BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72750.1
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476412 jgi|Araly1|476412|fgenesh2_kg.2__1542__AT1G72750.1 1829 0.0
Ahg471960 jgi|Araly1|471960|fgenesh2_kg.1__1914__AT1G17530.1 416 2e-115
> Ahg476412 jgi|Araly1|476412|fgenesh2_kg.2__1542__AT1G72750.1
Length=1159
Score = 1829 bits (990), Expect = 0.0
Identities = 1112/1168 (95%), Gaps = 19/1168 (2%)
Strand=Plus/Plus
Query 1 ACAACTGGACTGAGTCTTTCCCTAAAAACCCTAAACATAGATTTTTAGTTTAG-TTTGGT 59
||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||| ||
Sbjct 1 ACAACTGGACTGAGTCTTTCCCTAAAAACCCTAAACAGAGATTTTTTGTTTTGCTTT-GT 59
Query 60 TTCATTTCTCATTTCGGCAACC-A--AACCAAACATTCAGAGAGACACAACACAACCACA 116
|||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||
Sbjct 60 TTCATTTCTCATTTCGGCAACCAACCAAACAAACATTCAGAGAGACACAACACAA-CACA 118
Query 117 TCATCACACGTTtctctctctctctttcctctccgtcgtctctctctctctAGCCACCAC 176
|||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 119 TCATCACACG-TT-TCTCT-TCTCTTTCCTCTCCGTCGTCTCTCTCTCTATAGCCACCAT 175
Query 177 CAAAATCCTTAAAACCTAGACTTTTCTCTTCC-ATCGATGGCGGCTAATAACAGATCCGA 235
|||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 176 CAAAATCCATAAAACCTAGACTTTTCTC-CCCAATCCATGGCGGCTAATAACAGATCCGA 234
Query 236 TCATGGGTCAGACGAAAACACAAGACTTTACAATCCTTACCAAAACTACGAAGTCCCAAT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TCATGGGTCAGACGAAAACACAAGACTTTACAATCCTTACCAAAACTACGAAGTCCCAAT 294
Query 296 CAACAAATCTCAGTACCTTTACAAGCTTCCTACCTCCCCTGAGTTTCTCTTCACGGAGGA 355
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 295 CAACAAATCTCAGTACCTTTACAAGCTTCCAACATCCCCTGAGTTTCTCTTCACGGAGGA 354
Query 356 GGCTTTAAGGCAACGTAGATCTTGGGGTGAGAATCTCACTTTCTACACCGGAACAGCTTA 415
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTCTTTAAGGCAACGTAGATCTTGGGGTGAGAATCTCACTTTCTACACCGGAACAGCTTA 414
Query 416 CCTCGGTGGCTCCGTTGCCGGAGCTTCTGTTGGAGTCATCACTGGAGTCAAAAGCTTCGA 475
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 415 CCTCGGTGGATCCGTTGCCGGAGCTTCTGTTGGAGTTATCACTGGAGTCAAAAGCTTCGA 474
Query 476 ATCTGGCGACACTACTAAGCTCAAAATCAACAGGATCTTGAACTCTTCTGGTCAAACTGG 535
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 475 ATCTGGCGACACGACGAAGCTCAAAATCAACAGGATCTTGAACTCTTCTGGTCAAACGGG 534
Query 536 TCGAACTTGGGGTAATCGGATTGGTATCATTGGATTGGTTTACGCAGGGATCGAGAGTGG 595
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 535 TCGAACTTGGGGTAATAGGATTGGTATCATTGGGTTGGTTTACGCAGGGATCGAGAGTGG 594
Query 596 TATTGTGGCTGCCACGGATAGAGATGATGTTTGGACCAGTGTGGTGGCTGGTCTTGGAAC 655
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 595 TGTTGTGGCTGCCACGGATAGAGATGATGTTTGGACCAGTGTGGTGGCTGGTCTTGGGAC 654
Query 656 CGGAGCTGTTTGTAGAGCGGCGAGAGGAGTGAGATCTGCAGCTGTAGCTGGTGCTCTTGG 715
||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 655 CGGAGCTGTTTGTAGAGCGGCTAGAGGAGTGAGATCTGCGGCTGTGGCTGGTGCTCTTGG 714
Query 716 TGGACTTGCGGCTGGAGCTGTTGTAGCTGGGAAGCAAATTGTGAAGCGGTATGTGCCCAT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGGACTTGCGGCTGGAGCTGTTGTAGCTGGGAAGCAAATTGTGAAGCGGTATGTGCCCAT 774
Query 776 TTGAAGACTGCAAGAGTCTAATTGGCAGACTCTTTTTCGGGTCGTTGTTGAAATTTTTGA 835
||||||||||||||||||||||||| ||||||| ||||| || || ||| |||||||||
Sbjct 775 TTGAAGACTGCAAGAGTCTAATTGGAAGACTCTGTTTCG--TCATTTTTGGAATTTTTGA 832
Query 836 TAGGGGAAATGGTGAGAATTTGATAGGTTTGGTATGTCTTGGAATCATAAAAATGAAAAC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TAGGGGAAATGGTGAGAATTTGATAGGTTTGGTATGTCTTGGAATCATAAAAATGAAAAC 892
Query 896 TTTATTTGGTTTCTAGAGGTACAACAAGTCTGTATGTCA---AGTCATAATGCAGTTTCA 952
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 893 TTTATTTGGTTTCTAGAGGTACAACAAGTCTGTATGTCTGTCAGTCATAATGCAGTTTCA 952
Query 953 CTTTGAAGAATAACCTGCAAACCTTTTT-CTTATATTCATACTGATTAAATGTTTTGCCG 1011
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 953 CTTTGAAGAATAACCTGCAAACCTTTTTTCTTATATTCATACTGATAAAATGTTTTACCG 1012
Query 1012 ATTGGTAATTTAATTTGTCATGAGTGTGTTTGTTCTAGTTAGT-GTTTTATGTTTCTGTT 1070
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1013 ATTGGTAATTTAATTTGTCATGAGTGTGTTTCTTCTAGTTAGTTGTTTTATGTTTCTGTT 1072
Query 1071 TTTGATCAATGTTAACTCTTTCTTGATTCGTTGAGAAACTGATGTGTTGTATTACATTTG 1130
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1073 TTTGATCAATGTTAACTCTTTCTTGATTCGTTGAGAAACGGATGTGTTGTATTAGATTTG 1132
Query 1131 AAAATGAAGCTCTTCTCTCAAGTTTTTT 1158
|| ||||||||||||| ||||||||||
Sbjct 1133 TAA-TGAAGCTCTTCTCCCAAGTTTTTT 1159
> Ahg471960 jgi|Araly1|471960|fgenesh2_kg.1__1914__AT1G17530.1
Length=837
Score = 416 bits (225), Expect = 2e-115
Identities = 441/544 (81%), Gaps = 19/544 (3%)
Strand=Plus/Plus
Query 247 ACGAAAACACAAGACTTTA-CAATCCTTACCAAAACTACGAAGTCCCAATCAACAAATCT 305
|||||||||| | ||||| | ||||||||||||||||| | ||||| || |||| ||
Sbjct 102 ACGAAAACACGCGTCTTTATC-ATCCTTACCAAAACTACCAGGTCCCGAT---CAAAGCT 157
Query 306 CAGTACCTTTACAAGCTTCCTACCTCCCCTGAGTTTCTCTTCACGGAGGAGGCT-TTAAG 364
||||| || ||||||||||| || || || || |||||||||||||| ||| || | ||
Sbjct 158 CAGTATCTATACAAGCTTCCGACTTCTCCGGAATTTCTCTTCACGGAAGAGTCTCTCAA- 216
Query 365 GCAACGTAGATCTTGGGGTGAGAATCTCACTTTCTACACCGGAACAGCTTACCTCGGTGG 424
|| ||| |||| ||||| || ||||||||||||||||| ||||| | ||| ||||| ||
Sbjct 217 ACAGCGTCGATCATGGGGAGAAAATCTCACTTTCTACACAGGAACGGGTTATCTCGGCGG 276
Query 425 CTCCGTTGCCGGAGCTTCTG-TTGGAGTCATCACTGG-AGTCAAAAGCTTCGAATCTGGC 482
||| || ||||| ||| | | | ||| || || | || | |||| || |||||| |||
Sbjct 277 CTCTGTAGCCGGCGCTGCAGCTGGGA-TCTTCTCCGGTA-TCAAGAGTTTCGAAAATGGA 334
Query 483 GACACTACTAAGCTCAAAATCAACAGGATCTTGAACTCTTCTGGTCAAACTGGTCGAACT 542
||||| || ||||| |||||||||||||| ||||| || |||||||| | ||||| |||
Sbjct 335 GACACGACGAAGCTGAAAATCAACAGGATTTTGAATTCGTCTGGTCAGGCAGGTCGCACT 394
Query 543 TGGGGTAATCGGATTGGTATCATTGGATTGGTTTACGCAGGGATCGAGAGTGGTATTGTG 602
||||||||| ||||||| || |||| ||| | ||||||||||| ||||||||| |||||
Sbjct 395 TGGGGTAATAGGATTGGGATTGTTGGGTTGATCTACGCAGGGATTGAGAGTGGTGTTGTG 454
Query 603 GCTGCCACGGAT-AGAGATGATGTTTGGACCAGTGTGGTGGCTGGTCTTGGAACCGGAGC 661
|| | || ||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 455 GCGGTAACTGATAAG-GATGATGTTTGGACCAGTGTGGTGGCTGGTCTTGGAACGGGAGC 513
Query 662 TGT-TTGTAGAGCGGCGA-GAGGAGTGAGATCTGCAGCTGTAGCTGGTGCTCTTGGTGGA 719
|| || ||| || || | |||||||||||||||| ||||| ||||||||| |||| |||
Sbjct 514 GGTCTT-TAGGGCAGC-ACGAGGAGTGAGATCTGCGGCTGTGGCTGGTGCTTTTGGCGGA 571
Query 720 CTTGCGGCTGGAGCTGTTGTAGCTGGGAAGCAAATTGTGAAGCGGTATG-TGCCCATTTG 778
|||||||||| || ||||| || |||||||| || | |||||||||| | | ||| ||
Sbjct 572 ATTGCGGCTGGTGCGGTTGTGGCGGGGAAGCAGGTTTTCAAGCGGTATGCT-CACATATG 630
Query 779 AAGA 782
||||
Sbjct 631 AAGA 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43269510795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5