BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72730.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908883 jgi|Araly1|908883|Al_scaffold_0002_1964 2089 0.0
Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877 1048 0.0
Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445 1024 0.0
> Ahg908883 jgi|Araly1|908883|Al_scaffold_0002_1964
Length=1245
Score = 2089 bits (1131), Expect = 0.0
Identities = 1207/1245 (97%), Gaps = 0/1245 (0%)
Strand=Plus/Plus
Query 181 ATGGCAGGAATGGCATCTGATGGAACTCAATATGATCCTCGTCAGTTTGATACTAAGATG 240
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGGAATGGCGTCTGATGGAACACAATATGATCCTCGTCAGTTTGATACTAAGATG 60
Query 241 AATGCCATTCTCGGCGAGGAAGGAGAGGAAACATTCTACACTAACTATGACGAAGTTTGC 300
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATGCCGTACTCGGCGAGGAAGGAGAGGAAACATTCTACACTAACTATGACGAAGTTTGC 120
Query 301 GACAGCTTTGATGCAATGGAATTGCAACCAGATCTTCTCAGGGGTATTTATGCTTACGGT 360
|| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 121 GATAGCTTTGATGCAATGGAATTGAAACCAGATCTTCTTAGGGGTATTTATGCTTATGGT 180
Query 361 TTCGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATTATTCCATTCTGCAAGGGTCTTGAT 420
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTTGAGAAGCCTTCTGCTATTCAGCAGAGAGGAATTATTCCATTCTGCAAGGGTCTTGAT 240
Query 421 GTGATCCAGCAAGCTCAATCTGGAACTGGAAAGACCGCTACCTTTTGCTCTGGTGTTTTA 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTCATCCAGCAAGCTCAATCTGGAACTGGAAAGACCGCTACCTTTTGCTCTGGTGTTTTA 300
Query 481 CAGCAGCTCGATATTAGTTTGGTTCAATGCCAAGCTCTTGTTTTGGCACCTACCCGAGAA 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 CAGCAGCTCGATATTAGTTTGGTTCAATGCCAAGCTCTTGTTTTGGCTCCTACCCGAGAA 360
Query 541 CTTGCCCAGCAAATTGAAAAGGTTATGAGGGCACTTGGTGACTACCTTGGCGTCAAGGCT 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CTTGCCCAGCAAATTGAAAAGGTTATGAGGGCACTTGGTGACTATCTTGGCGTCAAGGCT 420
Query 601 CAGGCTTGTGTTGGTGGAACAAGTGTTCGTGAGGATCAACGTGTTCTTCAGTCTGGTGTT 660
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 421 CAGGCTTGTGTTGGTGGAACTAGTGTTCGTGAGGATCAACGCGTTCTTCAGTCTGGTGTT 480
Query 661 CATGTTGTTGTTGGAACCCCTGGTCGTGTCTTTGACTTGTTACGCAGACAATCCCTCCGT 720
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 481 CATGTTGTTGTTGGAACCCCTGGTCGTGTCTTTGACTTGTTGCGTAGACAATCCCTCCGC 540
Query 721 GCTGATGCAATCAAAATGTTTGTTCTTGATGAAGCTGATGAAATGCTCTCTCGTGGTTTC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTGATGCAATCAAAATGTTTGTTCTTGATGAAGCTGATGAAATGCTCTCTCGTGGTTTC 600
Query 781 AAGGATCAGATATACGACATCTTCCAGCTTCTTCCTTCCAAGGTTCAGGTTGGTGTTTTC 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 AAGGATCAGATATACGACATCTTCCAGCTTCTTCCTTCCAAGGTTCAGGTCGGTGTTTTC 660
Query 841 TCTGCTACAATGCCTCCCGAAGCCCTTGAGATCACAAGGAAGTTCATGAACAAACCAGTC 900
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 TCTGCTACAATGCCACCCGAAGCCCTTGAGATCACAAGGAAGTTTATGAACAAACCAGTC 720
Query 901 AGGATTCTGGTCAAGCGAGACGAGCTGACTCTTGAAGGTATCAAGCAGTTTTATGTCAAT 960
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 721 AGGATTCTGGTCAAGCGAGACGAGCTGACTCTGGAAGGTATTAAGCAGTTTTATGTCAAT 780
Query 961 GTAGACAAGGAAGAGTGGAAACTCGAGACACTATGCGATCTCTACGAGACACTGGCCATC 1020
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 GTAGACAAGGAAGAGTGGAAACTCGAGACACTATGTGATCTCTACGAGACACTGGCCATC 840
Query 1021 ACTCAAAGCGTCATCTTTGTGAACACAAGGCGTAAGGTTGATTGGCTAACCGACAAAATG 1080
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACGCAAAGTGTCATCTTTGTGAACACAAGGCGTAAGGTTGATTGGCTAACCGACAAAATG 900
Query 1081 AGAAGCCGTGACCACACTGTTTCAGCTACACACGGAGACATGGACCAGAACACAAGAGAC 1140
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 901 AGAAGCCGTGACCACACTGTCTCAGCCACACACGGAGACATGGACCAGAACACAAGAGAC 960
Query 1141 ATCATCATGCGCGAATTCCGCTCTGGGTCTTCCCGTGTCCTCATAACCACTGACCTCCTT 1200
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 961 ATCATCATGCGCGAATTCCGCTCTGGATCTTCCCGCGTCCTCATAACCACTGACCTTCTT 1020
Query 1201 GCTCGTGGTATCGATGTTCAGCAAGTCTCTCTGGTCATAAACTTTGACCTCCCAACCCAA 1260
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 GCTCGTGGTATTGATGTTCAGCAAGTCTCTCTTGTCATAAACTTTGACCTCCCAACCCAA 1080
Query 1261 CCGGAGAATTACCTTCATCGTATTGGAAGAAGTGGAAGGTTTGGGAGAAAGGGAGTAGCA 1320
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1081 CCGGAGAATTACCTTCACCGTATTGGAAGAAGTGGAAGGTTTGGAAGAAAGGGAGTGGCA 1140
Query 1321 ATCAATTTCATGACATCGGAGGATGAGAGAATGATGGCTGATATTCAGAGGTTTTACAAT 1380
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1141 ATCAATTTCATGACAACGGAGGATGAGAGAATGTTGGCTGATATTCAGAGGTTTTACAAT 1200
Query 1381 GTGGTCGTTGAGGAGTTGCCAAGCAATGTTGCTGATCTTCTCTGA 1425
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTGGTCGTTGAGGAGTTGCCAAGCAATGTTGCTGATCTTCTCTGA 1245
> Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877
Length=1239
Score = 1048 bits (567), Expect = 0.0
Identities = 928/1103 (84%), Gaps = 22/1103 (2%)
Strand=Plus/Plus
Query 304 AGCTTTGATGCAATGGAATTGCAACCAG-ATCTTCTCAGGGGTATTTATGCTTACGGTTT 362
||||||||||| |||| |||||| || | |||||||||||||| |||||||| |||||
Sbjct 118 AGCTTTGATGCCATGGGTTTGCAA-GAGAACCTTCTCAGGGGTATCTATGCTTATGGTTT 176
Query 363 CGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATTATTCCATTCTGCAAGGGTCTTGATGT 422
||| |||||||||||||||||||||||||||||| | || || |||||||||||||||||
Sbjct 177 CGAAAAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGT 236
Query 423 GATCCAGCAAGCTCAATCTGGAACTGGAAAGACCGCTACCTTT-TGCTCTGGTGTTTTAC 481
||||||||| || || ||||| |||||||| ||||| | |||| ||||||||||| || |
Sbjct 237 GATCCAGCAGGCACAGTCTGGTACTGGAAAAACCGCCA-CTTTCTGCTCTGGTGTCTTGC 295
Query 482 AGCAGCTCGA-TATTA-GTTTGGTTCAATGCCAAGCTCTTGTTTTGGCACCTACCCGAGA 539
||||||| || || || || || || ||||| ||||| |||||||| || ||| ||||
Sbjct 296 AGCAGCTTGACTA-TACCCTT-GTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGA 353
Query 540 ACTTGCCCAGCAAATTGAAAAGGTTATGAGGGCACTTGGTGACTACCTTGGCGTCAAGGC 599
||||| ||||| ||||| ||||| ||| | || |||||||| |||| |||||||| |
Sbjct 354 GCTTGCTCAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGATTACCAAGGCGTCAAAGT 413
Query 600 TCAGGCTTGTGTTGGTGGAACAAGTGTTCGTGAGGATCAACGTGTTCTTCAGTCTGGTGT 659
||| || |||||||||||||| || || ||||||||||| || |||| ||| |||||||
Sbjct 414 TCATGCCTGTGTTGGTGGAACCAGCGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGT 473
Query 660 TCATGTTGTTGTTGGAAC-CCCTGGTCGTGTCTTTGACTTG-TTACGCAGACAATCCCTC 717
||||||||| |||||||| ||| |||||||| |||||| || ||| | |||||||| ||
Sbjct 474 TCATGTTGTGGTTGGAACTCCC-GGTCGTGTGTTTGACATGCTTA-GAAGACAATCTCTT 531
Query 718 CGTGCTGA-TGCAATCAAAATGTTTGTTCTTGATGAAGCTGATGAAATGCTCTCTCGTGG 776
|| |||| ||| ||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 532 CGCCCTGATTGC-ATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGG 590
Query 777 TTTCAAGGATCAGATATACGACATCTTCCAGCTTCTTCCTTCC-AAGGTTCAGGTTGGTG 835
||||||||||||||| || ||||| |||||||||| ||| || ||| |||||||||| |
Sbjct 591 TTTCAAGGATCAGATCTATGACATATTCCAGCTTC-TCCCACCAAAGATTCAGGTTGGAG 649
Query 836 TTTTCTCTGCTACAATGCCTCCCGAAGCCCTTGAGATCACAAGGAAGTTCATGAACAAAC 895
| ||||| || || |||||||| ||||| || |||||||||||||| ||||||| |||||
Sbjct 650 TGTTCTCAGCAACGATGCCTCCGGAAGCTCTGGAGATCACAAGGAAATTCATGAGCAAAC 709
Query 896 CAGTCAGGATTC-TGGTCAAGCGAGACGAGCTGACTCTTGAAGGTATCAAGCAGTTTTAT 954
|||| | || || |||| || || || ||||| || ||||||||||||||||| || ||
Sbjct 710 CAGTGA-GAATCTTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTAC 768
Query 955 GTCAATGTAGACAAGGAAGAGTGGAAACTCGAGACACTATGCGATCTCTACGAGACACTG 1014
|| || || || || ||||||||||| |||||||| || ||||||||||| ||||| ||
Sbjct 769 GTGAACGTGGAGAAAGAAGAGTGGAAGCTCGAGACTCTCTGCGATCTCTATGAGACTCTA 828
Query 1015 GCCATCACTCAAAGCGTCATCTTTGTGAACACAAGGCGTAAGGTTGATTGGCTAACCGAC 1074
||||||||||| || ||||||||||| ||||| | || ||||| || ||||| || |||
Sbjct 829 GCCATCACTCAGAGTGTCATCTTTGTCAACACTCGTCGCAAGGTCGACTGGCTCACAGAC 888
Query 1075 AAAATGAGAAGCCGTGACCACACTGTTTCAGCTACACACGGAGACATGGACCAGAACACA 1134
||||||||||||||||||||||| || ||||| || || |||||||||||||| ||||||
Sbjct 889 AAAATGAGAAGCCGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACA 948
Query 1135 AGAGACATCATCATGCGCGAATTCCGCTCTGGGTCTTCCCGTGTCCTCATAACCACTGAC 1194
||||||||||||||| | |||||| | ||||| ||||| ||||| || || || || ||
Sbjct 949 AGAGACATCATCATGAGAGAATTCAGGTCTGGTTCTTCTCGTGTTCTAATCACGACCGAT 1008
Query 1195 CTCCTT-GCTCGTGGTATCGATGTTCAGCAAGTCTCTCTGGTCATAAACTTTGACCTCCC 1253
|| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1009 CT-CTTGGCTCGTGGTATTGATGTGCAGCAAGTCTCTCTGGTCATAAACTTTGACCTCCC 1067
Query 1254 AACCCAACCGGAGAATTACCTTCATCGTATTGGAAGAAGTGGAAGGTTTGGGAGAAAGGG 1313
||| || || |||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1068 AACTCAGCCAGAGAATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGG 1127
Query 1314 AGTAGCAATCAATTTCATGACATCG-GAGGATGAGAGAATGATGGCTGATATTCAGAGGT 1372
|| || || || ||| |||| ||| || ||||| |||||| || ||||||||||| |
Sbjct 1128 TGTGGCCATTAACTTCGTGAC-TCGTGATGATGATAGAATGCTGTTTGATATTCAGAAAT 1186
Query 1373 TTTACAATGTGGTCGTTGAGGAG 1395
| |||||||||||||||||||||
Sbjct 1187 TCTACAATGTGGTCGTTGAGGAG 1209
> Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445
Length=1239
Score = 1024 bits (554), Expect = 0.0
Identities = 930/1111 (84%), Gaps = 28/1111 (3%)
Strand=Plus/Plus
Query 304 AGCTTTGATGCAATGGAAT-TGCAACCAG-ATCTTCTCAGGGGTATTTATGCTTACGGTT 361
||||||||||| |||| | ||||| || | ||||||||||||||||||||||| ||||
Sbjct 118 AGCTTTGATGCCATGG-GTCTGCAA-GAGAACCTTCTCAGGGGTATTTATGCTTATGGTT 175
Query 362 TCGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATTATTCCATTCTGCAAGGGTCTTGATG 421
| ||||||||||||||||||||||||||||||||| | || || ||||| ||||||||||
Sbjct 176 TTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATTGTCCCCTTTTGCAAAGGTCTTGATG 235
Query 422 TGATCCAGCAAGCTCAATCTGGAACTGG-AAAGACCGCTACCTTT-TGCTCTGGTGTTTT 479
|||| || || || || ||||| ||||| ||| || || || ||| ||||||||||| ||
Sbjct 236 TGATTCAACAGGCCCAGTCTGGTACTGGGAAA-ACTGCGAC-TTTCTGCTCTGGTGTCTT 293
Query 480 ACAGCAGCTCGA-TAT-TAGTTTGGTTCAATGCCAAGCTCTTGTTT-TGGCACCTACCCG 536
|||||||| || | | | ||| | || || || ||| ||| || | || || || |
Sbjct 294 GCAGCAGCTGGACT-TCTCCCTTG-TCCAGTGTCAGGCT-TTGGTTCTAGCTCCAACTAG 350
Query 537 AGAACTTGCCCAGCAAATTGAAAAGGTTATGAGGGCACTTGGTGACTACCTTGGCGTCAA 596
||| ||||| ||||||||||| ||||| |||||||| || ||||| |||||||| |||||
Sbjct 351 AGAGCTTGCTCAGCAAATTGAGAAGGTCATGAGGGCCCTCGGTGATTACCTTGGTGTCAA 410
Query 597 GGCTCAGGCTTGTGTTGGTGGAACAAGTGTTCGTGAGGATCAACGTGTTCTTCA-GTCTG 655
|| ||| || |||||||||||||| ||||| ||||||||||| ||| | || || | |||
Sbjct 411 GGTTCACGCCTGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGTATCCTCCAAG-CTG 469
Query 656 GTGTTCATGTTGTTGTTGGAACCCCTGGTCGTGTCTTTGACTTGTT-ACGCAGACAATCC 714
|||| ||||||||||||||||| || || |||||||||||| |||| | | || || ||
Sbjct 470 GTGTCCATGTTGTTGTTGGAACTCCAGGACGTGTCTTTGACATGTTGAAG-AGGCAGTCT 528
Query 715 CTCCGTGCTGATG-CAATCAAAATGTTTGTTCTTGATGAAGCTGATGAAATGCTCTCTCG 773
||||||||||| || |||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 529 CTCCGTGCTGACAACA-TCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCG 587
Query 774 TGGTTTCAAGGATCAGATATACGACATCTTCCAGCTTCTTCCTTCCAAGGTTC-AGGTTG 832
|||||||||||| ||||| || ||||| ||||||||||| || |||| | || | ||||
Sbjct 588 TGGTTTCAAGGACCAGATCTATGACATATTCCAGCTTCTACCA-CCAAAGATCCAAGTTG 646
Query 833 GTGTTTTCTCTGCTACAATGCCTCCCGAAGCCCTTGAGATCACAAGGAAGTTCATGAACA 892
|||| ||||| || |||||||| || ||||| ||||||||||||||||||||||||| ||
Sbjct 647 GTGTGTTCTCCGCAACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGAGCA 706
Query 893 AACCAGTCAGGATTCT-GGTCAAGCGAGACGAGCTGACTCTTGAAGGTATCAAGCAGTTT 951
| ||||| || || || ||| ||||| || |||||||| ||||||||||||||||||||
Sbjct 707 AGCCAGTGAGAAT-CTTGGTGAAGCGTGATGAGCTGACCCTTGAAGGTATCAAGCAGTTC 765
Query 952 TATGTCAATGTAGACAAGGAAGAGTGGAAACTCGAGACACTATGCGATCTCTACGAGACA 1011
|||||||| || || || ||||||||||| ||||||||||| || ||||||||||||||
Sbjct 766 TATGTCAACGTTGAGAAAGAAGAGTGGAAGCTCGAGACACTTTGTGATCTCTACGAGACT 825
Query 1012 CTGGCCATCACTCAAAGCGTCATCTTTGTGAACACAAGGCGTAAGGTTGATTGGCTAACC 1071
|||||||||||||| || |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 826 CTGGCCATCACTCAGAGTGTCATCTTCGTGAACACCAGGCGTAAGGTTGATTGGCTCACA 885
Query 1072 GACAAAATGAGAAGCCGTGACCACACTGTTTCAGCTACACACGGAGACATGGACCAGAAC 1131
|||||||||||||||||||||||||| || || || || |||||||||||||||||||||
Sbjct 886 GACAAAATGAGAAGCCGTGACCACACAGTCTCTGCAACTCACGGAGACATGGACCAGAAC 945
Query 1132 ACAAGAGACATCATCATGCGCGAATTCCGCTCTGGGTCTTCCCGTGTCCTCATAACCACT 1191
|| ||||||||||||||| | || ||| | ||||| || |||||||| ||||| ||||||
Sbjct 946 ACCAGAGACATCATCATGAGAGAGTTCAGGTCTGGTTCCTCCCGTGTTCTCATCACCACT 1005
Query 1192 GACCTCCTTG-CTCGTGGTATCGATGTTCAGCAAGTCTCTCTGGTCATAAACTTTGACCT 1250
|||||| ||| |||||||||| |||||||| |||||||||||||| || ||||| || ||
Sbjct 1006 GACCTC-TTGGCTCGTGGTATTGATGTTCAACAAGTCTCTCTGGTTATCAACTTCGATCT 1064
Query 1251 CCCAACCCAACCGGAGAATTACCTTCATCGTATTGGAAGAAGTGGAAGGTTTGGGAGAAA 1310
|||||| || || ||||| ||||| || ||||| ||||||||||||||||| ||||||||
Sbjct 1065 CCCAACTCAGCCAGAGAACTACCTCCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAA 1124
Query 1311 GGGAGTAGCAATCAATTTCATGACATCG-GAGGATGAGAGAATGATGGCTGATATTCAGA 1369
||| || || |||||||| |||| || || ||||| || ||| || |||||||||||
Sbjct 1125 GGGTGTGGCGATCAATTTTGTGACC-CGCGATGATGACAGGATGCTGTTTGATATTCAGA 1183
Query 1370 GGTTTTACAATGTGGTCGTTGAGGAGTTGCC 1400
||| || || ||||| || || ||| ||||
Sbjct 1184 AGTTCTATAACGTGGTTGTCGAAGAGCTGCC 1214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5