BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72530.2
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908864 jgi|Araly1|908864|Al_scaffold_0002_1945 832 0.0
> Ahg908864 jgi|Araly1|908864|Al_scaffold_0002_1945
Length=567
Score = 832 bits (450), Expect = 0.0
Identities = 540/581 (93%), Gaps = 16/581 (3%)
Strand=Plus/Plus
Query 1 ATGGCGAGGATCATCAGAAGACCGTTAAATTTGACGGCGGCCGTCCGGTTCCGACTT-TC 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGCGAGGATCATCAGAAGACCGTTAAATTTGACGGCGGCCGTCCGGTTCCGACTTGT- 59
Query 60 TCCGTTGTCTCCATTCTCCGGTAACTCTGGTTCTATTAACTCGGAAACGACTAGTTGGTC 119
|||||| |||||||||||||||||||||||||| ||||||||| |||||| |||| ||
Sbjct 60 TCCGTTATCTCCATTCTCCGGTAACTCTGGTTCCGTTAACTCGGGTACGACTCGTTGCTC 119
Query 120 TGAGTTAATTCGAGTACCGAGTTTAGTCGAGGGATGCGATTACAAGCACTGGCTGGTTCT 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGAGTTAATTCGAGTATCGAGTTTAGTCGAGGGATGCGATTACAAGCACTGGCTGGTTCT 179
Query 180 CATGAAGCCTCCCAATGGATACCCAACTCGAAATCACATTGTCCAAAGCTTTGTCGAAAC 239
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 180 CATGAAGCCTCCCAATGGATACCCAACTCGAAATCACATCGTCCAACGCTTTGTCGAAAC 239
Query 240 CCTAGCCATGGCTCTAGGGAGCGAAGAAGAAGCTAAGAGATCGATATACTCTGTATCTAC 299
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 240 CCTAGCCATGGCTCTAGGGAGCGAAGAAGAAGCTAAAAAATCGATATACTCTGTATCTAC 299
Query 300 AAAGTACTACTATGCATTTGGCTGCAGGATTCATGAACCTTTGACTTACAAGATTAGATC 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 AAAGTACTACTATGCATTTGGCTGCAGGGTTCATGAACCTTTGACTTACAAGATTAGATC 359
Query 360 TCTGCCTGATGTTAAATGGGTTTTACCAGATTCGTTTATAGTGGATGGTGACAATAGATA 419
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 360 TCTGCCTGATGTTAAATGGGTTTTACCAGATTCGTATATTGTGGATGGTGACAATAGATA 419
Query 420 CGGAGttttttttGCAGGAGAGCCGTTTGTCGATGGAGAAGTTGTTCCGTATGATGAGAA 479
|||| | || || ||||||||||||||||| || ||||| |||||||||||
Sbjct 420 TGGAG--------G-AG-AG--CCGTTTGTCGATGGAGAGGTCGTTCCATATGATGAGAA 467
Query 480 GTATCATGCGGACTGGCTACGAGATCAAACTGATGAGGATGCTAA-AAGCGGAGTAGTCA 538
|||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||
Sbjct 468 GTATCATGCGGACTGGCTACGAGATCAAACTGATGATGATGCTAATAACCG-AGTAGTCA 526
Query 539 AAAAGAAGCATAGGAGGAAAAGAAAGAAGAAGTTGATTTAA 579
| ||||||| ||||||||||| ||||||||||||||| |||
Sbjct 527 AGAAGAAGCCTAGGAGGAAAACAAAGAAGAAGTTGATCTAA 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5