BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72740.1
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476410 jgi|Araly1|476410|fgenesh2_kg.2__1540__AT1G72740.1 1125 0.0
> Ahg476410 jgi|Araly1|476410|fgenesh2_kg.2__1540__AT1G72740.1
Length=1033
Score = 1125 bits (609), Expect = 0.0
Identities = 833/933 (89%), Gaps = 48/933 (5%)
Strand=Plus/Plus
Query 228 CAAGGGTTAGATGGGAAACCAGAAACTAAAGTGGACGGCG-GAGGAAGAGGAGGCGTTAC 286
||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 120 CAAGGGTTAGATGGGAAACCAGAAATTAAAGTGGACGG-GAGAGGAAGAGGAGGCGTTAC 178
Query 287 TCGCCGGAATCAGAAAGCACGGTCCTGGAAAGTGGAAGAATATTCTCCGGGATCCAGAAT 346
|||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 179 TCGCCGGAATTGGAAAGCACGGTCCTGGTAAGTGGAAGAATATTCTCCGGGATCCCGAAT 238
Query 347 TCGCTGATCAGCTCATCCATCGCTCCAACATTGACCTAAAGGATAAGTGGCGTAACTTGA 406
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 TCGCTGATCAGCTCATCCATCGCTCCAATATTGACCTAAAGGATAAGTGGCGTAACTTGA 298
Query 407 GTGTTCCCCCTGGTACTCAAAGTTTAACTAATAAGGCACGGCCAG-CAAAAGTCAAAGAG 465
||||| |||||||||||||| ||| ||||||||||||||| || | ||||||||||||||
Sbjct 299 GTGTTGCCCCTGGTACTCAAGGTTCAACTAATAAGGCACGACC-GACAAAAGTCAAAGAG 357
Query 466 GAAGGCGACACTCCGGCTGCAGATGCAAATGATGCTGTCACTATTCCACGGCC---TA-T 521
||| | | || |||||| ||||| ||||| | |||||| ||| | || || |
Sbjct 358 GAA-G-G-----CC--CTGCAGTTGCAATTGATGATATCACTAATCCCCCTCCTAATACT 408
Query 522 -T-CCTACTATTCCACCTCCTCCCGGTCGGCGTACTTTACCTTCTGAGTTGATCCCTGAT 579
| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 409 ATCCCTACTATTCCACCTCCTCCCAATCGGCGTATTTTACCTTCTGAGTTGATCCCTGAT 468
Query 580 -----GA--AA-----------ATACAAAGAATGCTCCTAGGTATGACGGGGTGATATTT 621
|| || |||||||||||| ||| |||||||||||| ||||||||
Sbjct 469 GAAAAGAGTAACGTTGTGGTGGATACAAAGAATGTTCCCAGGTATGACGGGATGATATTT 528
Query 622 GAAGCTCTCTCTGCTTTAGCCGATGGTAATGGATCTGATGTCAGTTCCATTTATCATTTC 681
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 529 GAAGCTCTCTCTGCTTTAGCGGATGGTAATGGATCTGATGTCAGTTCCATTTTTCATTTC 588
Query 682 ATTGAGCCCAGGCATGAAGTACCGCCAAATTTTAGAAGAATCCTTAGTACAAGACTGAGG 741
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 589 ATTGAGCCTAGGCATGAAGTACCGCCAAATTTTAGAAGAATCCTTAGTTCAAGACTGAGG 648
Query 742 AGGCTTGCAGCTCAGAGCAAACTTGAAAAGGTTAGCACCTTCAAATCTATACAGAACTTC 801
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 649 AGGCTTGCAGCTCAGAGCAAACTTGAAAAGGTTAGCACCTTCAAATCTTTGCAGAACTTC 708
Query 802 TATAAGATACCCGATCCATCAGGAACAAAAATAGGTGTCCCAAAACCAAAGGAGACACAT 861
||||||||||| ||||||||||||||||||| | || ||||||| ||||||||||||||
Sbjct 709 TATAAGATACCGGATCCATCAGGAACAAAAAAACCTGCCCCAAAAACAAAGGAGACACAT 768
Query 862 ACGAAGCTGCGCCAAGCAAACAATCAGACCTCTGCTGATT-CACAACAGATGATCGAGGA 920
||||||||||||||||||||||||||| | |||||| ||| ||| |||||||||||||||
Sbjct 769 ACGAAGCTGCGCCAAGCAAACAATCAGGCTTCTGCT-ATTTCACTACAGATGATCGAGGA 827
Query 921 AGCTGCAATAACCGCAGCCTGTAAAGTCGTAGAGGCGGAGAATAAAATAGACGTTGCCAA 980
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 828 AGCTGCAATAACCGCTGCCTGTAAAGTCGTAGAGGCAGAGAATAAAATAGACGTTGCCAA 887
Query 981 ACTAGCAGCAGAAGAGTTTGAGAAGATGAC-AAAGATTGCAGAAGAAAATAGAAAACTCC 1039
|||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||
Sbjct 888 ACTAGCAGCAGAAGAGTTTGAGAAGATGACTAAAC-TTGCCGAAGAAACCGGAAAACTCC 946
Query 1040 TGGTCATAGCTACTGAGATGCATGAACTATGTTCCTG-TGGGGAGACTATGCTCTTGGCT 1098
|| | ||||||| |||||||||||||| |||||| || ||| ||| ||||||||||||||
Sbjct 947 TGTTGATAGCTAATGAGATGCATGAACAATGTTC-TGGTGGCGAGCCTATGCTCTTGGCT 1005
Query 1099 TGAATTGAATCTATGGGACATTCCTTGTAGCTC 1131
||| | ||||||||||||||||||||||||
Sbjct 1006 TGA---G--TCTATGGGACATTCCTTGTAGCTC 1033
Score = 82.4 bits (44), Expect = 8e-15
Identities = 47/48 (98%), Gaps = 1/48 (2%)
Strand=Plus/Plus
Query 3 TTTAATTTCGAGAGCGTAAATAGAAGACAAAATAAAAAGCATAAATTC 50
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TTTAATTTCGAGAGCGTAAATAGAAGACAAAATAAAA-GCATAAATTC 47
Score = 63.9 bits (34), Expect = 3e-09
Identities = 39/41 (95%), Gaps = 2/41 (5%)
Strand=Plus/Plus
Query 90 TCCTCCCGCAGTCACACAACTGCGCAGAGCCA-AAAATAAA 129
|||||||||||||||||||||||||||||||| |||| |||
Sbjct 46 TCCTCCCGCAGTCACACAACTGCGCAGAGCCAGAAAA-AAA 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48835456677
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5