BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G72645.1

Length=839
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476398 jgi|Araly1|476398|fgenesh2_kg.2__1528__AT1G72645.1         237    1e-61


> Ahg476398 jgi|Araly1|476398|fgenesh2_kg.2__1528__AT1G72645.1
Length=615

 Score =  237 bits (128),  Expect = 1e-61
 Identities = 163/179 (91%), Gaps = 5/179 (3%)
 Strand=Plus/Plus

Query  565  TAATGGTTTTGTGTTTAGtttttttctttttCCTTTCAAGTTTCCATTGTTGCAGGAGAA  624
            |||||| ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||
Sbjct  381  TAATGGGTTTGTGTTTAGATTTTTTC-TTTTCTTTTCAAGTCTCCATTGTTGCAGGAGAA  439

Query  625  ACAGGTCTACTCA-GACATGCAACTTCCATTC-ATGATGCAGCAAAATGATCATTGTTGC  682
            ||||||||||||| | |||||||||||||||| |||||||||||||| |||| |||||||
Sbjct  440  ACAGGTCTACTCATG-CATGCAACTTCCATTCCATGATGCAGCAAAAGGATCGTTGTTGC  498

Query  683  AAGAGAAGAGAAGTCCACAATGATGT-CTCAAGGATCAAGGACATTATTTAGCAACAAA  740
            ||||||||| ||||||||||||| || || |||||||||||||||| |||| |||||||
Sbjct  499  AAGAGAAGAAAAGTCCACAATGAGGTTCTGAAGGATCAAGGACATTGTTTACCAACAAA  557


 Score =  231 bits (125),  Expect = 5e-60
 Identities = 160/175 (91%), Gaps = 9/175 (5%)
 Strand=Plus/Plus

Query  303  TTTTGATGGTATAAGAGGATTCAGTGACAATGCTTATATTAAAAATGGAGTTTATAGTCT  362
            |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  174  TTTTGATGGTATAAGAGGATCCAATGACAATGCTTATATTAAAAATGGAGTTTATAGTCT  233

Query  363  CTCTGAACTATCTATGTCCAAGTTCTTGGGAGTTCGGAAGCACCTTACATCGTTGACATT  422
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  234  CTCTGAACTATCTATTTCCAAGTTCTTGGGAGTTCGGAAGCACCTTACATCGGCGACATT  293

Query  423  TGTTCTA--------A-GTTTTCCTATGACAATTCTTTTCGTTTGCACATTCAGA  468
            |||||||        | ||||||||||||||||||||||||||||||||| ||||
Sbjct  294  TGTTCTACTCTTTCTAAGTTTTCCTATGACAATTCTTTTCGTTTGCACATGCAGA  348


 Score =  113 bits (61),  Expect = 2e-24
 Identities = 141/176 (80%), Gaps = 19/176 (11%)
 Strand=Plus/Plus

Query  42   ttttGTGT-TATC-TTCTATGAGTCTCTTTATTCATAGATGTTTTCGTTTGATTATATAT  99
            |||||| | | || |||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct  12   TTTTGT-TCTCTCTTTCTATGAGTCTCTTTATTCATAGATGTATTCGTTTGATTCTATCT  70

Query  100  ACCTTAGTCATGTTATCTATTTA-TGATGTAGCT-CGTTCTTACTTGA-GATTGCA-CTA  155
            |   || | ||  || |   ||| |||| ||| |  ||| | | || | || || | || 
Sbjct  71   A---TA-T-AT-ATA-C--CTTACTGAT-TAGTTATGTTATGAATTTATGA-TGTAGCTT  119

Query  156  GTAGTCTTGCTTAATGACATATAAATCTTGATTTAAACTCCCTCTGGATATTCTTT  211
            ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  GT-TTCTTGCTTATTGACATATAAATCTTGATTTAAACTCCCTCTGGATATTCTTT  174



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31032054438


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5