BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72670.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476404 jgi|Araly1|476404|fgenesh2_kg.2__1534__AT1G72670.1 2556 0.0
> Ahg476404 jgi|Araly1|476404|fgenesh2_kg.2__1534__AT1G72670.1
Length=1646
Score = 2556 bits (1384), Expect = 0.0
Identities = 1568/1657 (95%), Gaps = 12/1657 (1%)
Strand=Plus/Plus
Query 1 ATCATTCTTCAGGCCACCAAAGTTCCCAGAAActttctctttcttcttcttctccttctt 60
||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||
Sbjct 1 ATCATTCTTCAGGCCACCAAAATTCCCAGAAACTTTCTCTCTCTTTTTCTTCTTCTTCTT 60
Query 61 cttctctctcGAGtttttttACAAATATATTCTCGAACCCACCTTTCTCCGCCGGATCTG 120
| | |||||||| |||||||| ||| ||||||||| | ||||||||||||||||||||
Sbjct 61 C--CCCTCTCGAGATTTTTTACTTATAAATTCTCGAATCGACCTTTCTCCGCCGGATCTG 118
Query 121 ATTCCAAAACCTGTGAAAGTCTCCAGCTTTACTACAGATTTTTGAAGAACAACAAAAGGG 180
||||||||||||||||||||||||| ||||| |||||| |||||||| ||| ||| ||
Sbjct 119 ATTCCAAAACCTGTGAAAGTCTCCAACTTTATTACAGA-TTTTGAAG---AAC-AAA-GG 172
Query 181 TTTCAAATTTGAGCAAATGGGTGGCTCTGGAAATTGGATTAAATCTCTGATAACTAACaa 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 173 TTTCAAATTTGAGCAAATGGGTGGCTCTGGGAATTGGATTAAATCTCTGATAACTAACAA 232
Query 241 aaaaaaCATCACTGATGATCAAGAGAAGAACATCAAGAAGAAATGGAAACTATGGAGGAC 300
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 233 AAAACCCATCACTGATGATCAAGAGAAGAATATCAAGAAGAAATGGAAACTATGGAGGAC 292
Query 301 TTCATCGGAAGGTTTGATTTCTTCCTCAAAGGGTTTCAAGAGCCGTGGTGGTAGTTATGG 360
|||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 293 TTCATCAGAAGGTTTAATTTCTTCCTCAAAAGGTTTCAAGAGCCGTGGTGGTAGTTACGG 352
Query 361 AACTCCTTCGTTAGGCTCAGATCCGCCGTCATTCTCTGCTGACGACTCTTTCACGGCGGC 420
|||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 353 AACTCCTTCGTTGGGTTCAGATCCGCCGTCTTTCTCTGCTGACGAGTCTTTCACGGCGGC 412
Query 421 TGTTGCTGCTGTCATTAGAGCTCCGCCGAAAGATTTCTTTCTTGTTAAACGTGAATGGGC 480
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 413 TGTTGCTGCAGTCATCAGAGCTCCGCCGAAAGATTTCTTTCTTGTTAAACGAGAATGGGC 472
Query 481 TGCTACACGGATTCAAGCTGCTTTTCGAGCTTTCCTGGCAAGACAAGCGCTGAGAGCTCT 540
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 473 TGCTACACGGATTCAGGCTGCTTTTCGAGCTTTCCTGGCAAGACAAGCGCTGAGAGCTTT 532
Query 541 GAAGGCCGTAGTGAGGATTCAGGCAATATTCCGTGGGAGACAAGTCCGGAAACAAGCAGA 600
|||||| || |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 533 GAAGGCAGTGGTGAGGATTCAGGCGATATTCCGTGGCAGGCAAGTCCGGAAACAAGCAGA 592
Query 601 TGTCACCCTAAGGTGTATGCAAGCTCTTGTACGAGTCCAAGCTCGGGTACGAGCTCATTG 660
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 593 TGTGACACTAAGGTGTATGCAAGCTCTTGTTCGAGTCCAAGCTCGGGTACGAGCTCATTG 652
Query 661 TAACAGGGGGCCTTCAGATGGACAGGAGTTGGAGAAGCCATCTGATCAACAAAAAGATGA 720
|| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 653 CAATAGGGGGCCTTCAGATGGACTGGACTTGCAGAAGCCATCTGATCAACAAAAAGATGA 712
Query 721 TCCGGCAAAACAGGCTGAGAAGGGTTGGTGTGATAGCCCGGGAAGTATCAATGAAGTGAG 780
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 713 TCCGGCCAAACAGGCTGAGAAGGGTTGGTGTGATAGCCCGGGAAGTATAAATGAAGTGAG 772
Query 781 AACGAAGCTACAAATGAGGCAAGAAGGAGCAATCAAGAGGGAGAGAGCTATGGTATATGC 840
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AACAAAGCTACAAATGAGGCAAGAAGGAGCAATCAAGAGGGAGAGAGCTATGGTATATGC 832
Query 841 ATTGACACATCAGCCGAGGACATGTCCAAGTCCGGCCAAGGCGAGCAAGCAAGGGAGTGT 900
|||||||| ||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 833 CTTGACACACCAGCCGAGGACATGTCCAAGTCCGGCCAAGGTGAACAAGCAAGGTAGTGT 892
Query 901 CAAAAAGAATAATGGGTCGTGTAAGAGCAGTCCAGGTTGGAATTGGCTTGACCGATGGGT 960
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 893 TAAAAAGAGTAATGGGTCGTGCAAGAGCAGTCCAGGTTGGAATTGGCTTGACCGATGGGT 952
Query 961 TGCAGACAGGCCATGGGAAGGTCGGTTGATGGAAGGTCCTACAAACTCATCAGAAAATGC 1020
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 953 TGCAGACAGGCCATGGGAAGGTCGGTTGATGGAAGGTCCTACGAACTCATCAGAGAATGC 1012
Query 1021 AAGGAAAAGCGAGAGCAGTGTGTCTGAACATGATACGGTTCAGGTCAGGAAGAACAATCT 1080
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1013 AAGGAAAAGTGAGAGCAGTGTGTCTGAACATGACACGGTTCAGGTCAGGAAGAACAATCT 1072
Query 1081 CACAACCAGAGTTTTGGCTAGACCTCCTCCAATGTCATCGTCTGCTACGAGTTCTGAGTC 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AACAACCAGAGTTTTGGCTAGACCTCCTCCAATGTCATCGTCTGCTACGAGTTCTGAGTC 1132
Query 1141 TTCATCGACTTCTCAATCCCCAGTTCCCTTCTCGGGAAGTTTCCTTGAGGAAGGAGGGTA 1200
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TTCGTCAACATCTCAATCCCCAGTTCCCTTCTCGGGAAGTTTCCTTGAGGAAGGAGGGTA 1192
Query 1201 CTACAGAAAGCCTAGCTACATGAGCCTCACACAATCTATTAAAGCTAAGCAGAGACGATC 1260
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1193 CTACAGAAAGCCGAGCTACATGAGCCTGACACAATCTATTAAAGCTAAGCAGAGACGATC 1252
Query 1261 AGGGTCTTCGTCCTCTTGTTCCAAAACACCGTTTGAAAAGAAACAGTCAATGTCTTACAA 1320
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1253 AGGGTCTTCATCCTCTTGTTCCAAAACACCGTTTGAGAAGAAACAGTCAATGTCTTACAA 1312
Query 1321 CGGAGATGTAAATGTAAGGCGTAGTGCTGGTTCGGATCCGTTGAACAACCAGTGGACTGA 1380
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1313 CGGAGATGTAAATGTAAGGCGTAGTGCTGGTTCGGATCCATTGAGCAACCAGTGGACTGA 1372
Query 1381 TCTATACCCACCAGCTCAAGTAACAGGAAGACATATGTGGGCAAAGAGCCAGAGAGGCTA 1440
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1373 TCTATACCCACCAGCTCAAGTAACAGGTAGACATATGTGGGCAAAGAGCCAGAGAGGCTA 1432
Query 1441 AGCAATCGTGCCTTCAATCATCTCAACAGCTTGTTGGTCCCATGAAACACATACACGGAA 1500
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 AGCAATCATGCCTTCAATCATCTCAACAGCTTGTTGGTCCCATGAAACACATACACGGAA 1492
Query 1501 TATAGATACAGAAGCAACTTCTGTTTATCttttttttACATATGAATGTTAAGGAATTAG 1560
|||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||
Sbjct 1493 TATAGATACAGAAGCAACTTCTGTGTATCTTTTT---ACATATGAATGTTGAGGAATTAG 1549
Query 1561 TTTCGAGACTACAAATGTCGTTGTTTGGCACTTGGATCATTAATCGTTTACTTCTCGTAT 1620
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1550 TTTCGAGACTACAAATCTCGTTGTTTGGCACTTGGATCATCAATCGTTTACTTCTCATAT 1609
Query 1621 TTC-TGAAACAATCTATTCCTAGCTCTTGTCAATATG 1656
||| ||||||||||| ||||||||||||||||| |||
Sbjct 1610 TTCCTGAAACAATCTGTTCCTAGCTCTTGTCAACATG 1646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5