BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72690.1
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926634 jgi|Araly1|926634|scaffold_202195.1 431 3e-120
> Ahg926634 jgi|Araly1|926634|scaffold_202195.1
Length=305
Score = 431 bits (233), Expect = 3e-120
Identities = 279/301 (93%), Gaps = 3/301 (1%)
Strand=Plus/Plus
Query 55 AGA-CAAAAACCATCGATGGCGGATCAAAACCGATCAGAGGAGAAGACTGTGAAATCGCC 113
||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 6 AGATCAAGAACCATCGATGGCGGATCAAAACCGATCAGAGGAGAAGACGGTGAAATCGCC 65
Query 114 AAATGTGTTTGAACGAGTTAAAGAAGAAATAGAGGCAATGGGTCATCATGAAAAGTCCAA 173
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 66 TAATGTGTTTGAACGAGTCAAAGAAGAAATAGAAGCAATGGGTCATCATGAAAAGTCAAA 125
Query 174 GAGTCGTCACCATGACAAAGAGACTCATGGAACAAGTGACGACATTGATGAGAGCACTCC 233
||||| ||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 126 GAGTCATCACCATCACAAAGAGACTCATGGAACAAGTGACGATATTGATCAGAACACTCC 185
Query 234 AATTGATTATGTGAAAGGACCTGGTTTCTTTCAACGACTGAAAGAAGAGATTGAAGCTAT 293
||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 186 AATTGATTATGTGAAGGGACCTGGTTTCTTTCAACGAGTCAAAGAAGAGATTGAAGCCAT 245
Query 294 CTTTAATGCTGTTACTCCCAAGCGTTCTTCAAAGAAGTGAAATTGT-ATCATATCTGTGT 352
||||||| |||||||||||||||||||||||||||| |||| || | || ||||||||||
Sbjct 246 CTTTAATTCTGTTACTCCCAAGCGTTCTTCAAAGAAATGAACTT-TCATTATATCTGTGT 304
Query 353 T 353
|
Sbjct 305 T 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18429149487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5