BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72610.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476393 jgi|Araly1|476393|fgenesh2_kg.2__1523__AT1G72610.1 1273 0.0
> Ahg476393 jgi|Araly1|476393|fgenesh2_kg.2__1523__AT1G72610.1
Length=872
Score = 1273 bits (689), Expect = 0.0
Identities = 830/894 (93%), Gaps = 25/894 (3%)
Strand=Plus/Plus
Query 1 ACACAGTTTATCCCACACCTCTCTATATAAACACCCGAGACCGAGAGGAGTGAGAAGAGT 60
||||||||||||| |||||||||||||||||||| | || || | |||| || |||
Sbjct 1 ACACAGTTTATCCAACACCTCTCTATATAAACACTC--GA--GA-A-GAGT-AG-AGA-- 50
Query 61 AGGGAAAAAGAAAAGAAAAGTAGAGTACTATCTTCCTCTTAAACCAACCATTC-AAAATG 119
| |||||||||||||||| |||| | | | | ||||||||||| ||||| ||||||
Sbjct 51 A---AAAAAGAAAAGAAAAGAAGAG-AGT-TAGT--TCTTAAACCAATCATTCAAAAATG 103
Query 120 TTGCGTACTATCTTCCTCTTATCTCTTCTCTTTGCTCTATCCAATGCCTCTGTTCAAGAT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 ATGCGTACTATCTTCCTCTTATCTCTTCTCTTTGCTCTATCCAATGCCTCTGTTCAAGAT 163
Query 180 TTCTGTGTCGCAAACCTGAAACGCGCTGAAACCCCTGCGGGTTACCCTTGCATTCGTCCC 239
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 164 TTCTGTGTCGCAAACCTGAAACGCGCTGACACGCCTGCGGGTTACCCTTGCATTCGTCCC 223
Query 240 ATTCATGTCAAAGCTACAGACTTTGTCTTCTCTGGCTTAGGCACTCCTGGAAACACTACA 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 224 ATTCATGTCAAAGCTACAGACTTTGTCTTCTCTGGCTTAGGCACTCCCGGAAACACTACA 283
Query 300 AACATCATCAACGCCGCTGTCACACCCGCTTTCG-CAGCTCAGTTCCCGGGTCTGAACGG 358
|||||||||| |||||||||||| |||||||||| | ||||||||||| |||||||||||
Sbjct 284 AACATCATCAGCGCCGCTGTCACGCCCGCTTTCGTC-GCTCAGTTCCCAGGTCTGAACGG 342
Query 359 TCTAGGCCTCTCTACAGCTAGACTTGACTTAGCTCCTAAAGGTGTGATCCCAATGCACAC 418
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 343 TCTAGGCCTCTCTACAGCTAGACTTGACCTAGCTCCTAAAGGTGTGATCCCAATGCACAC 402
Query 419 TCACCCTGGTGCCTCTGAGGTTCTCTTTGTCCTT-ACTGGCTCCATTACCGCTGGGTTTG 477
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 403 TCACCCTGGTGCCTCTGAGGTTCTCTATGTCCTTGAC-GGCTCCATTACCGCTGGGTTTG 461
Query 478 TCTCCTCGGCAAACGCTGTCTACGTGCAGACACTCAAACCAGGACAGGTCATGGTTTTCC 537
||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 462 TCTCCTCTGCAAACGCTGTCTACGTGCAGACACTTAAACCAGGACAGGTCATGATTTTCC 521
Query 538 CACAGGGCTTGCTTCATTTCCAGATCAACGCGGGAAAATCCTCTGCTTCAGCCGTTGTCA 597
||||||| ||||| |||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct 522 CACAGGGATTGCTGCATTTCCAGATCAATGCAGGAAAATCCTCTGCAGCAGCCATTGTCA 581
Query 598 CTTTCAACAGCGCTAATCCGGGTCTGCAGATTCTCGACTTCGCACTCTTTGCTAACAGTC 657
| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 582 CATTCAACAGCGCTAGTCCGGGTCTGCAGATTCTCGATTTCGCACTCTTTGCTAACAATC 641
Query 658 TTCCCACTGAACTCGTCGTGGGTACTACTTTCCTTGACGCCACTACAGTCAAGAAGCTAA 717
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 642 TTCCCACTGAACTCGTTGTGGGTACTACTTTCCTTGACGCTACTACAGTCAAGAAGCTAA 701
Query 718 AGGGTGTTCTTGGAGGAACTGGCTaaaaaaaGACTTAGGACTACTCCTTGACTAAAACAC 777
||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||
Sbjct 702 AGGGTGTTCTTGGAGGAACCGGCTAAAAAAAGACTTAGGACT-C-C-TTGACTAAAACAC 758
Query 778 CAAAACCTGTTTCTTCATCtttttttCTCTTTAATTGATTCTTGTCTTCTCTGTTTTGTG 837
|||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 759 CAAAACCTGTTTCTTCTTCTTCTTTTCTCTTTGATTGATTCTTGTCTTCTCTGTTTTGTG 818
Query 838 TGCCTTGTAATTCTTCAAAACCTGTCAAAATTGTTACATTGTATGTGAGTTTTT 891
| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 819 TCCCGTGTAATTCTTCAAAACCTGTCAAAATGGTTACATTGTATGTGAGTTTTT 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5