BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G72600.1

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926625 jgi|Araly1|926625|scaffold_202186.1                        409    2e-113
  Ahg480472 jgi|Araly1|480472|fgenesh2_kg.3__3173__AT1G72600.1         307    7e-83 


> Ahg926625 jgi|Araly1|926625|scaffold_202186.1
Length=422

 Score =  409 bits (221),  Expect = 2e-113
 Identities = 373/440 (85%), Gaps = 35/440 (8%)
 Strand=Plus/Plus

Query  136  AGATTTCTACCAATGGAACCTTCATCACAAAGTTCGAGActttttcttttctgcttcgtc  195
            ||| |||||  ||||||| |  ||| |||||||| ||||||||||||| |||||||||||
Sbjct  10   AGAGTTCTATTAATGGAAACGCCATTACAAAGTTTGAGACTTTTTCTTCTCTGCTTCGTC  69

Query  196  ttcttcttcatctctgcttctatcttcGTTGACTCAAAATCACAAGATTCTTCCTCAATT  255
            ||||||||||||||||||||||||||||| |||||| ||||||||||||||| | | |||
Sbjct  70   TTCTTCTTCATCTCTGCTTCTATCTTCGTCGACTCACAATCACAAGATTCTT-C-C-ATT  126

Query  256  ACTCCACCACCACCGCCTCCTCCACCGCCACTATCCTTATCTCCACCGCCGTCTCC-TAT  314
            ||||| || ||||| || |||   |||||| | | ||||  |||||||||| |||| | |
Sbjct  127  ACTCCTCCTCCACCACCGCCT---CCGCCA-T-T-CTTAAATCCACCGCCGCCTCCGT-T  179

Query  315  AACGGCT-ATTGAGAGTAACAAGGCGATTCACGAGAAACATCACCACCGAAGAAAGAAAT  373
            || || |  ||||||||||||||||||||||||||       |  | |||||||| ||||
Sbjct  180  AA-GGGTCGTTGAGAGTAACAAGGCGATTCACGAG-------A--AGCGAAGAAAAAAAT  229

Query  374  GGAGACAGAGAAGACACCATAAACATCCACCACCGCCTCCTCCGAAGAAGCAGAAGGTGA  433
            || |||||||||||||||||||||| |||||||||      ||   | |||||||| |||
Sbjct  230  GGCGACAGAGAAGACACCATAAACACCCACCACCG------CC---GCAGCAGAAGCTGA  280

Query  434  ACACAGGAAAGACGGTGGGGCTTTTCTTCGCCGGCGTAGCTGCAGCTTTGCAAGTAGTTG  493
            |||  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct  281  ACATGGGAAAGACGGTGGGGCTTTTCTTCGCCGGTGTAGATGCAGCTTTGCAAGTAGTTG  340

Query  494  TTGCTGCTTTCTTGATTTTCAAAAGAAGACAGCTTCTTCTTAAGATCAATGATAGACACT  553
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  341  TTGCTGCTTTCTTGATTTTCAAAAGAAGACAGCTTCTCCTTAAGATCAATGATAGACACT  400

Query  554  GAC--AGA--TTCCAAGCTT  569
            ||   |||  ||||||||||
Sbjct  401  GAGTGAGAGATTCCAAGCTT  420


> Ahg480472 jgi|Araly1|480472|fgenesh2_kg.3__3173__AT1G72600.1
Length=468

 Score =  307 bits (166),  Expect = 7e-83
 Identities = 190/202 (94%), Gaps = 0/202 (0%)
 Strand=Plus/Plus

Query  354  TCACCACCGAAGAAAGAAATGGAGACAGAGAAGACACCATAAACATCCACCACCGCCTCC  413
            ||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct  246  TCACCACCGAAGAAAAAAATGGCGACAGAGAAGACACCATAAACACCCACCACCGCCTCC  305

Query  414  TCCGAAGAAGCAGAAGGTGAACACAGGAAAGACGGTGGGGCTTTTCTTCGCCGGCGTAGC  473
            || |||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct  306  TCGGAAGAAGCGGAAGGTTAACACGGGAAAGACGGTGGGGCTTTTCTTCGCCGGTGTAGC  365

Query  474  TGCAGCTTTGCAAGTAGTTGTTGCTGCTTTCTTGATTTTCAAAAGAAGACAGCTTCTTCT  533
            ||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||
Sbjct  366  TGCAGCTTTGCAAGTAGTTGTAGCTGCTTTCTTGCTTTTCAAAAGAAGACAACTTCTCCT  425

Query  534  TAAGATCAATGATAGACACTGA  555
            ||||||||||||||||||||||
Sbjct  426  TAAGATCAATGATAGACACTGA  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28287204414


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5