BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72580.1 Length=624 Score E Sequences producing significant alignments: (Bits) Value Ahg943339 jgi|Araly1|943339|scaffold_603883.1 355 2e-97 > Ahg943339 jgi|Araly1|943339|scaffold_603883.1 Length=337 Score = 355 bits (192), Expect = 2e-97 Identities = 280/319 (88%), Gaps = 19/319 (6%) Strand=Plus/Plus Query 72 GGCTTCTTATGAATCACAAAGAGATGTCGCTGAATTGGCGACCCTTGAACAAACTAAAAA 131 ||| ||||||||||||||||||||||| | ||||||||||||||||||||| || ||||| Sbjct 26 GGCCTCTTATGAATCACAAAGAGATGTTGTTGAATTGGCGACCCTTGAACAGACGAAAAA 85 Query 132 GA-ATGTGGAGG-ATGTCGAGGAGGTTCTAAAGAAACTCGAACAAACTTATTTGG-GGAA 188 | ||||||||| || | ||||||||||| |||||| | |||||||||||||||| || Sbjct 86 -ACATGTGGAGGAAT-TAGAGGAGGTTCTTAAGAAATTTGAACAAACTTATTTGGAAAAA 143 Query 189 GGAAAAAGTCACAGATGATACGCTTTTGAGTGACGAAGAAATGGAAAAGTTCAA-TCAGA 247 || ||||| | |||||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct 144 GG-AAAAGCCGCAGATGATACGCTTTTGAGTGATGAAGAAATGGAAAAGTT-AAGTCAGA 201 Query 248 TGATGAACTG-TGTAAAACTTCTGAACAATTGTTTGACAAAGATAGGACAGTCATTGCCG 306 |||||||| | ||| ||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 202 TGATGAAC-GTTGTGAAAGTTCTGAACAATTGTTCGACAAAGATAGGACAGTCATTGCCG 260 Query 307 CTAAAAGAAG--GA-GAAAGAGAATTAGTTGAAGTTGAAGTTGATTTCAAGAATATACCC 363 |||||||||| || |||||||||||| | ||||||||||||| || ||||||||| Sbjct 261 CTAAAAGAAGAAGAAGAAAGAGAATTA----A--TTGAAGTTGATTTGAATAATATACCC 314 Query 364 TAATTAAATGTTGAATCAT 382 |||||||||| |||||||| Sbjct 315 TAATTAAATGCTGAATCAT 333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22835627283 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5