BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G72720.1

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926637 jgi|Araly1|926637|scaffold_202198.1                        545    1e-154


> Ahg926637 jgi|Araly1|926637|scaffold_202198.1
Length=433

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 395/438 (90%), Gaps = 27/438 (6%)
 Strand=Plus/Plus

Query  91   GGTTTGTTTGCAAGTGAAGATGTTCAGATCTAAGTCATGCAGAGAAGAGACCAGAAGTAG  150
            |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct  2    GGTTTGTTTGCAAGTGAAGATGTTCAGATCCAAGTCATGCAGAGAAGAGATCAGAAGTAG  61

Query  151  CAGCATCACCAACAAGTACCATTGCTTCAGTCATGGA-G--AA--A-AATCAGAATCAG-  203
            |||||||||| |||||||||||||||||||||||||| |  ||  | || ||||| ||| 
Sbjct  62   CAGCATCACCCACAAGTACCATTGCTTCAGTCATGGAGGAAAATCAGAAGCAGAAGCAGC  121

Query  204  ---AA---C--C--A-ACAAACCAGCAGCCACCAGTGATGATGAGATCTTACAGTACATC  252
               ||   |  |  | |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  122  ACCAAGCCCAACAAACACAAACCAGCAGCCACCAGTGATGATGAGATCATACAGCACATC  181

Query  253  AACTTATAATGCATACCAGAATCCAACAATTGTGAGAGACGACTCCAACAATAAATCGAA  312
            ||| | | |  |  |  ||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct  182  AAC-T-T-A--C--A--AGAATCCAACAATTGTGAGAGACGATTCCAACAGTAAATCCAA  232

Query  313  GAGAAGCAATAAGGTGAAGAAGAAAGGATTTAAGGGTTTGTGTGAGGCAGAGATTCAGAG  372
            ||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct  233  GAGAAGCAATAAGGTGAAGAAGAAAGGGTTCACGGGTTTGTGTGAGGCAGAGATTCAGAG  292

Query  373  GAAGAAGAGAGTGGCTTCTTATAATGTGTATGGTGTTGAAGGGAGAGTGAAAGGATCTAT  432
             |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  293  AAAGAAGAGAGTGGCTTCTTATAATGTGTATGGTGTTGAAGGGAGAGTGAAGGGATCTAT  352

Query  433  GAAGAAAAGCTTCAAATGGTTCAAGGAGACTTGTTCAAACGCTGTCTATGGTTTGTGGTG  492
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  353  GAAGAAAAGCTTCAAATGGTTCAAGGAGACTTGTTCAAATGCTGTCTATGGTTTGTGGTG  412

Query  493  ATCCAACCACAAATCTTC  510
            ||||||||||||||||||
Sbjct  413  ATCCAACCACAAATCTTC  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23483716872


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5