BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72680.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926633 jgi|Araly1|926633|scaffold_202194.1 1716 0.0
Ahg931559 jgi|Araly1|931559|scaffold_304016.1 996 0.0
> Ahg926633 jgi|Araly1|926633|scaffold_202194.1
Length=1110
Score = 1716 bits (929), Expect = 0.0
Identities = 1019/1063 (96%), Gaps = 4/1063 (0%)
Strand=Plus/Plus
Query 141 ATGAGTTCTTCAGAGAGTGTGGAAAACGAGTGCATGTGTTGGGCTGCAAGAGATCCATCT 200
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 22 ATGAGTTCTTCAGAGAGTGGGGAAAACGAGTGCATGTGTTGGGCTGCAAAAGATCCATCT 81
Query 201 GGTCTTCTTTCTCCTCA-TACTATCACTCGCAGGTCTGTTACAACTGACGATGTTTCACT 259
||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||||
Sbjct 82 GGTCTTCTTTCTCCTCACAAAT-TCACTCGCAGGTCTGTTACAAGTGACGATGTTTCACT 140
Query 260 CACAATCACTCATTGTGGAGTGTGTTACGCTGATGTTATCTGGAGTAGAAACCAACATGG 319
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 141 CACAATCACTCATTGTGGAGTGTGTTACGCTGATGTTATCTGGACTAGAAACCAACATGG 200
Query 320 AGACTCCAAGTACCCTTTGGTTCCTGGGCATGAGATTGCTGGAATAGTGACTAAGGTTGG 379
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 201 AGACTCTAAGTACCCTTTGGTTCCTGGACATGAGATTGCTGGAATAGTGACTAAGGTTGG 260
Query 380 GCCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTGGAACGTATGTTAACTC 439
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 261 GTCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTGGAACATATGTTAACTC 320
Query 440 CTGCAGGGAGTGTGAATATTGTAATGAAGGACAAGAAGTTAATTGTGCGAAAGGAGTTTT 499
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 321 GTGCAGGGAGTGTGAATATTGTAACGAAGGACAAGAAGTTAATTGTGCAAAAGGAGTTTT 380
Query 500 TACTTTCAATGGCATTGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCTAGTCACAT 559
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 381 TACTTTCAATGGTATTGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCCAGCCACAT 440
Query 560 TGTTGTTCATGAAAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGC 619
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TGTTGTTCATGAGAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGC 500
Query 620 ACCATTACTCTGTGCTGGAATCACGGTTTATGCTCCTATGATGCGTCACAATATGAATCA 679
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 501 ACCATTACTCTGTGCTGGAATCACGGTTTTTGCGCCTATGATGCGTCACAATATGAATCA 560
Query 680 ACCTGGTAAATCTCTTGGGGTGATCGGGCTAGGTGGTCTTGGACACATGGCGGTTAAGTT 739
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 561 ACCTGGTAAATCTCTTGGGGTGATTGGGCTAGGTGGTCTTGGGCACATGGCAGTTAAATT 620
Query 740 TGGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAAGA 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 621 TGGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAGGA 680
Query 800 AGCTTTGAATCTGCTAGGAGCTGAGAATTTCGTTATCTCATCTGACCATGACCAGATGAA 859
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 681 AGCTTTGAATCTGCTGGGAGCTGAGAATTTTGTTATCTCGTCTGACCATGACCAGATGAA 740
Query 860 GGCACTAGAGAAATCTCTAGACTTTCT-AGTTGACACAGCATCTGGTGATCACGCGTTTG 918
|||||||| |||||||||||||||| | | |||| |||||||||||||||||||||||||
Sbjct 741 GGCACTAGCGAAATCTCTAGACTTTATCA-TTGATACAGCATCTGGTGATCACGCGTTTG 799
Query 919 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTATTGGTTGGTTTCCCAAGTG 978
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 800 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTCCTGGTTGGTTTCCCAAGTG 859
Query 979 AAATTAAAATCAGTCCTGCCAATCTCAATCTTGGTATGAGAATGCTCGCTGGAAGTGTAA 1038
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 860 AAATTAAAATCAGTCCTGCCAATCTCAATCTTGGTATGAGAATGCTCGCGGGAAGTGTAA 919
Query 1039 CCGGGGGGACCAAAATAACACAGCAAATGTTAGATTTCTGTGCAGCTCATAAGATTTATC 1098
||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 920 CCGGGGGTACCAAAATAACACAGGAAATGCTAGATTTCTGTGCAGCTCATAAGATTTACC 979
Query 1099 CAAACATAGAGGTGATTCCCATTCAAAAGATAAACGAAGCTCTCGAAAGAGTGGTGAAGA 1158
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 980 CAAACATAGAGGTAATTCCCATTCAGAATATAAACGAAGCTCTCGAAAGAGTGGTGAAGA 1039
Query 1159 AGGACATCAAGTACCGTTTCGTGATTGACATCAAGAACTCCCT 1201
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AGGACATCAAGTACCGTTTCGTGATTGACATCAAGAACTCCCT 1082
> Ahg931559 jgi|Araly1|931559|scaffold_304016.1
Length=859
Score = 996 bits (539), Expect = 0.0
Identities = 601/631 (95%), Gaps = 4/631 (1%)
Strand=Plus/Plus
Query 381 CCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTGGAACGTATGTTAACTCC 440
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 198 CCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTAGAACGTATGTTAACTCC 257
Query 441 TGCAGGGAGTGTGAATATTGTAATGAAGGACAAGAAGTTAATTGTGCGAAAGGAGTTTTT 500
||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||
Sbjct 258 TGCAGGGAGTGTGAATATTGTAACGACGGACAAGCAGTTAATTGTGCAAAAGGAGTTTTT 317
Query 501 ACTTTCAATGGCATTGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCTAGTCACATT 560
||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 318 ACTTTCAATGGTATCGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCCAGCCACATT 377
Query 561 GTTGTTCATGAAAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGCA 620
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GTTGTTCATGAGAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGCA 437
Query 621 CCATTACTCTGTGCTGGAATCACGGTTTATGCTCCTATGATGCGTCACAATATGAATCAA 680
|||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||
Sbjct 438 CCATTACTCTGTGCTGGAATCACGGTTTTTGCGCCTATGATGCATCACAATATGAATCAA 497
Query 681 CCTGGTAAATCTCTTGGGGTGATCGGGCTAGGTGGTCTTGGACACATGGCGGTTAAGTTT 740
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||
Sbjct 498 CCTGGTAAATCTCTTGGGGTGATTGGGCTAGGTGGTCTTGGGCACATGGCAGTTAAATTT 557
Query 741 GGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAAGAA 800
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 558 GGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAGGAA 617
Query 801 GCTTTGAATCTGCTAGGAGCTGAGAATTTCGTTATCTCATCTGACCATGAC-CAGATGAA 859
|||||||||||||| |||||||||||||| |||||||| |||||||||| | ||||||||
Sbjct 618 GCTTTGAATCTGCTGGGAGCTGAGAATTTTGTTATCTCGTCTGACCATG-CTCAGATGAA 676
Query 860 GGCACTAGAGAAATCTCTAGACTTTCT-AGTTGACACAGCATCTGGTGATCACGCGTTTG 918
|||||||| |||||||||||||||| | | |||| |||||||||||||||||||||||||
Sbjct 677 GGCACTAGCGAAATCTCTAGACTTTATCA-TTGATACAGCATCTGGTGATCACGCGTTTG 735
Query 919 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTATTGGTTGGTTTCCCAAGTG 978
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 736 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTCCTGGTTGGTTTCCCAAGTG 795
Query 979 AAATTAAAATCAGTCCTGCCAATCTCAATCT 1009
|||||||||||||||||||||||||||||||
Sbjct 796 AAATTAAAATCAGTCCTGCCAATCTCAATCT 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5