BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72670.1 Length=1656 Score E Sequences producing significant alignments: (Bits) Value Ahg476404 jgi|Araly1|476404|fgenesh2_kg.2__1534__AT1G72670.1 2556 0.0 > Ahg476404 jgi|Araly1|476404|fgenesh2_kg.2__1534__AT1G72670.1 Length=1646 Score = 2556 bits (1384), Expect = 0.0 Identities = 1568/1657 (95%), Gaps = 12/1657 (1%) Strand=Plus/Plus Query 1 ATCATTCTTCAGGCCACCAAAGTTCCCAGAAActttctctttcttcttcttctccttctt 60 ||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||| Sbjct 1 ATCATTCTTCAGGCCACCAAAATTCCCAGAAACTTTCTCTCTCTTTTTCTTCTTCTTCTT 60 Query 61 cttctctctcGAGtttttttACAAATATATTCTCGAACCCACCTTTCTCCGCCGGATCTG 120 | | |||||||| |||||||| ||| ||||||||| | |||||||||||||||||||| Sbjct 61 C--CCCTCTCGAGATTTTTTACTTATAAATTCTCGAATCGACCTTTCTCCGCCGGATCTG 118 Query 121 ATTCCAAAACCTGTGAAAGTCTCCAGCTTTACTACAGATTTTTGAAGAACAACAAAAGGG 180 ||||||||||||||||||||||||| ||||| |||||| |||||||| ||| ||| || Sbjct 119 ATTCCAAAACCTGTGAAAGTCTCCAACTTTATTACAGA-TTTTGAAG---AAC-AAA-GG 172 Query 181 TTTCAAATTTGAGCAAATGGGTGGCTCTGGAAATTGGATTAAATCTCTGATAACTAACaa 240 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 173 TTTCAAATTTGAGCAAATGGGTGGCTCTGGGAATTGGATTAAATCTCTGATAACTAACAA 232 Query 241 aaaaaaCATCACTGATGATCAAGAGAAGAACATCAAGAAGAAATGGAAACTATGGAGGAC 300 |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 233 AAAACCCATCACTGATGATCAAGAGAAGAATATCAAGAAGAAATGGAAACTATGGAGGAC 292 Query 301 TTCATCGGAAGGTTTGATTTCTTCCTCAAAGGGTTTCAAGAGCCGTGGTGGTAGTTATGG 360 |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct 293 TTCATCAGAAGGTTTAATTTCTTCCTCAAAAGGTTTCAAGAGCCGTGGTGGTAGTTACGG 352 Query 361 AACTCCTTCGTTAGGCTCAGATCCGCCGTCATTCTCTGCTGACGACTCTTTCACGGCGGC 420 |||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||| Sbjct 353 AACTCCTTCGTTGGGTTCAGATCCGCCGTCTTTCTCTGCTGACGAGTCTTTCACGGCGGC 412 Query 421 TGTTGCTGCTGTCATTAGAGCTCCGCCGAAAGATTTCTTTCTTGTTAAACGTGAATGGGC 480 ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 413 TGTTGCTGCAGTCATCAGAGCTCCGCCGAAAGATTTCTTTCTTGTTAAACGAGAATGGGC 472 Query 481 TGCTACACGGATTCAAGCTGCTTTTCGAGCTTTCCTGGCAAGACAAGCGCTGAGAGCTCT 540 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 473 TGCTACACGGATTCAGGCTGCTTTTCGAGCTTTCCTGGCAAGACAAGCGCTGAGAGCTTT 532 Query 541 GAAGGCCGTAGTGAGGATTCAGGCAATATTCCGTGGGAGACAAGTCCGGAAACAAGCAGA 600 |||||| || |||||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct 533 GAAGGCAGTGGTGAGGATTCAGGCGATATTCCGTGGCAGGCAAGTCCGGAAACAAGCAGA 592 Query 601 TGTCACCCTAAGGTGTATGCAAGCTCTTGTACGAGTCCAAGCTCGGGTACGAGCTCATTG 660 ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 593 TGTGACACTAAGGTGTATGCAAGCTCTTGTTCGAGTCCAAGCTCGGGTACGAGCTCATTG 652 Query 661 TAACAGGGGGCCTTCAGATGGACAGGAGTTGGAGAAGCCATCTGATCAACAAAAAGATGA 720 || ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| Sbjct 653 CAATAGGGGGCCTTCAGATGGACTGGACTTGCAGAAGCCATCTGATCAACAAAAAGATGA 712 Query 721 TCCGGCAAAACAGGCTGAGAAGGGTTGGTGTGATAGCCCGGGAAGTATCAATGAAGTGAG 780 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 713 TCCGGCCAAACAGGCTGAGAAGGGTTGGTGTGATAGCCCGGGAAGTATAAATGAAGTGAG 772 Query 781 AACGAAGCTACAAATGAGGCAAGAAGGAGCAATCAAGAGGGAGAGAGCTATGGTATATGC 840 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 AACAAAGCTACAAATGAGGCAAGAAGGAGCAATCAAGAGGGAGAGAGCTATGGTATATGC 832 Query 841 ATTGACACATCAGCCGAGGACATGTCCAAGTCCGGCCAAGGCGAGCAAGCAAGGGAGTGT 900 |||||||| ||||||||||||||||||||||||||||||| || ||||||||| ||||| Sbjct 833 CTTGACACACCAGCCGAGGACATGTCCAAGTCCGGCCAAGGTGAACAAGCAAGGTAGTGT 892 Query 901 CAAAAAGAATAATGGGTCGTGTAAGAGCAGTCCAGGTTGGAATTGGCTTGACCGATGGGT 960 ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 893 TAAAAAGAGTAATGGGTCGTGCAAGAGCAGTCCAGGTTGGAATTGGCTTGACCGATGGGT 952 Query 961 TGCAGACAGGCCATGGGAAGGTCGGTTGATGGAAGGTCCTACAAACTCATCAGAAAATGC 1020 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 953 TGCAGACAGGCCATGGGAAGGTCGGTTGATGGAAGGTCCTACGAACTCATCAGAGAATGC 1012 Query 1021 AAGGAAAAGCGAGAGCAGTGTGTCTGAACATGATACGGTTCAGGTCAGGAAGAACAATCT 1080 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1013 AAGGAAAAGTGAGAGCAGTGTGTCTGAACATGACACGGTTCAGGTCAGGAAGAACAATCT 1072 Query 1081 CACAACCAGAGTTTTGGCTAGACCTCCTCCAATGTCATCGTCTGCTACGAGTTCTGAGTC 1140 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 AACAACCAGAGTTTTGGCTAGACCTCCTCCAATGTCATCGTCTGCTACGAGTTCTGAGTC 1132 Query 1141 TTCATCGACTTCTCAATCCCCAGTTCCCTTCTCGGGAAGTTTCCTTGAGGAAGGAGGGTA 1200 ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1133 TTCGTCAACATCTCAATCCCCAGTTCCCTTCTCGGGAAGTTTCCTTGAGGAAGGAGGGTA 1192 Query 1201 CTACAGAAAGCCTAGCTACATGAGCCTCACACAATCTATTAAAGCTAAGCAGAGACGATC 1260 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1193 CTACAGAAAGCCGAGCTACATGAGCCTGACACAATCTATTAAAGCTAAGCAGAGACGATC 1252 Query 1261 AGGGTCTTCGTCCTCTTGTTCCAAAACACCGTTTGAAAAGAAACAGTCAATGTCTTACAA 1320 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1253 AGGGTCTTCATCCTCTTGTTCCAAAACACCGTTTGAGAAGAAACAGTCAATGTCTTACAA 1312 Query 1321 CGGAGATGTAAATGTAAGGCGTAGTGCTGGTTCGGATCCGTTGAACAACCAGTGGACTGA 1380 ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 1313 CGGAGATGTAAATGTAAGGCGTAGTGCTGGTTCGGATCCATTGAGCAACCAGTGGACTGA 1372 Query 1381 TCTATACCCACCAGCTCAAGTAACAGGAAGACATATGTGGGCAAAGAGCCAGAGAGGCTA 1440 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1373 TCTATACCCACCAGCTCAAGTAACAGGTAGACATATGTGGGCAAAGAGCCAGAGAGGCTA 1432 Query 1441 AGCAATCGTGCCTTCAATCATCTCAACAGCTTGTTGGTCCCATGAAACACATACACGGAA 1500 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1433 AGCAATCATGCCTTCAATCATCTCAACAGCTTGTTGGTCCCATGAAACACATACACGGAA 1492 Query 1501 TATAGATACAGAAGCAACTTCTGTTTATCttttttttACATATGAATGTTAAGGAATTAG 1560 |||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| Sbjct 1493 TATAGATACAGAAGCAACTTCTGTGTATCTTTTT---ACATATGAATGTTGAGGAATTAG 1549 Query 1561 TTTCGAGACTACAAATGTCGTTGTTTGGCACTTGGATCATTAATCGTTTACTTCTCGTAT 1620 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 1550 TTTCGAGACTACAAATCTCGTTGTTTGGCACTTGGATCATCAATCGTTTACTTCTCATAT 1609 Query 1621 TTC-TGAAACAATCTATTCCTAGCTCTTGTCAATATG 1656 ||| ||||||||||| ||||||||||||||||| ||| Sbjct 1610 TTCCTGAAACAATCTGTTCCTAGCTCTTGTCAACATG 1646 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62087099350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5