BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72640.1
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476397 jgi|Araly1|476397|fgenesh2_kg.2__1527__AT1G72640.1 1640 0.0
> Ahg476397 jgi|Araly1|476397|fgenesh2_kg.2__1527__AT1G72640.1
Length=1053
Score = 1640 bits (888), Expect = 0.0
Identities = 1015/1073 (95%), Gaps = 22/1073 (2%)
Strand=Plus/Plus
Query 1 ATCCCGGTTTAGAGAAACCTCTTTCTCATCTAGAGGGTTACTGTGAACTGTTGAGAGATT 60
||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 1 ATCCCGGTTTAGAGAAACCTCTTTCTCATCTAGAGGGTTACAGTGAACTCTTGGGAGA-- 58
Query 61 TACAGTAGAAGCAAGGTGAGGACGAAACCTTATCTTTGTGGTTGCAGACATGGCGGGTAC 120
| | |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 59 T----T---------GTGAGGACGAAACCTTATCTTTGTAGTTGCAGACATGGTGGGTAC 105
Query 121 TTCTCTACCTTCGTGTCTCCTCAGTCAAGGACCTTCGTTACTCTTCTCTTCTTCGAATCA 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 106 TTCTCTACCTTCGTGTCTCCTCAGTCAAGGACCTTCGTTACTCTTCTGTTCTTCGAATCA 165
Query 181 GGACTCAGAAGCTAATAAATGTCGAATTGGGATAACATCTGGAAAACGTTGTCTTGTTCG 240
|| ||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 166 GGTCTCAGAA---ACTAAATGTCGAATTGCGATAACATCTGGAAAACGTTGTCGTGTTCG 222
Query 241 TTGTTTCGCTAAGAAGAAAATCAGTTTTGTGGATCAGATTCTCGATTATATCGAAGGCGG 300
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 223 TTGTTTCGCTAAGAAGAAAATCAGCTTTGTAGATCAGATTCTCGATTATATCGAAGGCGG 282
Query 301 TCCCAAGCTTAGGAAATGGTATGGAGCTCCTGAACTTCGGCCAAAGGATGGATCTTTAAG 360
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 283 TCCAAAGCTTAGGAAATGGTATGGAGCGCCTGAACTTCGGCCAAAAGATGGATCTTTAAG 342
Query 361 TGGAGACGACGATGAATTTGAAGCAGAGGAA-AAAGAAGATGATCTTGATGGAGAGAAA- 418
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct 343 TGGAGACGACGATGAATTTGAAGCAGAGGAAGCAA-AAGATGATCTTGATGGAGA-AAAT 400
Query 419 GACGTTGTTTTTGTAACTGATGGAGACAGTGATTTGGGTCAGATGATTATACTGCAACTG 478
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GACGTTGTTTTTGTAACGGATGGAGACAGTGATTTGGGTCAGATGATTATACTGCAACTG 460
Query 479 ATTGTGAAAGGAACTCGGGTTAAAGCACTTGTGAAGGACAAAAGAAAGGCTTTGGAAGCT 538
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 ATTGTGAAAGGGACTCGAGTTAAAGCACTTGTGAAGGACAAAAGAAAGGCTTTGGAAGCT 520
Query 539 TTTGGATCTTATGTTGAGTTGACGACTGGAGATGCAAGCGACGAGCGTTTCTTAAAGAAA 598
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 521 TTTGGATCTTATGTTGAGTTGACGTCTGGAGATGCAAGCGACGAGCGTTTCTTAAAGAAA 580
Query 599 GCTTTTAAGGGTGTTGGTGCGGTCATATCCCCGACAGAAGGTTTCTTATCGATTGTCAAG 658
||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 581 GCTTTTAAGGGCGTTGGTGCGGTCATATCCCCGACTGAAGGTTTCTTATCGAATGTCAAG 640
Query 659 AGTTTTAGAGGTGTAAAACACGCAGTTCTCTTGTCTCAGTTGTCTGTTTATGAAAGCAGC 718
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 641 AGTTTAAGAGGTGTAAAACATGCAGTTCTCTTGTCTCAGTTGTCTGTTTATGAAAGCAGC 700
Query 719 GGCGGAATTCAAGCTATGATGAATAGCAAAGCCAAAAAACTGGCCGAGCAAGATGAAAAC 778
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 701 GGCGGAATTCAAGCTATGATGAATAACAAAGCCAAAAAACTGGCTGAGCAAGATGAAAAC 760
Query 779 GCCGCTATATCTTCAAATGTCCCTTATACAATCATAAGAACAGGCAAGCTGGAGAACAGT 838
||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 761 ACCGTTATATCTTCGAATGTCCCCTATACAATCATAAGAACAGGCAAGCTGGAGAACAGT 820
Query 839 CCTGGAGGGAGTCAAGGCTTCAACTTTAGCGCGGGTGCTGCAGCCAAAGGAAGCATAAGC 898
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CCTGGAGGGAATCAAGGCTTCAACTTTAGCGCGGGTGCTGCAGCCAAAGGAAGCATAAGC 880
Query 899 AAGGAAGATGCTGCTCGTATATGTGTTGAAGCACTAAGTGTGATCCCACCAACAGGGTTG 958
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 881 AAGGAAGATGCTGCTCGTATATGTGTTGAAGCGTTAAGTGTGATCCCACCAACAGGGTTG 940
Query 959 ATATTTGAGGTTACGAATGGAGAAGAGGTTGTATCTGACTGGGAAGGACAATTGATGAAA 1018
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 941 ATATTTGAGGTTACGAATGGAGAAGAAGTTGTATCTGACTGGGAAGGACAGTTGATGAAA 1000
Query 1019 GTGATGCAGAGACAGAGTGACAAGAAGTAAGCTTCAAAGCTGAGATGAACAGA 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 GTGATGCAGAGACAGAGTGACAAGAAGTAAGCTTCAAAGCTGAGATGAACAGA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41287119111
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5