BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72550.1
Length=2185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476389 jgi|Araly1|476389|fgenesh2_kg.2__1519__AT1G72550.2 2715 0.0
> Ahg476389 jgi|Araly1|476389|fgenesh2_kg.2__1519__AT1G72550.2
Length=1858
Score = 2715 bits (1470), Expect = 0.0
Identities = 1762/1897 (93%), Gaps = 43/1897 (2%)
Strand=Plus/Plus
Query 34 AAACCCTAGTTCCAAAATCTGCACACACACTCAGAAGAAGAAGACGTCATCTCTCTATCT 93
||||||||||||||||||| || | |||||| |||||||||| ||||||||||||
Sbjct 1 AAACCCTAGTTCCAAAATCAGC-C-CACACT---AAGAAGAAGAAGTCATCTCTCTA--- 52
Query 94 CTGTCTTTCTGCTAATTTCACGAAGAATCTGAGAATATGCCAACCATCAGTGTTGGCAGA 153
|||||||||||||||||| | |||| ||||||||||||||||||||| ||||||||
Sbjct 53 ---TCTTTCTGCTAATTTCAC--A-AATCCGAGAATATGCCAACCATCAGTATTGGCAGA 106
Query 154 GACCGTTTGTTCGCTGCTCTTGGAGAATCCTATACTCAGGAAAAATTCGAGGAACTGTG- 212
||||| || ||||||||||||||| | ||||| ||||||||| |||||||||| |||||
Sbjct 107 GACCGGTTATTCGCTGCTCTTGGACAGTCCTACACTCAGGAAGAATTCGAGGATCTGTGT 166
Query 213 TTTCAGTTTCGGTATCGAGCTTGACGATGTGACTACTGAAAAGGCAATAATCAGAAAAGA 272
|||| ||||||||||||||||||| |||||||||||||| |||||||| || || |||||
Sbjct 167 TTTC-GTTTCGGTATCGAGCTTGATGATGTGACTACTGAGAAGGCAATTATAAGGAAAGA 225
Query 273 GAAGCACATCGATGAAGAAGCTGATGATGATGAAGAAATCATCTACAAGATTGAAATTCC 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GAAGCACATCGATGAAGAAGCTGATGATGATGAAGAAATCATCTACAAGATTGAAATTCC 285
Query 333 TGCCAACAGACCTGATTTGCTTTGCCTCGAAGGGCTTGCTCAATCTCTTCGCGTTTTCAT 392
|||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 286 TGCCAACAGATATGATTTGCTTTGCCTCGAAGGGCTTGCGCAAGCTCTTCGCGTTTTCAA 345
Query 393 CGAGAAACAGGAGATACCAACGTATACTCTTGCTGACATTAGCAAAGACAAGATCCTTCA 452
| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 346 CAAGAAACAGGAGATACCAACGTATACCCTTGCTGACATTAGCAAAGACAAGCTCCTTAA 405
Query 453 AATGAATGTTAAACCTGAGACATCGAAGATTCGTCCATTTGTTGTATGTGCTGTTTTAAG 512
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 406 AATGAATGTTAAACCTGAGACATCGAAGATTCGCCCATTTGTCGTATGTGCTGTTTTAAG 465
Query 513 AGGTGTAACCTTTGACGAGGCTCGTTACAACAGCTTCATTGATCTTCAGGATAAGTTACA 572
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 466 AGGTGTAACGTTTGACGAGGCTCGTTACAACAGCTTCATTGATCTTCAGGATAAGCTACA 525
Query 573 TCAGAATATTTGCAGGCGAAGGTCCTTGGTTGCTATTGGAACTCATGACCTTGATACATT 632
||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 526 TCAGAATATTTGCCGGCGAAGATCCCTGGTTGCAATTGGAACTCATGACCTTGATACATT 585
Query 633 GCAGGGTCCTTTCACATACGAGGCTTTGCCGCCAACGGATATAAATTTTGTACCTTTGAA 692
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 586 GCAGGGCCCATTCACATACGAGGCTTTGCCGCCAACGGAGATAAATTTTGTACCTTTGAA 645
Query 693 GCAAACAAAGAGCTTCAGGGCTGACGAACTTATTGAATTCTACAAGTCTGATATGAAGCT 752
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 646 GCAAACAAAGAGCTTCAGGGCTGATGAACTAATTGAATTCTACAAGTCAGATATGAAGCT 705
Query 753 GAAAAAGTTTCTACACATAATCGAGAATTCACCCGTCTTCCCTGTTTTATACGACAGTAA 812
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GAAAAAATTCCTACACATAATCGAGAATTCACCCGTCTTCCCTGTTTTATACGACAGTAA 765
Query 813 GAGAACTGTGCTGTCATTGCCACCTATTATCAATGGTGCACATTCAGCAATTACCTTACA 872
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 766 GAGAACTGTGCTGTCATTGCCGCCTATTATCAATGGTGCACATTCAGCAATTACCTTACA 825
Query 873 GACAAAGAATGTCTTCATTGAATGTACTGCAACTGATTTGACGAAGGCCAAGATTGTTTT 932
||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 826 GACAAAGAATGTCCTCATTGAATGTACAGCAACTGATTTGACGAAGGCCAAAATTGTTTT 885
Query 933 GAATACAATGGTTACAACCTTCTCAGAATTTTGTGCCAGAAAATTTGAGATTGAGCCTGT 992
||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct 886 GAATACAATGGTTACAACCTTTTCAGAATATTGTGCGAGAAAATTTGAGATTGAGCCTGT 945
Query 993 TGAAGTTACATACGACGATGGAAAGTCATACATCTATCCGGATTTAGCTGTCTATGATAT 1052
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TGAAGTTACGTACGACGATGGAAAGTCATACATCTATCCGGATTTAGCTGTCTATGATAT 1005
Query 1053 GGAAGTTCCTCTCTCTTTCATTACAGACTCAATTGGAGTCTCTTTAAAGGTGGAACAGGT 1112
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1006 GGAAGTTCCTCTCTCTTACATTACAGACTCAATTGGAGTCTCTTTGGAGGTGGAACAGGT 1065
Query 1113 TACAAGTCTGCTGACCCGAATGCAGCTGCAAGCTGAGCAAGCAAAATCTAGTGATAACCA 1172
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1066 TACAAGTCTGCTGACCCGAATGCAGTTGCATGCTGAGCAAGCAAAATCTAGTGATAACCA 1125
Query 1173 GTGTGCCATCAAAGTACATGTACCCCCCAGCAGGAGCGACGTTCTCCACCCTTGTGATGT 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 GTGTGCCATCAAAGTACATGTACCCCCCAGCAGGAGCGACGTTCTCCACCCTTGTGATGT 1185
Query 1233 TATGGAGGATGTTGCCATTGCCTATGGTTTCAATAACATTCCAACAAGAAAGCCTGCTTC 1292
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1186 TATGGAGGATGTTGCCATTGCCTATGGTTTCAATAACATCCCAACAAGAAAGCCTGCTTC 1245
Query 1293 GATAAAACCACTGACTTTGAATGAGCTCACTGATCTTCTAAGAATAGAGATTGCGATGTG 1352
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GATAAAACCACTGCCTTTGAATGAGCTCACTGATCTTCTAAGAATAGAGATTGCGATGAA 1305
Query 1353 TGTGTACACGGAGGTGGTAACGTGGCTACTATGCTCACATAAGGAAAACTTTGCGATGCT 1412
||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1306 TGTGTACACCGAGGTGGTAACGTGGCTACTATGCTCGCATAAAGAGAACTTTGCGATGCT 1365
Query 1413 AAATAGAGAGGATGTTAATTCAGCCGTCATAGTTGGGAACCCGCGGTCTGCTGATTTTGA 1472
|||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1366 AAATAGAGTGGATGATAACTCAGCCGTCATAATTGGGAACCCGCGGTCTGCTGATTTTGA 1425
Query 1473 GGCCATGAGGAGGGCTCTCATGCCCGG-ATTATTGAAGACAGTTGGT-CACAACAATAAA 1530
||||||||||||| |||| |||||||| || |||||||||||||||| | |||||| | |
Sbjct 1426 GGCCATGAGGAGGACTCTGATGCCCGGGAT-ATTGAAGACAGTTGGTTC-CAACAA-AGA 1482
Query 1531 T-ACCCTAAACCAATTAAGATTTTTGAAATCAGTGATGTGGTCATGTTGGATGAGAGCAA 1589
||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct 1483 CCACCCTAAACCAATTAAGATTTATGAAATCAGTGATGTGGCCATGTTGGACGAGAGCAA 1542
Query 1590 AGACGTTGGTGCATCCAATCGTCGCCATCTCGCTGCACTATACTGTGGTGCTACTTCTGG 1649
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1543 AGATGTTGGTGCATCCAATCGTCGCCATCTCGCTGCACTACACTGTGGTGCTACTTCTGG 1602
Query 1650 ATTTGAGCTTATCCATGGCCTGGTCGATAGGATCATGGAAGTGATGGCAATACCATTTCT 1709
||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||| |
Sbjct 1603 ATTTGAGCTTATCCATGGCCTCGTGGATAGAATTATGGAAGTGATGGCAATCCCATTTGT 1662
Query 1710 AACAATCCATGAAAATAACGTACCAATCAATGAAAAAGACGGATACTATGTAAAGCTCTC 1769
|| |||| | | | | || ||| || |||||||||| ||||||||||
Sbjct 1663 AAAAATC-A--A---T---G-AC-AAT-AA---------CGGATACTATATAAAGCTCTC 1701
Query 1770 CCAAGAACCCGAGTTTCTACCGGGCAGGCAAGCTAGCATCATTGTCAGAGGGAAACATAT 1829
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1702 TCAAGAGCCCGAGTTTCTACCGGGCAGGCAAGCTAGCATCGTTGTCAGAGGGAAACAAAT 1761
Query 1830 TGGTAACTTTGGAATCGTGCATCCTGAGGTTTTGAACAACTTTGACATCCCTGATCCATG 1889
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1762 TGGTAACTTTGGAATCGTGCATCCTCAGGTTTTGAACAACTTTGACATCCCTGATCCATG 1821
Query 1890 CTCTTACTTGGAGTTAGACATCGAAGCTATCTTATAG 1926
||||| | ||||| |||||||||||||| ||||||||
Sbjct 1822 CTCTTTCGTGGAGATAGACATCGAAGCTCTCTTATAG 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82236838955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5