BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72630.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339481 jgi|Araly1|339481|fgenesh1_pg.C_scaffold_2001580 553 9e-157
Ahg471952 jgi|Araly1|471952|fgenesh2_kg.1__1906__AT1G17455.1 329 2e-89
> Ahg339481 jgi|Araly1|339481|fgenesh1_pg.C_scaffold_2001580
Length=426
Score = 553 bits (299), Expect = 9e-157
Identities = 329/344 (96%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 320 ATGGAAGGAGATGTGTATTCTGGATTTGGAGAGAGATACCAAATGGATGGTAAGTTGTTG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAAGGAGATGTGTATTCTGGATTTGGAGAGAGATACCAAATGGATGGTAAATTGTTG 60
Query 380 CAGAATTTCCAGAAGAGCTTTGTTCAAGTTCAAGACATTCTTGATCAGAACCGGCTTTTG 439
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CAGAATTTCCAGAAGAGCTTTGTTCAAGTTCAAGACATTCTTGATCAAAACCGGCTTTTG 120
Query 440 ATCAACGAGATCAATCAGAACCATGAGTCGAAACAAGCTGATCACTTGGGAAGAAATGTT 499
||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 121 ATCAACGAGATCAATCAGAACCACGAGTCCAAACAAGCTGATAACTTGGGAAGAAATGTG 180
Query 500 GGTTTGATAAGAGAGCTCAATAACAATATCAGAACTGTTGCAAGTCTTTATGGAGATCTC 559
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 181 GGTTTGATAAGAGAGCTCAATAACAATATCAGAACAGTGGCAAGTCTTTATGGAGATCTC 240
Query 560 TCTCATTCTTTTGCTAGATCGGTTGATGCTTCATCGGAAGGCGAATCTACCGGGACATTG 619
||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||||||||||
Sbjct 241 TCTCATTCTTTCGCTAGATCGATCGATGCTTCATCTGAAGGGGAATCTACCGGGACATTG 300
Query 620 AAATCTGACGGTAAGGCCAACAACCAGAAGAGATTTAGATCCGG 663
|||||||| || ||||||||||||||||||||||||||||||||
Sbjct 301 AAATCTGATGGCAAGGCCAACAACCAGAAGAGATTTAGATCCGG 344
> Ahg471952 jgi|Araly1|471952|fgenesh2_kg.1__1906__AT1G17455.1
Length=747
Score = 329 bits (178), Expect = 2e-89
Identities = 301/359 (84%), Gaps = 13/359 (4%)
Strand=Plus/Plus
Query 317 AGAATGGAAGGAGATGTGTAT-TCTGGATTTGGAGAGAGATACCAA-ATGGATGGTAAGT 374
||||||||||| ||||||| | || ||||||||||| ||| | ||| |||||||| || |
Sbjct 240 AGAATGGAAGGCGATGTGT-TGTCAGGATTTGGAGACAGACA-CAATATGGATGGGAAAT 297
Query 375 TGTTGCAGAATTTCCAGAAGAGCTTTGTTCAAGTTCAAGACATTCTT-GATCAGAACCGG 433
||||||||| |||||||||||||||||| | |||||||||||| || || || |||| |
Sbjct 298 TGTTGCAGAGTTTCCAGAAGAGCTTTGTGGATGTTCAAGACATT-TTGGACCAAAACC-G 355
Query 434 CTT-TTGATCAACGAGATCAATCAGAACCATGAGTCGAAACAAGCTGATCACTTGGGAAG 492
|| ||||||||||||||||||||||||||||| ||||||||| | ||| ||||||| |
Sbjct 356 ATTATTGATCAACGAGATCAATCAGAACCATGAATCGAAACAACCCGATAACTTGGGTCG 415
Query 493 AAATGTTGGTTTGAT-AAGAGAGCTCAATAACAATATCAGAACTGTTGCAAGTCTTTATG 551
||| || || ||||| || ||||||||| ||||||||||||| || || || ||||| |
Sbjct 416 AAACGTGGGGTTGATCAA-AGAGCTCAACAACAATATCAGAAGAGTAGCTAGCCTTTACG 474
Query 552 GAGATCTCTCTCATTCTTTTGCTAGATCGGTTGATGCTTCATCGGAAGGCGAATCTACCG 611
| |||||||||||||||||||| ||||| || ||||||||||| ||||| ||||||| |
Sbjct 475 GTGATCTCTCTCATTCTTTTGCAAGATCAGTGGATGCTTCATCAGAAGGTGAATCTAGTG 534
Query 612 GGACATTGAAATCTGACGGTAAGGCCAACAACCAGAAGAGATTTAGATCCGGGTAATAT 670
| || ||||||||||| || || || ||| | ||||||||||||||||||| || |||
Sbjct 535 GAACTTTGAAATCTGATGGGAAAGCTAAC--C-AGAAGAGATTTAGATCCGGTTAGTAT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5