACAAACCGATTGTTTATGGTGGACTACCATGAC 1486
Query 1591 ATATACTTACCGTTTCTAGATAGAATCAACGCGCTTGATGGACGCAAGGCTTACGCGACT 1650
||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 1487 ATATACTTACCGTTTCTAGATCGAATCAACGCGCTAGATGGACGCAAAGCTTACGCGACT 1546
Query 1651 CGAACCATATTGTTCTTGACCCGACTCGGTACACTCAAGCCTATCGCCATCGAGCTAAGC 1710
||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 1547 CGAACCATATTGTTCTTGACCCGTCTAGGTACACTCAAGCCTATAGCGATCGAGCTAAGC 1606
Query 1711 CTCCCTTCTCAATCAAGCTCAAACCAAAAGTCCAAGCGCGTGGTCACACCTCCAGTAGAC 1770
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 CTCCCGTCTCAATCAAGCTCAAACCAAAAGTCCAAGCGCGTGGTCACACCTCCAGTAGAC 1666
Query 1771 GCAACCTCCAACTGGATGTGGCAGCTAGCCAAGGCCCACGTTGGGTCCAATGACGCTGGT 1830
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1667 GCAACCTCCAACTGGATGTGGCAGCTAGCCAAGGCCCACGTTGGATCTAATGACGCTGGT 1726
Query 1831 GTCCACCAGCTTGTGAATCATTGGTTACGTACTCATGCGTGTTTGGAACCGTTTATATTA 1890
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1727 GTCCACCAGCTTGTGAATCATTGGTTACGTACTCACGCGTGTTTAGAGCCGTTTATATTA 1786
Query 1891 GCTGCTCATAGACAATTAAGCGCAATGCATCCGATATTCAAATTATTAGACCCTCACATG 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 GCTGCTCATAGACAATTAAGCGCAATGCATCCGATATTCAAATTATTAGACCCTCACATG 1846
Query 1951 AGGTACACTTTGGAGATCAATGCCGTGGCACGACAGACTTTGATTAGTGCGGACGGTGTG 2010
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1847 AGGTACACTTTGGAGATCAATGCCGTGGCACGACAGACTTTGATTAGCGCGGACGGTGTG 1906
Query 2011 ATCGAGTCGTGCTTCACTGCTGGTCAATACGGTCTAGAGATTAGTTCCGCTGCGTATAAG 2070
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 ATCGAGTCGTGCTTCACAGCTGGTCAATACGGTCTAGAGATTAGTTCCGCTGCGTATAAG 1966
Query 2071 AACAAATGGCGGTTTGATATGGAAGGTCTCCCTGCTGATCTCATCCGAAGGGGGATGGCT 2130
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1967 AACAAATGGCGGTTCGATATGGAAGGCCTCCCTGCTGATCTCATCCGAAGGGGAATGGCT 2026
Query 2131 GTTCCAGACCCAACACAACCACATGGGCTTAAATTACTTGTTGAAGACTACCCATACGCC 2190
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2027 GTTCCAGACCCAACACAACCACATGGGCTTAAATTACTTGTCGAAGACTACCCATACGCC 2086
Query 2191 AACGACGGTCTCTTATTATGGTCCGCAATCCAAACTTGGGTCCGAACCTACGTGGAACGT 2250
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2087 AACGACGGTCTCTTATTATGGTCCGCGATCCAAACCTGGGTCCGAACCTACGTGGAACGT 2146
Query 2251 TATTACGCAAACTCGAACCTAATCCAAACCGATA-CTGAGCTCCAAGCCTGGTACTCTGA 2309
|||||| || || |||| |||||||||||||| | | || ||||||||||||||||| ||
Sbjct 2147 TATTACCCAGACCCGAATCTAATCCAAACCGACATC-GAACTCCAAGCCTGGTACTCCGA 2205
Query 2310 GTCAATCAACGTAGGTCACGCTGATCACCGCGACGCCGAGTGGTGGCCGAAGCTTTCCAC 2369
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2206 GTCAATCAACGTAGGTCACGCCGATCACCGCGACGCCGAGTGGTGGCCGGAGCTTTCCAC 2265
Query 2370 CGTCGAAGATCTCGTCTCCGTCATCACCACCATCATCTGGCTCGCCTCGGCACAACACGC 2429
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2266 CGTCGAAGATCTCGTCTCTGTCATCACCACCATCATCTGGCTCGCCTCCGCACAACACGC 2325
Query 2430 GGCACTCAACTTCGGACAATATCCTTACGGTGGCTACGTCCCGAACCGACCACCGCTAAT 2489
||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||| | ||
Sbjct 2326 TGCACTCAACTTCGGACAATATCCTTACGGCGGCTATGTCCCAAACCGGCCACCGTTGAT 2385
Query 2490 GCGGCGGTTGATTCCCGACGAGTCAGATCCCGAGTTCACGAGTTTTATCGAAGATCCTCA 2549
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2386 GCGGCGGTTGATTCCCGACGAGTCAGATCCCGAGTTCGCGAGTTTTATCGAAGATCCTCA 2445
Query 2550 AAAGTATTTTTTCTCGTCGATGCCGAGTTTATTGCAAACGACGAAGTTTATGGCGGTGGT 2609
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2446 AAAGTATTTTTTCTCGTCGATGCCGAGTTTATTGCAGACGACGAAGTTTATGGCAGTGGT 2505
Query 2610 TGATACATTGTCGACACATTCGCCGGATGAGGAGTATATCGGAGAGAGACAACAACCGTC 2669
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2506 TGATACATTGTCAACACATTCACCGGATGAGGAGTATATCGGAGAGAGACAACAACCGTC 2565
Query 2670 GATATGGACTGGAGATGCTGAGATCGTAGATGCGTTTTATGGATTCTCGGCGGAAATCGG 2729
||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 2566 GATATGGACCGGAGATGCTGAGATTGTTGATGCGTTTTATGGATTTTCGGCGGAAATCGG 2625
Query 2730 ACGGATAGAGAAGGAGATTGACAAGAGGAATCGTGATCCTAGCCGTAGGAATCGCTGTGG 2789
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2626 ACGGATAGAGAAGGAGATTGAGAAGAGGAATCGTGATCCTAGCCGTAGGAATCGGTGTGG 2685
Query 2790 CGCGGGAGTGTTACCGTATGAGTTGATGGCTCCGAGTTCTGAACCGGGTGTTACGTGTAG 2849
||| ||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2686 CGCCGGAGTTTTACCGTACGAGTTGATGGCTCCAAGTTCTGAACCCGGTGTTACGTGTAG 2745
Query 2850 AGGAGTGCCTAATAGTGTATCTATTTAGAATTATTCAATTTTTCAAAGTATAGAGAATTT 2909
||| ||||||||||||||||| ||||||||||||| ||||| | |||||||||||||
Sbjct 2746 AGGCGTGCCTAATAGTGTATCCATTTAGAATTATTAAATTTG--A--GTATAGAGAATTT 2801
Query 2910 TATAAGTATATAATTAGATTTT-GACGCAG-TAT---G----GTTTATTTGCCGATATTG 2960
|||||||| |||| |||||||| | |||| ||| | |||||||||||||| |||
Sbjct 2802 TATAAGTAAATAAATAGATTTTTGTCGCAAATATTTTGTATAGTTTATTTGCCGATGTTG 2861
Query 2961 TAAAATTCTT 2970
||||||||||
Sbjct 2862 TAAAATTCTT 2871
> Ahg471947 jgi|Araly1|471947|fgenesh2_kg.1__1901__AT1G17420.1
Length=2898
Score = 2060 bits (1115), Expect = 0.0
Identities = 2220/2743 (81%), Gaps = 117/2743 (4%)
Strand=Plus/Plus
Query 185 TCAAGAAGAAGACACAGAGAACACAGTTCTCCATCAACCCTTTTGATCCG-AGACCTATG 243
||||||||| |||||||| ||| || ||||| |||||||||||||| ||| ||||| | |
Sbjct 176 TCAAGAAGAGGACACAGACAACGCAATTCTCGATCAACCCTTTTGA-CCGCAGACC-AAG 233
Query 244 -AGAGCCGTTAACTCAAGCGGCGTTGTAGCGGCCATCAGCGAGGATTTGGTTAAAACGCT 302
| | || || || |||||| || |||||||||||||| |||||||| ||||||||
Sbjct 234 AAAAACC---AAATC---CGGCGTCGTTGCGGCCATCAGCGAAGATTTGGTCAAAACGCT 287
Query 303 GCG-TATT--AGC-ACTGTCGGTAGA-A-AACA-AGAGAAGGAGGAAGAAGAGGAGAAGT 355
||| | || | | || ||| ||| | || | || ||| ||||||| ||| || |
Sbjct 288 GCGTTTTTCCA-CAACAACCGG-AGACAGAA-AGAGCGAA-GAGGAAG-AGA-AAG-CGG 340
Query 356 CGGTGAAGTTTAAGGTGAGAGCAGTTGCGACGGTGAGGAACAAAAACAAAGAGGATTTTA 415
||||||| || ||||||||||| || | || ||||||||||| ||||| |||||||| |
Sbjct 341 CGGTGAAATTCAAGGTGAGAGCTGTGGTTACTGTGAGGAACAAGAACAAGGAGGATTTAA 400
Query 416 AAGAAACT-TTGGTTAAGCATTTGGATGCTTTTACTGATAAAATTGGTAGAAACGTTGTC 474
|||| ||| || ||||||||||||||||||||| |||||||||||||| | ||| | |||
Sbjct 401 AAGAGACTCTT-GTTAAGCATTTGGATGCTTTTGCTGATAAAATTGGTCGTAACATCGTC 459
Query 475 TTGGAGCTTATGAGTACCCAAGTTGATCCAAAAACGAATG-AGCCAAAGAAGAGTAAAGC 533
||||||||||| || |||||| |||||||||||||| | | ||||||||||||||| ||
Sbjct 460 TTGGAGCTTATTAGCACCCAACTTGATCCAAAAACG-AGGTTGCCAAAGAAGAGTAATGC 518
Query 534 GGCAGTTTTGAAA-GATTGGTCAAAGAAATC-AAATTCAAAGGCGGAAAGAGTCCATTAC 591
|| ||||| ||| ||||||||||||||||| ||| | |||||||| ||||| || |||
Sbjct 519 AGCGGTTTT-AAAGGATTGGTCAAAGAAATCGAAA-ACGAAGGCGGATAGAGTTCACTAC 576
Query 592 ACGGCCGAGTTCACGGTGGATTCAGCCTTTGGTTCTCCGGGAGCCATCACCGTGACCAAC 651
||||| |||||||||||||| |||| ||||| || ||||||||||||||||| | ||
Sbjct 577 ACGGCGGAGTTCACGGTGGACGCAGCGTTTGGCTCGCCGGGAGCCATCACCGTTATGAAT 636
Query 652 AAACACCAAAAAGAGTTCTTTCTT-GAGAGCATCACCATCGAGGGTTTCGCA-TGTGGCC 709
|||||||| |||||||| |||||| |||||||| |||||||| || |||||| | ||| |
Sbjct 637 AAACACCAGAAAGAGTT-TTTCTTGGAGAGCATAACCATCGAAGGCTTCGCACT-TGGTC 694
Query 710 CTGTTCACTTCCCCTGCAACTCTTGGGTCCAATCTCAAAAAGACCATCCAT-CCAAACGA 768
|||||||||| || ||||| |||||||| || || |||||||| || || | ||||||
Sbjct 695 CTGTTCACTTTCCATGCAATTCTTGGGTTCAGTCCCAAAAAGATCA-CCCTGAAAAACGA 753
Query 769 ATTC-TCTTCACTAATCAGCCTTACTTGCCGAGCGAGACACC-GTCCGG-TCTAAGAACA 825
| || |||||||||||||||| || ||||||| |||||||| | ||| | ||||| |
Sbjct 754 A-TCTTCTTCACTAATCAGCCGTATTTGCCGAATGAGACACCAG-GCGGAT-TAAGAGTA 810
Query 826 TTAAGGGAGAAAGAATTGGAGAATCTAAGAGGAAATGGTAAAGGAGAAAGAAAATTATCA 885
|| ||||| ||||| ||| |||||||| ||||| |||| | |||| |||||||||||||
Sbjct 811 TTGAGGGAAAAAGAGTTGAAGAATCTACGAGGAGATGGGAGTGGAGTAAGAAAATTATCA 870
Query 886 GACAGAATCTACGA-TTATGATGTGTACAACGACATAGGAAATCCGGACATA-TC-ACGT 942
|||||||| ||||| || |||||| ||||||||| | |||||||| |||| | || | |
Sbjct 871 GACAGAATTTACGACTT-TGATGTTTACAACGACCTTGGAAATCCCGACA-AGTCTTC-T 927
Query 943 GAACTAGCCCGTCCCACACTTGGTGGCCGTGA-ATTTCCTTACCCTAGACGCTGTCGAAC 1001
||||| | || |||| |||||| |||| || | |||||||||||||||| ||||| ||
Sbjct 928 GAACTCTCTCGCCCCAAACTTGGCGGCCAAGAGA-TTCCTTACCCTAGACGTTGTCGTAC 986
Query 1002 CGGCCGGTC-TTCAACCGACACCGAT-ATGATGTCTGAGAGGCGGGTGGAGAAACCATTA 1059
|| | | | |||| | | ||| | || | | ||||| || || ||||| ||| ||
Sbjct 987 TGGTC-GCCAAACAACAGTTTCTGATAAAGAAG-CGGAGAGCCGAGTAGAGAAGCCACTA 1044
Query 1060 CCGATGTATGTGCCAAGAGATGAGCAGTTCGAGGAGTCTAAGC-AGAACACTTTTGCTGC 1118
|||||||| |||||| |||| ||||| ||||| |||||||| | || ||||||| |||||
Sbjct 1045 CCGATGTACGTGCCACGAGACGAGCAATTCGAAGAGTCTAAACAAG-ACACTTTCGCTGC 1103
Query 1119 ATGTAGACTTAAGGCGGTTTTACATAACCTTATACCTTCACTAAAAGCTAGCATTTTGGC 1178
| | ||||| || ||||| || || |||| || || || || |||||||| ||| | ||
Sbjct 1104 AGGGAGACTAAAAGCGGTCTTGCACCACCTAATTCCGTCGCTCAAAGCTAGTATTGTAGC 1163
Query 1179 TGAGGACTTCGCTA-ACTTTGGTGAGATCGATAGTCTTTACAAAGAAGGCTTGCTT-CTC 1236
||||||||| || | |||| || || ||||||||||| || |||||||||||| || |||
Sbjct 1164 TGAGGACTTTGC-AGACTTCGGCGAAATCGATAGTCTCTATAAAGAAGGCTTG-TTACTC 1221
Query 1237 AAGTTAGGGTTTCAAGATGATATGTTCAAGAAATTCCCTTTACCGAAGATCGTC----AC 1292
|||||||||||||||||||| || || ||||| |||||||| || ||| ||||| |
Sbjct 1222 AAGTTAGGGTTTCAAGATGACATCTTTAAGAAGTTCCCTTTGCCTAAGGTCGTCGTTGA- 1280
Query 1293 TACCCTCCAAAAATC-AAGCGAGGGCTTGCTTAGATACGACACTCCTAAAATAGTT-TCA 1350
|||||||||| |||| | ||| | | || | ||||||||| || |||||| || ||
Sbjct 1281 TACCCTCCAAGAATCTACTAAAGGAC-TCCTCAAATACGACACCCCAAAAATA-TTATCG 1338
Query 1351 AAGGATAAATATGCATGGCTTCGAGATGACGAGTTCGCACGCCAAGCCATAGCTGGGATC 1410
||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| |||
Sbjct 1339 AAGGATAAAAATGCATGGCTAAGAGATGACGAGTTCGCACGTCAAGCCATAGCTGGAATC 1398
Query 1411 AACCCGGTCAACATAGA-ACGAGTCACGTCTTATCCACCGGTCAGCAATCTTGACCCTGA 1469
|| || || ||||| || | |||||| | |||||||||||||||||||||||||||| |
Sbjct 1399 AATCCAGTGAACATTGAGA-GAGTCAAGACTTATCCACCGGTCAGCAATCTTGACCCC-A 1456
Query 1470 A-ATCTACGGACCAGGTCTTCACTCCGCTCTCACGGAAGACCACATCATCGGTCAACTTG 1528
| |||||||| ||| | ||||| |||||||| | ||||| ||||| ||||| || |
Sbjct 1457 AGATCTACGGTCCA---CAACACTCAGCTCTCACTCACGACCATATCATTGGTCACCTCG 1513
Query 1529 ATGGCTTAACCGTACAACAAGCGTTAGA-GACGAACCGTTTGTTTATGGTGGACTACCAT 1587
| || || |||||||||||||||| || || ||| | |||| |||| |||| ||||||
Sbjct 1514 ACGGATTCTCCGTACAACAAGCGTTGGAAGA-GAATAGATTGTATATGTTGGATTACCAT 1572
Query 1588 GACATATACTTACCGTTTCTAGATAGAATCAACGCGCTTGATGGACGCAAGGCTTACGCG 1647
||||||| ||||||||| ||||| | ||||| ||| | ||||||||||| ||||| ||
Sbjct 1573 GACATATTCTTACCGTTCCTAGACCGGATCAATGCGGTAGATGGACGCAAAGCTTATGCT 1632
Query 1648 ACTCGAACCATATTGTTCTTGACCCGACTCGGTACACTCAAGCCTATCGCCATCGAGCTA 1707
||||||||||| || |||||||| || ||||||||||| |||||| | ||||| ||||||
Sbjct 1633 ACTCGAACCATTTTCTTCTTGACTCGTCTCGGTACACTGAAGCCTGTAGCCATTGAGCTA 1692
Query 1708 AGCCTCCCTTCTCAATCAAGCTC-AAACCAAAAGTCCAAGCGCGTGGTCACACCTCCAGT 1766
||||||||| | |||| || | |||| | ||||||||| ||| | |||||||||||
Sbjct 1693 AGCCTCCCTCC-CAATG--GCCCGAAAC-ATCGGTCCAAGCGTGTGCTTACACCTCCAGT 1748
Query 1767 AGACGCAACCTCCAACTGGATGTGGCAGCTAGCCAAGGCCCACGTTGGGTCCAATGACGC 1826
|| ||||||||||||||||||||||| || || || ||||||||| | || || || ||
Sbjct 1749 CGATGCAACCTCCAACTGGATGTGGCAACTCGCTAAAGCCCACGTTAGTTCTAACGATGC 1808
Query 1827 TGGTGTCCACCAGCTTGTGAATCATTGGTTACGTACTCATGCGTGTTTGGAACCGTTTAT 1886
||||||||| || ||||| ||||| |||||||| |||||||| || ||||| || |||||
Sbjct 1809 TGGTGTCCATCAACTTGTCAATCACTGGTTACGGACTCATGCATGCTTGGAGCCTTTTAT 1868
Query 1887 ATTAGCTGCTCATAGACAATTAAGCGCAATGCATCCGATATTCAAATTATTAGACCCTCA 1946
||||||||| ||||| || || ||||| ||||||||||||||||| || | || || ||
Sbjct 1869 ATTAGCTGCGCATAGGCAGTTGAGCGCTATGCATCCGATATTCAAGCTACTGGATCCGCA 1928
Query 1947 CATGAGGTACACTTTGGAGATCAATGCCGTGGC-ACGACAGA-CTTTGATTAGTGCGGAC 2004
|||||||||||| ||||| |||||||| |||| | |||| | | ||||| ||||| ||
Sbjct 1929 CATGAGGTACACGTTGGAAATCAATGCATTGGCGA-GACA-ATCGTTGATCAGTGCAGAT 1986
Query 2005 GGTGTGATCGA-GTCGTGCTTCACTGCTGGT-CAATACGGTC-TAGAGATTAGTTCCGCT 2061
||||||||||| | | |||||||||| || || ||||| | | || || || | ||
Sbjct 1987 GGTGTGATCGAAGGAG-GCTTCACTGCCGGCGCA-TACGG-CATGGAAATGAGCGCTGCC 2043
Query 2062 GCGTATAAGAA-CAAATGGCGGTTTGATATGGAAGGTCTCCCTGCTGATCTCATCCGAAG 2120
|| ||||| || || |||||||| || |||||||| ||||| || |||||||| || ||
Sbjct 2044 GCATATAA-AAGCAGCTGGCGGTTCGACATGGAAGGCCTCCCCGCCGATCTCATTCGCAG 2102
Query 2121 GGGGATGGCTGTTCCAGACCCAACACAACCACATGGGCTTAAATTACTTGTTGAAGACTA 2180
|| || || |||| || || ||||||||||||| |||||| | || | ||||||||
Sbjct 2103 AGGAATAGCAATTCCTGATGCATCACAACCACATGGTCTTAAACTCCTAATCGAAGACTA 2162
Query 2181 CCCATACGCCAACGACGGTCTCTTATTATGGTCCGCAATCCAAACTTGGGTCCGAACCTA 2240
|| ||||||||||||||||| ||| | |||||||| |||||||| |||||||| |||||
Sbjct 2163 TCCGTACGCCAACGACGGTCTTTTACTCTGGTCCGCCATCCAAACCTGGGTCCGCACCTA 2222
Query 2241 CGTGGAACGTTATTACGCAAACTCGAACCTAATCCAAACCGA-TACTGAGCTCCAAGCCT 2299
||||||||| || ||| ||||| ||| ||||||| |||| || | ||||||||||| ||
Sbjct 2223 CGTGGAACGCTACTACTCAAACCCGAGCCTAATCAAAACAGACT-CTGAGCTCCAAAACT 2281
Query 2300 GGTACTCTGAGTCAATCAACGTAGGTCACGCTGATCACCGCGACGCCGAGTGGTGGCCGA 2359
||||||| || ||||||||||| || ||||| || | ||||||||| || |||||||||
Sbjct 2282 GGTACTCCGAATCAATCAACGTCGGCCACGCCGACCTCCGCGACGCTGATTGGTGGCCGG 2341
Query 2360 AGCTT-TCCACCGTCGAAGATCTCGTCTCCG-T-CATCACCACCATCATCTGGCTCGCCT 2416
|| || || |||||||| || || || || | | | |||||||| | |||||||| ||||
Sbjct 2342 AG-TTATCAACCGTCGACGACCTTGTGTC-GATTC-TCACCACCTTAATCTGGCTAGCCT 2398
Query 2417 CGGCACAACACGCGGCACTCAACTTCGGACAATATCCTTACGGTGGCTACGTCCCGAACC 2476
| ||||||||||| || | |||||||||||||| || ||||| ||||||||||| ||||
Sbjct 2399 CAGCACAACACGCCGCTTTAAACTTCGGACAATACCCGTACGGCGGCTACGTCCCAAACC 2458
Query 2477 GACCACCGCTAATGCGGCGGTTGATTCCCG-ACGAGTCAGATCCCGAGT-TCACGAGTTT 2534
|||| ||| | ||||| ||||| || |||| ||||||| ||||| |||| | |||| ||
Sbjct 2459 GACCTCCGTTGATGCGACGGTTAAT-CCCGGACGAGTCGGATCCAGAGTATG-CGAGCTT 2516
Query 2535 TATCGA-AGATCCTCAAAAGTATTTTTTCTCGTCGATGCCGAGTTTATTGCAAACGACGA 2593
|||| | |||| | ||||||| |||||||||||||||||||| ||| || |||
Sbjct 2517 TATCTCTA-ATCCGGAGAAGTATTACTTCTCGTCGATGCCGAGTTTGGCGCAGACTTCGA 2575
Query 2594 AGTTTATGGCGGTGGTTGATACATTGTCGACACATTCGCCGGATGAGGAGTATATCGGAG 2653
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| || |
Sbjct 2576 AGTTTATGGCTGTGGTTGATACTTTGTCGACGCATTCGCCGGATGAGGAGTATATTGGGG 2635
Query 2654 AGAGACAACAACCGTCGATATGGACTGGAGATGCTGAGATCGTAGATGCGTTTTATGGAT 2713
|||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 2636 AGAGACAACAGCCGTCGATTTGGACTGGAGATGCAGAGATCGTTGATGCGTTTTATGGAT 2695
Query 2714 TCT-CGGCGGAAATCGGACGGATAGAGAAGGAGATTGACAAGAGGAATCG-TGATCCT-A 2770
| | || |||| ||||||||||||||||| |||||||| || ||||| || ||||||| |
Sbjct 2696 T-TGCGACGGAGATCGGACGGATAGAGAAAGAGATTGAGAAAAGGAA-CGCTGATCCTGA 2753
Query 2771 GCCGTAGGAATCGCTGTGGCGCGGGAGTGTTACCGTATGAGTTGATGGCTCCGAGTTCTG 2830
|||||| ||| | ||||| || || || || || ||||||||| ||| |||||||||||
Sbjct 2754 -CCGTAGAAATAGGTGTGGGGCTGGTGTTTTGCCTTATGAGTTGTTGGTTCCGAGTTCTG 2812
Query 2831 AACCGGGTGTTACGTGTAGAGGAGTGCCTAATAGTGTATCTAT 2873
| || ||||||||||||||||| || |||||||||||||||||
Sbjct 2813 AGCCTGGTGTTACGTGTAGAGGTGTACCTAATAGTGTATCTAT 2855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114880178920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5