BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72580.1
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943339 jgi|Araly1|943339|scaffold_603883.1 355 2e-97
> Ahg943339 jgi|Araly1|943339|scaffold_603883.1
Length=337
Score = 355 bits (192), Expect = 2e-97
Identities = 280/319 (88%), Gaps = 19/319 (6%)
Strand=Plus/Plus
Query 72 GGCTTCTTATGAATCACAAAGAGATGTCGCTGAATTGGCGACCCTTGAACAAACTAAAAA 131
||| ||||||||||||||||||||||| | ||||||||||||||||||||| || |||||
Sbjct 26 GGCCTCTTATGAATCACAAAGAGATGTTGTTGAATTGGCGACCCTTGAACAGACGAAAAA 85
Query 132 GA-ATGTGGAGG-ATGTCGAGGAGGTTCTAAAGAAACTCGAACAAACTTATTTGG-GGAA 188
| ||||||||| || | ||||||||||| |||||| | |||||||||||||||| ||
Sbjct 86 -ACATGTGGAGGAAT-TAGAGGAGGTTCTTAAGAAATTTGAACAAACTTATTTGGAAAAA 143
Query 189 GGAAAAAGTCACAGATGATACGCTTTTGAGTGACGAAGAAATGGAAAAGTTCAA-TCAGA 247
|| ||||| | |||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 144 GG-AAAAGCCGCAGATGATACGCTTTTGAGTGATGAAGAAATGGAAAAGTT-AAGTCAGA 201
Query 248 TGATGAACTG-TGTAAAACTTCTGAACAATTGTTTGACAAAGATAGGACAGTCATTGCCG 306
|||||||| | ||| ||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 202 TGATGAAC-GTTGTGAAAGTTCTGAACAATTGTTCGACAAAGATAGGACAGTCATTGCCG 260
Query 307 CTAAAAGAAG--GA-GAAAGAGAATTAGTTGAAGTTGAAGTTGATTTCAAGAATATACCC 363
|||||||||| || |||||||||||| | ||||||||||||| || |||||||||
Sbjct 261 CTAAAAGAAGAAGAAGAAAGAGAATTA----A--TTGAAGTTGATTTGAATAATATACCC 314
Query 364 TAATTAAATGTTGAATCAT 382
|||||||||| ||||||||
Sbjct 315 TAATTAAATGCTGAATCAT 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5