BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72680.1 Length=1322 Score E Sequences producing significant alignments: (Bits) Value Ahg926633 jgi|Araly1|926633|scaffold_202194.1 1716 0.0 Ahg931559 jgi|Araly1|931559|scaffold_304016.1 996 0.0 > Ahg926633 jgi|Araly1|926633|scaffold_202194.1 Length=1110 Score = 1716 bits (929), Expect = 0.0 Identities = 1019/1063 (96%), Gaps = 4/1063 (0%) Strand=Plus/Plus Query 141 ATGAGTTCTTCAGAGAGTGTGGAAAACGAGTGCATGTGTTGGGCTGCAAGAGATCCATCT 200 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 22 ATGAGTTCTTCAGAGAGTGGGGAAAACGAGTGCATGTGTTGGGCTGCAAAAGATCCATCT 81 Query 201 GGTCTTCTTTCTCCTCA-TACTATCACTCGCAGGTCTGTTACAACTGACGATGTTTCACT 259 ||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||||| Sbjct 82 GGTCTTCTTTCTCCTCACAAAT-TCACTCGCAGGTCTGTTACAAGTGACGATGTTTCACT 140 Query 260 CACAATCACTCATTGTGGAGTGTGTTACGCTGATGTTATCTGGAGTAGAAACCAACATGG 319 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 141 CACAATCACTCATTGTGGAGTGTGTTACGCTGATGTTATCTGGACTAGAAACCAACATGG 200 Query 320 AGACTCCAAGTACCCTTTGGTTCCTGGGCATGAGATTGCTGGAATAGTGACTAAGGTTGG 379 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 201 AGACTCTAAGTACCCTTTGGTTCCTGGACATGAGATTGCTGGAATAGTGACTAAGGTTGG 260 Query 380 GCCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTGGAACGTATGTTAACTC 439 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 261 GTCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTGGAACATATGTTAACTC 320 Query 440 CTGCAGGGAGTGTGAATATTGTAATGAAGGACAAGAAGTTAATTGTGCGAAAGGAGTTTT 499 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 321 GTGCAGGGAGTGTGAATATTGTAACGAAGGACAAGAAGTTAATTGTGCAAAAGGAGTTTT 380 Query 500 TACTTTCAATGGCATTGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCTAGTCACAT 559 |||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 381 TACTTTCAATGGTATTGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCCAGCCACAT 440 Query 560 TGTTGTTCATGAAAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGC 619 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 TGTTGTTCATGAGAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGC 500 Query 620 ACCATTACTCTGTGCTGGAATCACGGTTTATGCTCCTATGATGCGTCACAATATGAATCA 679 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 501 ACCATTACTCTGTGCTGGAATCACGGTTTTTGCGCCTATGATGCGTCACAATATGAATCA 560 Query 680 ACCTGGTAAATCTCTTGGGGTGATCGGGCTAGGTGGTCTTGGACACATGGCGGTTAAGTT 739 |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| || Sbjct 561 ACCTGGTAAATCTCTTGGGGTGATTGGGCTAGGTGGTCTTGGGCACATGGCAGTTAAATT 620 Query 740 TGGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAAGA 799 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 621 TGGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAGGA 680 Query 800 AGCTTTGAATCTGCTAGGAGCTGAGAATTTCGTTATCTCATCTGACCATGACCAGATGAA 859 ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 681 AGCTTTGAATCTGCTGGGAGCTGAGAATTTTGTTATCTCGTCTGACCATGACCAGATGAA 740 Query 860 GGCACTAGAGAAATCTCTAGACTTTCT-AGTTGACACAGCATCTGGTGATCACGCGTTTG 918 |||||||| |||||||||||||||| | | |||| ||||||||||||||||||||||||| Sbjct 741 GGCACTAGCGAAATCTCTAGACTTTATCA-TTGATACAGCATCTGGTGATCACGCGTTTG 799 Query 919 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTATTGGTTGGTTTCCCAAGTG 978 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 800 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTCCTGGTTGGTTTCCCAAGTG 859 Query 979 AAATTAAAATCAGTCCTGCCAATCTCAATCTTGGTATGAGAATGCTCGCTGGAAGTGTAA 1038 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 860 AAATTAAAATCAGTCCTGCCAATCTCAATCTTGGTATGAGAATGCTCGCGGGAAGTGTAA 919 Query 1039 CCGGGGGGACCAAAATAACACAGCAAATGTTAGATTTCTGTGCAGCTCATAAGATTTATC 1098 ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| | Sbjct 920 CCGGGGGTACCAAAATAACACAGGAAATGCTAGATTTCTGTGCAGCTCATAAGATTTACC 979 Query 1099 CAAACATAGAGGTGATTCCCATTCAAAAGATAAACGAAGCTCTCGAAAGAGTGGTGAAGA 1158 ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 980 CAAACATAGAGGTAATTCCCATTCAGAATATAAACGAAGCTCTCGAAAGAGTGGTGAAGA 1039 Query 1159 AGGACATCAAGTACCGTTTCGTGATTGACATCAAGAACTCCCT 1201 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1040 AGGACATCAAGTACCGTTTCGTGATTGACATCAAGAACTCCCT 1082 > Ahg931559 jgi|Araly1|931559|scaffold_304016.1 Length=859 Score = 996 bits (539), Expect = 0.0 Identities = 601/631 (95%), Gaps = 4/631 (1%) Strand=Plus/Plus Query 381 CCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTGGAACGTATGTTAACTCC 440 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 198 CCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTAGAACGTATGTTAACTCC 257 Query 441 TGCAGGGAGTGTGAATATTGTAATGAAGGACAAGAAGTTAATTGTGCGAAAGGAGTTTTT 500 ||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||||| Sbjct 258 TGCAGGGAGTGTGAATATTGTAACGACGGACAAGCAGTTAATTGTGCAAAAGGAGTTTTT 317 Query 501 ACTTTCAATGGCATTGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCTAGTCACATT 560 ||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| Sbjct 318 ACTTTCAATGGTATCGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCCAGCCACATT 377 Query 561 GTTGTTCATGAAAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGCA 620 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 GTTGTTCATGAGAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGCA 437 Query 621 CCATTACTCTGTGCTGGAATCACGGTTTATGCTCCTATGATGCGTCACAATATGAATCAA 680 |||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| Sbjct 438 CCATTACTCTGTGCTGGAATCACGGTTTTTGCGCCTATGATGCATCACAATATGAATCAA 497 Query 681 CCTGGTAAATCTCTTGGGGTGATCGGGCTAGGTGGTCTTGGACACATGGCGGTTAAGTTT 740 ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct 498 CCTGGTAAATCTCTTGGGGTGATTGGGCTAGGTGGTCTTGGGCACATGGCAGTTAAATTT 557 Query 741 GGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAAGAA 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 558 GGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAGGAA 617 Query 801 GCTTTGAATCTGCTAGGAGCTGAGAATTTCGTTATCTCATCTGACCATGAC-CAGATGAA 859 |||||||||||||| |||||||||||||| |||||||| |||||||||| | |||||||| Sbjct 618 GCTTTGAATCTGCTGGGAGCTGAGAATTTTGTTATCTCGTCTGACCATG-CTCAGATGAA 676 Query 860 GGCACTAGAGAAATCTCTAGACTTTCT-AGTTGACACAGCATCTGGTGATCACGCGTTTG 918 |||||||| |||||||||||||||| | | |||| ||||||||||||||||||||||||| Sbjct 677 GGCACTAGCGAAATCTCTAGACTTTATCA-TTGATACAGCATCTGGTGATCACGCGTTTG 735 Query 919 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTATTGGTTGGTTTCCCAAGTG 978 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 736 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTCCTGGTTGGTTTCCCAAGTG 795 Query 979 AAATTAAAATCAGTCCTGCCAATCTCAATCT 1009 ||||||||||||||||||||||||||||||| Sbjct 796 AAATTAAAATCAGTCCTGCCAATCTCAATCT 826 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49445423349 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5