BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72570.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316221 jgi|Araly1|316221|fgenesh1_pm.C_scaffold_2001254 1576 0.0
> Ahg316221 jgi|Araly1|316221|fgenesh1_pm.C_scaffold_2001254
Length=1287
Score = 1576 bits (853), Expect = 0.0
Identities = 1076/1180 (91%), Gaps = 29/1180 (2%)
Strand=Plus/Plus
Query 83 CCGATGTTTGGAGATATGATATTAA-CTT--TGATCATCATCATCAT---GATGAAGACG 136
||| ||||||| ||||||||||||| ||| | |||||||||||||| |||| || |
Sbjct 123 CCG-TGTTTGGGGATATGATATTAACCTTGATCATCATCATCATCATCAACATGATGAAG 181
Query 137 TTCCAAAGGTGGAAGATCTCCTCTCAAACTCTCATCAAACCGAGTATCCTATAAACC-AT 195
| || |||||||| ||| | ||||||||||||||||| |||||||||||| | ||| ||
Sbjct 182 TGCCGAAGGTGGAGGATTTGCTCTCAAACTCTCATCAGACCGAGTATCCT-TTGACCAAT 240
Query 196 AACCAAACCAATGTCAACTGCACCACTGTGGTTAACAGGTTAAACCCACCCGGTTACCTT 255
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 241 AACCAAACCAATGTCAACTGCACCACCGTGGTTAACAGATTAAACCCACCCGGTTACCTT 300
Query 256 CTCCACGACCAAACCGTAGTTACACCACATTACCCGAACCTAGATCCGAACCTTAGCAAT 315
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||| | | ||
Sbjct 301 CTCCACGAACAAACCGTAGTTACACCACAATACCCGAACCTAGATCCAAACCTAACCCAT 360
Query 316 GATTATGGAGGTTTTGAGAGGGTCGGTTCGGTCTCGGTTTTCAAATCTTGGTTAGAGCAA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 GATTATGGAGGTTTTGAGAGGGTCGGTTCGGTCTCGGTTTTCAAATCTTGGTTAGGGCAA 420
Query 376 GGCACTCCAGCATTCCCACTCTCGAGTCA-TTACGTTACTGAAGAGGCTGGTACGAGCAA 434
||||||||| |||| | |||||||||| | |||||| |||||||||| ||||||||||||
Sbjct 421 GGCACTCCAACATTTCAACTCTCGAGT-ACTTACGTCACTGAAGAGGGTGGTACGAGCAA 479
Query 435 TAATATTAGTCATTTTAGTAACGAAGAGACTGGTTATAACACCAATGGCTCAATGCTATC 494
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 480 TAATATTAGTCATTTTAGTAACGAAGAGACTGGTTATAACACCAATGGCTCGAGGCTATC 539
Query 495 ATTGGCTTTGAGCCATGGGGCTTGTTCTGATTTGATCAACGAATCGAATGTATCCGCA-- 552
||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | |
Sbjct 540 ATTGGCTTTGAGCCATGGGGCTTGTTCTGATTTGATCAACGAAACGAATGCATCTGTAGT 599
Query 553 -CGGGTCGAAGAACCGGTTAAGGTAGATGAGAAGCGGAAGAGATTGGTTGTTAAACCTCA 611
| ||| |||||||| ||||| ||||||||||||||||||||||| || ||| ||||
Sbjct 600 GCCGGTAGAAGAACCAGTTAAAATAGATGAGAAGCGGAAGAGATTGACTGGCAAATCTCA 659
Query 612 GGTA-AAGGAATCCGTTCCTCGGAAGTCGGTTGATAGTTAT-GGACAAAGAACTTCTCAG 669
|| | ||||| | ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 660 GG-AGAAGGATTTGGTTCCTCGGAAGTCGGTTGATAGTT-TCGGACAAAGAACTTCTCAG 717
Query 670 TATCGTGGAGTTACAAGGCATAGATGGACAGGGAGATATGAAGCTCACTTATGGGATAAT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TATCGTGGAGTTACAAGGCATAGATGGACAGGGAGATATGAAGCTCACTTATGGGATAAT 777
Query 730 AGCTGTAAGAAGGAGGGACAGACAAGGAGAGGAAGACAAGTGTATCTTGGAGGGTATGAT 789
||||||||||| ||||| |||||||||| ||||||||||| | | || | ||||||
Sbjct 778 AGCTGTAAGAAAGAGGGTCAGACAAGGAAAGGAAGACAAG-G-A----GG-G--TATGAT 828
Query 790 GAGGAGGAGAAAGCAGCGAGGGCATATGATTTAGCGGCTCTGAAGTATTGGGGTCCTACC 849
|| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 829 GATGAGAAGAAAGCAGCGAGGGCTTATGATTTAGCGGCTCTGAAGTATTGGGGTCCTACC 888
Query 850 ACTCACTTAAATTTCCCTTTGAGTAATTACGAAAAGGAGATCGAGGAACTCAATAACATG 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACTCACTTAAATTTCCCTTTGAGTAATTACGAAAAGGAGATCGAGGAACTCAATAACATG 948
Query 910 AATCGGCAAGAATTTGTTGCCATGTTGAGGAGGAATAGCAGCGGGTTTTCGAGGGGAGCT 969
||| |||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 949 AATAGGCAAGAATTTGTTGCCATGCTGAGGAGGAACAGTAGCGGGTTTTCGAGGGGAGCT 1008
Query 970 TCCGTGTATAGAGGAGTTACAAGGCATCATCAACATGGAAGGTGGCAAGCCAGAATTGGA 1029
|| | || |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1009 TCAATTTACAGAGGAGTTACAAGGCATCATCAACATGGAAGATGGCAAGCTAGAATTGGA 1068
Query 1030 AGAGTTGCTGGAAACAAGGACTTGTACCTTGGAACATTTAGCACGCAAGAAGAAGCAGCG 1089
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1069 AGAGTTGCTGGAAACAAAGACTTGTACCTTGGCACATTTAGCACGCAAGAAGAAGCAGCA 1128
Query 1090 GAGGCGTACGATATCGCGGCAATTAAATTCAGAGGCCTAAACGCTGTAACCAATTTCGAT 1149
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1129 GAGGCGTACGATATCGCGGCAATTAAATTCAGAGGCCTAAATGCTGTAACTAATTTCGAT 1188
Query 1150 ATAAATAGATATGACGTGAAGAGGATATGTTCAAGCTCAACGATTGTTGA-TAGCGACCA 1208
|| || |||||||||||||||||||||||||||||||| |||||| || | |||||||||
Sbjct 1189 ATTAACAGATATGACGTGAAGAGGATATGTTCAAGCTCTACGATT-TTCAATAGCGACCA 1247
Query 1209 GGCCAAACATTCTCCCACCAGCTCTGGCGCCGGCCACTAA 1248
|||||| | ||||||||||||||||||| ||||||| |||
Sbjct 1248 GGCCAACCGTTCTCCCACCAGCTCTGGCTCCGGCCAATAA 1287
Score = 93.5 bits (50), Expect = 3e-18
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAAATGGTTGGGATTTTCATTGACACCTCCTTTGAGAATCTGCAATAGTGAAGAA 60
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGAACAAATGGTTGGGGTTTTCATTGACACCTCCTTTGAGAATCTGTGATAGTGAAGAA 60
Query 61 GA 62
||
Sbjct 61 GA 62
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5