BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72620.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908871 jgi|Araly1|908871|Al_scaffold_0002_1952 1480 0.0
> Ahg908871 jgi|Araly1|908871|Al_scaffold_0002_1952
Length=996
Score = 1480 bits (801), Expect = 0.0
Identities = 944/1011 (93%), Gaps = 18/1011 (2%)
Strand=Plus/Plus
Query 1 ATGGTGTCAATGAAAAGC-TTCGTTCATATTCTCCGTCGATACATCTCCATTGCAATCAC 59
|||| |||||||||| | || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGGCGTCAATGAAACTCGTT-GTTCATATTCTCCGTCGATACATCTCCATCGCAATAAC 59
Query 60 TCTCTTCTATAACCTCATTTGGTGTTTATTCGACAATTTCGATTACCCGATCCTAATCAA 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTCTTCTATAGCCTCATTTGGTGTTTATTCGACAATTTCGATTACCCGATCCTAATCAA 119
Query 120 GCTCGCTGATACATTCTTATCATTATATTTCCTAATCTTCTGCGATCTCCGTCCAATCAC 179
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 120 ACTCGCTGATACGTTCTTATCTTTATATTTCCTAATCTTCTGCGATCTCCGTCCAGTAAC 179
Query 180 CGTCGATTTAAACGATGGAGAAACCACATTACATTTCTGGATCTCCGGCCACCGTAAAAT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTCGATTTAAACGATGGAGAAACCACATTACATTTCTGGATCTCCGGCCACCGTAAAAC 239
Query 240 CAACCGCCCTAACCTCGTCATGTTACACGGCTACGGAGGAAATTCGAAATGGCAGTTCAT 299
||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||| || ||
Sbjct 240 CAACCGCCCAAACCTCCTCATGCTACACGGTTACGGAGGAAATTCGAAATGGCAATTTAT 299
Query 300 TCATCAAGTCTCAGATCTATCGAAATCGTTTAATCTCTTTATCCCTGATCTTGTGTTCTT 359
||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 300 TCATCAAGTTTCAGATCTATCGAAATCGTTTAATCTCTTTATCCCCGATCTCATGTTCTT 359
Query 360 CGGGAAATCGTACTCGAGAAACACCGATCGGA-CTATCGAGTTTCAGGCGAGGAGTATCG 418
||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||
Sbjct 360 CGGGAAATCGTACTCGAAAAATACCGATCGGAGC-GTCGAGTTTCAGGCGAGGAGTATCG 418
Query 419 TCGGAGGTTTGAAGAGGTTAGGTTGTGGTGACGGAGATTTATCGGTTTATTCAATTAGTT 478
|||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||
Sbjct 419 TCGGAGGTTTGAAGAGGTTAGGCTGTGGTGACGGAGATTTGTCGGTTTACTCTATTAGTT 478
Query 479 ACGGTGGATTTGTTGCGTACCGGATAGCGAAGATTTGGCCGGAGATGATTGAGAAATTGG 538
|||| ||||| || ||||| ||||| ||||||||||||||||||||| |||||||| |||
Sbjct 479 ACGGAGGATTCGTCGCGTATCGGATTGCGAAGATTTGGCCGGAGATGGTTGAGAAACTGG 538
Query 539 TGATTGTGAGTAGTGGAGTTGGGTTTACACAACAGCAAAAGATGACGGAGATGAAAAAAC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGATTGTGAGTAGTGGAGTTGGGTTTACACAACAGCAAAAGATGACGGAGATGAAAAAAC 598
Query 599 ACGGCGGAGATGTATCGGAGATTCTTGTTCCGAGTAATCCGAGAGATCTACGGTTGTTAG 658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 ACGGCGGAGATGTATCGGAGATTCTTGTTCCGAGTAATCCGAGAGATCTCCGGTTGTTAG 658
Query 659 TTAAGGTTTCGATGAATACAGGTATCAGATTTCTTGACTGGGTTCCAGATTTCATCCTCT 718
||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 659 TTAGGGTTTCGATGAATACAGGTATCAGGTTTCTTGACTGTGTTCCAGATTTCATCCTCT 718
Query 719 CCCAATTCATCGCTGTGATGTATGAGACAAATCGGCAAGAGCTTGTTGATTTAGCTAAGA 778
|||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 719 CCCAATTCATCGCT---A---------CAAATCGGCAAGAACTTGTTGATTTAGCTAAGA 766
Query 779 ATTTGCTGGAAAGAGAAGAGGAGCCAGAGTTATTTT-CAATATCACAGAGAACGTTAATC 837
|||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||
Sbjct 767 ATTTGCTGGAAAGAGAAGAGGAGCCAGATTT-TTTTGCAATATCACAGAAAACGTTAATC 825
Query 838 GTTTGGGGTGATAAGGATAATGTGTTTCCGTTGGAGCATGGACGTCGTCTACAAAGGCAT 897
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 826 GTTTGGGGTGATAAGGATAATGTGTTTCCCTTGGAGCATGGACGGCGTCTTCAAAGGCAT 885
Query 898 TTGCCGAATTCGAGTTTAGAGGTATTGAAGGAAATTGGACATGGTGTGAACATTGAAGCA 957
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TTGCCAAATTCGAGTTTAGAGGTATTGAAGGAAATTGGACATGGTGTGAACATTGAAGCA 945
Query 958 CCAACTACTCTTAACAATTTGATTATCTCGTTTGTTTTAGGTGTTCCTTAA 1008
|||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 946 CCAACTACTCTTAATAATTTGATTATCTCGTTTGTTTTAGGTGCTCCTTAA 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5