BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72650.2
Length=2419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476400 jgi|Araly1|476400|fgenesh2_kg.2__1530__AT1G72650.2 3469 0.0
> Ahg476400 jgi|Araly1|476400|fgenesh2_kg.2__1530__AT1G72650.2
Length=2391
Score = 3469 bits (1878), Expect = 0.0
Identities = 2238/2409 (93%), Gaps = 36/2409 (1%)
Strand=Plus/Plus
Query 16 aaaaaaaaaaGCCTAAAGGGAGCCAAACAT-AAAAGCAGTACCAAAAATTTCCACTTTTC 74
||||| |||||||||||| ||||||||||| |||||||||||||||| |||||| ||||
Sbjct 1 AAAAAGAAAAGCCTAAAGAGAGCCAAACATAAAAAGCAGTACCAAAATTTTCCAAATTTC 60
Query 75 -TTTAACCTTTTTTGCTTGTCTAAGAAACTTCTCCTCTGAAATCATCGTAGATTAATCTG 133
||||||| ||||||||| |||||||| ||||| ||||||||||||| |||||||||
Sbjct 61 TTTTAACCCTTTTTGCTTATCTAAGAAGTTTCTCGTCTGAAATCATCGAAGATTAATC-- 118
Query 134 TTTTCTTAGACATGA-TTAAGTCTCCGACGCTTTGAGGTAACCGGAAAGTGTAATCAATC 192
| |||||||| |||| || ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 119 TATTCTTAGATATGACTT-TGTCTCCGACGCTTTGAGGTCACCTGAAAGTGTAATCAATC 177
Query 193 GCTTGT-TGCTGTATTTGTCACTCTCCGGCGACAAAACTTGATTTCCGGTGAT-AGTGTG 250
|||| | |||| || |||||||||||||||||||||||||| ||||||||| | || |
Sbjct 178 GCTTTTCTGCTATAATTGTCACTCTCCGGCGACAAAACTTGGTTTCCGGTGGTAAGCAT- 236
Query 251 TTCCTAAGTTAGATTTGCGATGGGAACTGTGGTTGGAACTGTTGAGGACCGCAGAGATAT 310
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTTTTAAGTTGGATTTGCGATGGGAACTGTGGTTGGAACTGTTGAGGACCGCAGAGATAT 296
Query 311 GTTTGAGGGCAATGCTCAGACAAGGATCACACCATTTTCTTCAACAAATCAGATTGGAAA 370
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 297 GTTTGAGGGCAGTGCTCAGACAAGGATCACACCGTTTTCTTCAACAAATCAGATTGGAAA 356
Query 371 TCCTGTTGCCTACAAGCTTGTCCGGGTTTCAGGAGATGGGAGTCTAGTGCCTGCAACCGA 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCCTGTTGCCTACAAGCTTGTCCGGGTTTCAGGAGATGGGAGTCTAGTGCCTGCAACCGA 416
Query 431 TGAAGAAATTTTGGAAGTCAATGACACCGATATGCATATTCCATCAGATACTTGTCAGAC 490
||||||||||||||| |||||||| || |||||||||||| |||||||| | ||||||||
Sbjct 417 TGAAGAAATTTTGGAGGTCAATGAGACGGATATGCATATTGCATCAGATGCATGTCAGAC 476
Query 491 TATAGGCTACCTTGCAACCGATGAAGAAAATGT-GGAGGTCGATGAGACGGATATGCATA 549
| ||||||||||||||||||||||||||||| | |||| || ||||||||| ||||||||
Sbjct 477 TGTAGGCTACCTTGCAACCGATGAAGAAAAT-TCGGAGATCAATGAGACGGTTATGCATA 535
Query 550 TTGCATCAGATGCTTGTCAGACTATAGGTTACCTTCCAGCTGAAGGGATACCTTCTCGGT 609
||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 536 TTGCATCAGATGCTTGTCAGACTGTAGGCTACCTTCCAGCTGAAGTGATACCTTCTCGGT 595
Query 610 TGTCCCAGATTGAAAGTTCAGAAGCTATCAATTCAGGTTTATTGCATTCTGATAATGTGC 669
|||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 596 TGTCCCAGCTTGAAAGTTCAGAAGCTATCAATTCAGGTTTATTGCAGTATGATAATGTGC 655
Query 670 AACCATATACAGACCAGGTAAAGTCTCGATCTGAGTATAACGAGGAGATGTTGCAAAAGG 729
||||||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||
Sbjct 656 AACCATATACAGACCAGGTAAAGTCTCCACCTGAGTATAATGAGAAGATGTTGCAAAAGG 715
Query 730 TTGAACAGGAAGAGAGGCTTGAG-AATGTACATGGATCTCAGATGCCTTCCACTCCTGCA 788
||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||
Sbjct 716 TTGAACAGGAAGAGAGGCTTG-GCAATGTACATGGATCTCAGATGCCTTCTACTCCTCCA 774
Query 789 GATGCCAATATCCAGTGTTCTAATGAAAACAACTTTTTTGAGGAGGATCAAGTCCACCAT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GATGCCAATATCCAGTGTTCTAATGAAAACAACTTTTTTGAGGAGGATCAAGTCCACCAT 834
Query 849 GAAGCTTTACTGCAGGATGAATGCAAGATGAATGAATCTGATATGATGGAACGATGCTCA 908
|||| ||| ||||| |||||||||| |||||| ||||||||| ||| |||| |||||||
Sbjct 835 GAAGATTTGCTGCAAAATGAATGCAATATGAATCAATCTGATAAGATTGAACCATGCTCA 894
Query 909 AACGCAGTTGCTAGTCCAAAAGAAACTGCATTGTCTGCTGCTGCTCAAAAACCTGATTTT 968
||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 895 AACGCAGCAGCTAGTCCCAAAGAAACTACATTGTCTGCTGCTGCTCAAAAACCTGATTTT 954
Query 969 TCTAGAGTTAGAGGTGAGATCTGCTTGGATAATTTACCGATTAAAGCACTGCAAGAAACA 1028
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TCTAGAGTTAGAGGCGAGATCTGCTTGGATAATTTACCGATTAAAGCACTGCAAGAAACA 1014
Query 1029 TTCAGGGCAACTTTTGGCCGTGATACGACTGTTAAGGACAAGACGTGGCTTAAAAGGAGG 1088
|||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1015 TTCAGGGCTACGTTTGGCCGTGAGACGACTGTTAAGGACAAGACGTGGCTCAAAAGGAGG 1074
Query 1089 ATTGCAATGGGACTTATTAATTCTTGTGATGTACCAACAACTAACTTGAGGGTGAAAGAT 1148
|||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||
Sbjct 1075 ATTGCAATGGGACTTATTAATTCTTGTGATGTACCAGCAACTAACCTGAGAGTGAAGGAT 1134
Query 1149 AACAA-GTTAATTGGAAATCAAGAGAAGTCCAACGATGTGACGAATGCCATTAGAAAGGA 1207
|| || |||| |||||||||||||||||||||| |||||||| ||||||||||| || ||
Sbjct 1135 AA-AATGTTAGTTGGAAATCAAGAGAAGTCCAATGATGTGACTAATGCCATTAGCAATGA 1193
Query 1208 GATGGGAGATGACGTAAGAGCTACTAAAATGAAAGATGCTCCATCGAGTACTGATCATGT 1267
||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1194 TATGGGTGATGACGTAAGAGCTACTAAAGTGAAAGATGCACCATCGAGTACTGATCATGT 1253
Query 1268 GAATGGACATTCAAACGGTGGCAACCACTATTACGCTAGTGAGGATTATTCCAGTGAACA 1327
||| ||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||
Sbjct 1254 GAAGGGACATTCAAACGGTGGTGACCACTATTATGCTAGTGATGATTATTCCAATGAACA 1313
Query 1328 GAGGGCTGCAAAACGAGTTAGGAAGCCTACACGAAGATACATTGAAGAACTTTCGGAAAC 1387
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1314 GAGGGCTGCAAAACGAGTTAGGAAGCCTACACGAAGATACATTGAAGAACTTTCAGAAAC 1373
Query 1388 AGATGATAAACAGCAAAATGACAAGTCAGTGATTCCTTCTAAAGATCAGAGGTTGTCCGA 1447
|||||| |||||||||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 1374 AGATGAAAAACAGCAAAATGAGAAGTCAATGATTCCTTCTAAAGATCAGAGGCTGTCCGA 1433
Query 1448 AAAATCTGAGGTCAGGTCTATCAGTGTCTCCTCAGGGAAGAGAGTTACTGTCACCAGGAT 1507
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1434 AAAATCTGAGGTCAGGTCTATCAGTGTCTCCTCGGGGAAGAGAGTTACCGTCACCAGGAT 1493
Query 1508 GGTATCCCTTGCTGGATCTGAAATTGAGGTTCCTTATGTTTCTCATGTCCGGAGAAGCCG 1567
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GGTATCCCTTGCTGGATCTGAGATTGAGGTTCCTTATGTTTCTCATGTCCGGAGAAGCCG 1553
Query 1568 TCCAAGAGAGAACATTATGGCTCTTTTGGGATGTCATTCCAGTTACTTGGAAGATAAAGC 1627
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1554 CCCAAGAGAGAACATTATGGCTCTTATGGGATGTCATTCCAGTTGCTTGGAAGATAAAGC 1613
Query 1628 TAGTGCAGCAGAGAGTAACCTCAATCTGAGTCCATCCCAGTTAAGCAGTGAGGTTGTGAA 1687
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1614 TAGTGCAACAGAGAGTAACCTCAATCTGAGTCCATCTCAGTTAAGCAGTGAGGTTGTGAA 1673
Query 1688 CCGAGATTCGGTGGAAAAGTCTGCTTCTCGACCGGTCCAAAACGAATTTGCTACAAGTGA 1747
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1674 CCGAGATTCGGTGGAAAATTCTGCTTCTCGACCGGTCCAAAAAGAATTTGCTACAAGTGA 1733
Query 1748 CGAGAACAATGTGGAGCATATTCTCTCTGAGGTTGATCAAGAGATGGAGCCAGAGCACAT 1807
||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1734 CGATAACAATGAGGAGCATATTGTCTCTGAGGTTGATCAAGACATGGAGCCAGAGCACAT 1793
Query 1808 AGACTCATCTGGAAATAGCTCGGATGAGAATAA---CATTGGTGTGCCAATCATGCAAGG 1864
||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 1794 AGACTCATCTGGAAATAGCTCGGATGACAATAATAACATTGGCGTGCCAATCATGCAAGG 1853
Query 1865 TGGTGCGCTTAGAAGGAAGCATCATCGAGCTTGGACTCTGTCTGAGAT-AGCAAAACTAG 1923
|||| | ||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1854 TGGTACACTTAGAAGGAAGCATCATCGAGCTTGGACTCTGTCTGAGGTTA-CAAAACTAG 1912
Query 1924 TTGAGGGTGTATCAAAATATGGAGCCGGGAAGTGGTCTGAAATCAAAAAGCATTTGTTTT 1983
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1913 TTGAAGGTGTATCAAAATATGGAGCCGGGAAGTGGTCTGAAATCAAAAAGCATTCCTTTT 1972
Query 1984 CATCACACTCCTATCGTACCTCTGTAGATCTCAAGGACAAATGGCGAAACCTTTTGAAGA 2043
||||| |||| ||||| |||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 1973 CATCATACTCATATCGGACCTCTGTAGATCTCAAGGACAAATGGCGAAATCTTCTGAA-A 2031
Query 2044 -CAAGCTTTGCTCAGAGTCCCTCAAACAGCGTGGGAAGTCTCAAGAAACATGGGTCGATG 2102
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||
Sbjct 2032 TCAAGCTTTGCTCAGAGTCCCTCACACAGCACGGGAAATCTCAAGAAACATGGGTCAATG 2091
Query 2103 CATATTCCTACGCAGATTCTGTTACGGGTAAGGGAGCTTGCGGAGAAGCAATCTCAGTAA 2162
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2092 CATATTCCTACGCAGATTCTGTTAAGGGTAAGGGAGCTCGCGGAGAAGCAATCTCAGTAA 2151
Query 2163 GCAAGTTTGTTGGAGATAGCAACAGAAAGGAAATGGAAACAAGGTCCGACTTCTTGTAGC 2222
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 2152 GCAAGTTTGTTGGAGATAGCAACAGAAAGGAAAAGGAAACAAGATCCGACTTCTAGTAGC 2211
Query 2223 TGAGttttttttGTAAAATAGCAACTCAAGTAAGGGAGACGAGAAATGTGAGATAAGATA 2282
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212 TGAGTTTTT---GTAAAATAGCAACTCAAGTAAGGGAGACGAGAAATGTGAGATAA---- 2264
Query 2283 ACAGTTTCTGTAGTAGACTTGTAACTTTCTAAGGAGGCTTTGTGGGTTATATATATTTAT 2342
|||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2265 -CAGTTTCT-T--TAGACTTGTAACTTTCTAAGGAAGCTTTGTGGGTTATATATAT--AT 2318
Query 2343 GAGAAAAGTATTAAGTAGTGTCTGTGTCCTGAATTGGTATGAATGA-TTCTCTATAATAT 2401
|||||||||| |||| |||||||||||| ||||||||||| |||| |||||||||||||
Sbjct 2319 GAGAAAAGTACTAAGCAGTGTCTGTGTCTTGAATTGGTATCAATGGGTTCTCTATAATAT 2378
Query 2402 CCATGGAAG 2410
|||||||||
Sbjct 2379 CCATGGAAG 2387
Score = 119 bits (64), Expect = 1e-25
Identities = 76/82 (93%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 503 TGCAACCGATGAAGAAAATGTGGAGGTCGATGAGACGGATATGCATATTGCATCAGATGC 562
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 408 TGCAACCGATGAAGAAATTTTGGAGGTCAATGAGACGGATATGCATATTGCATCAGATGC 467
Query 563 TTGTCAGACTATAGGTTACCTT 584
||||||||| |||| ||||||
Sbjct 468 ATGTCAGACTGTAGGCTACCTT 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91149956285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5