BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72760.1
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476413 jgi|Araly1|476413|fgenesh2_kg.2__1543__AT1G72760.1 3278 0.0
> Ahg476413 jgi|Araly1|476413|fgenesh2_kg.2__1543__AT1G72760.1
Length=2124
Score = 3278 bits (1775), Expect = 0.0
Identities = 1994/2100 (95%), Gaps = 13/2100 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGCAAGAAGAGTTAGAAGGACCTCGGAGGACTATGGCAGTATCACGGCGATCGCC 60
|||| |||||||||||| ||| ||||||||| ||||||||||| ||||||||||| |||
Sbjct 1 ATGTATGCAAGAAGAGTAAGAGGGACCTCGGCGGACTATGGCACAATCACGGCGATTGCC 60
Query 61 ATTGATAAGGACAAGAACAGCCAACACGCCTTGAAATGGGCCGTTGAAAATATTGTTGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 61 ATTGATAAGGACAAGAACAGCCAACACGCCTTGAAATGGGCCGTTGAAAATATCGTTGTT 120
Query 121 GATGCTCCACAATGTGTCCTTATCCACGTTCAACTAGGAGACACAGGAGGACATTTTCAT 180
||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 121 GATACTCCACAATGTGTCCTTCTCCACGTTCAACTGGGAAACACAGGAGGACATTTTCAT 180
Query 181 CAGGACAATCCGGACGAGGCACATGAATTCTTTCTTCCTTTCAGAGGATTCTGCGCTCGA 240
|||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CAGGACAATCAGGACGAGGCGCATCAATTCTTTCTTCCTTTCAGAGGATTCTGCGCTCGA 240
Query 241 AAAGGAATCATAGCAAAAGAGGTTATTCTTCATGATATTGACATCTCCAATGCTATTGTC 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGGAATCATAGCAAAGGAGGTTATTCTTCATGATATTGACATCTCCAATGCTATTGTC 300
Query 301 AACTACATCACCAACAATTATTACATTGCAAATCTTGTTGTTGGCGCATCTGCACGCAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACTACATCACCAACAATTATTACATTGCAAATCTTGTTGTTGGCGCATCTGCACGCAAT 360
Query 361 TCCTTCCTTAAAAAGTTTCAGAGTCCAGATGTACCAACCACTCTGCTTAAGACGACTCCA 420
|||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 TCCTTCCTCAAAAAGTTTAAGAGTCCAGATGTACCAACCACTCTGCTTACGACGACTCCA 420
Query 421 GAGACTTGTGCCGTCTTTGTTGTGACCAAAGGTAAGCTTTTAAAAAGCAGATCCGCGAGT 480
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GAGACTTGTGCTGTCTTTGTTGTGACCAAAGGTAGGCTTTTAAAAAGCAGATCCGCGAGT 480
Query 481 CACCGTCATAAACTTTCCAGACAACAAAATCTCTCTTCTTTGTTGTACAACTCAACAA-- 538
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 CACCCTCATAAACTTTCCAGACAACAAAATCTCTCTTCTTTGTTGTATAACTCAACAAGC 540
Query 539 -AC---TCCATTGACTCTGACAGCGCATCAATATCATCACCTGTATCTACACAAACCAAC 594
| |||| ||||||||| || | |||| |||||||||||||||||||||||||||||
Sbjct 541 TCCGTTTCCAATGACTCTGATAGGGAATCATTATCATCACCTGTATCTACACAAACCAAC 600
Query 595 AAACCAAATTCAAATTTTTTCCAACCTAATTCACCTCGCATCTCAACACCGCAATCTATG 654
|||||||||||| |||| |||||||| |||||||||||||| ||| |||||| |||||||
Sbjct 601 AAACCAAATTCAGATTTCTTCCAACCCAATTCACCTCGCATATCACCACCGCCATCTATG 660
Query 655 AGTGAAATCTCTCAGTCAGAGACTGACAATGGAAGTTGTGATATGGTATCAACTGTGAGT 714
||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct 661 AGTGAGATCTCTCAGTCAGAGACTGATAATGGCAGTAGTGATATGGTATCAACTGTGAGT 720
Query 715 TCTTACACCGTCTCTGATAGTTCCACTACCATCGGAAGCTCGATCTCTTCAACTTCCACG 774
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 721 TCTTACACCGTCTCTGAAAGTTCCACTACCATCGGAAGCTCGATCTCTTCAACGTCAACG 780
Query 775 GAAAGTCCACTTGTC-GGAAATTACGTGGAACAACAGAATCAAAATCTTGAAGCAGAGGT 833
|||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 GAAAGTCCACATG-CGGGAAATTTCGTGGAACAACAGAATCAAAATCTTGAAGCAGAGGT 839
Query 834 GAGGAGACTGAGACTGGAATTGAAGCAGTTTAACAAGGACAAAGACACTACAAACCAAAA 893
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 840 GAGGAAACTGAGACTGGAATTGAAGCAGTTTAAGATGGACAAAGACACTACAAACCAAAA 899
Query 894 AGAAAACTCCCAAGAAACCCCATGGTCAGATGAAAAAATAGAGCTGCCTAGAGCATTGTC 953
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 CGAAAACTCCCAAGAAAGCCCAAGGTCAGATGAAAAAATAGAGCTGCCTAGAGCATTGTC 959
Query 954 TGATAGGGAAACGCAGAAAACGCAGTCTGCTGCATTCCAAGCAGCTGAAATAGCAAAGCG 1013
||| ||||||| |||||||| |||| | ||||| ||||||| |||||||||||||||||
Sbjct 960 TGAGAGGGAAAAGCAGAAAAAGCAG--T-CTGCAATCCAAGCCGCTGAAATAGCAAAGCG 1016
Query 1014 CATAGCGAAAATGGAGAGCCAAAAGAGAAGATTACTTGAGATGCAAGCCAATTTGGACAA 1073
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1017 CATAGCGAAAATGGAGAGCCAAAAGATAAGATTACTAGAGATGCAAGCCAATTTGGACAA 1076
Query 1074 ACAGATGATGTTCACAACGGTTTCTTACAGACGTTATAGTATCAAAGATGTTGAAGATGC 1133
||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1077 ACAGAAGATGGTCACTACGGTGTCTTACAGACGTTATAGTATCAAAGATGTTGAAGGTGC 1136
Query 1134 AACCTATGGTTTTTCTGATGCTCTAAAGATTGGGGAAGGAGGTTATGGACCTGTTTACAA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AACCTATGGTTTTTCTGATGCTCTAAAGATTGGGGAAGGAGGTTATGGACCTGTTTACAA 1196
Query 1194 AGCTGTCCTCGATTACACTTCTGTCGCCATTAAAATCTTGAAGTCGGGTATCACAGAGGG 1253
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AGCTGTTCTCGATTACACTCCTGTCGCCATTAAAATCTTGAAGTCGGGTATCACAGAGGG 1256
Query 1254 ACTGAAACAGTTCCAACAAGAGATTGAGGTTCTTAGTAGCATGAGGCACCCTAATATGGT 1313
||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1257 ACTAAAACAGTTCCGACAAGAGATTGAGGTTCTGAGTAGCATGAGGCACCCTAATATGGT 1316
Query 1314 AATCCTTCTCGGTGCATGTCCCGAGTATGGTTGTCTTGTATATGAGTATATGGAAAATGG 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GATCCTTCTCGGTGCATGTCCCGAGTATGGTTGTCTTGTATATGAGTATATGGAAAATGG 1376
Query 1374 AACACTCGAAGATCGCCTCTTCTGCAAAAACAACACACCCCCACTTTCATGGAGAGCAAG 1433
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1377 AACACTTGAAGATCGCCTCTTCTGCAAAAACAATACACCCCCACTTTCATGGAGAGCAAG 1436
Query 1434 GTTCAGAATCGCTTCTGAGATTGCCACAGGTCTTCTTTTCCTTCACCAGGCAAAACCTGA 1493
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1437 ATTCAGAATCGCTTCTGAGATTGCCACAGGACTTCTTTTCCTTCACCAGGCAAAACCTGA 1496
Query 1494 GCCCCTAGTTCACCGTGATCTGAAGCCAGCAAACATTCTACTCGATAAACATCTCACTTG 1553
|||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1497 GCCCTTAGTTCATCGTGATCTGAAGCCAGCAAACATTCTACTTGATAAACATCTCACTAG 1556
Query 1554 CAAAATCAGTGATGTCGGTCTAGCTCGCTTGGTACCT-CCTGCTGTGGCTGATACCTACA 1612
||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |||||
Sbjct 1557 CAAAATCAGTGATGTCGGTCTAGCTCGCTTGGTACCTCCCT-CTGTGTCTGATAGCTACA 1615
Query 1613 GTAACTATCACATGACTTCTGCAGCCGGTACATTTTGTTACATTGACCCTGAGTATCAGC 1672
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GTAACTATCACATGACCTCTGCAGCCGGTACATTTTGTTACATTGACCCTGAGTATCAGC 1675
Query 1673 AAACCGGAATGCTTGGAGTGAAATCTGACCTCTATTCTTTTGGTGTGGTGCTACTGCAAA 1732
||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct 1676 AAACCGGAATGCTTGGAGTGAAATCTGACGTCTACTCTTTTGGTGTGGTGCTTCTGCAAA 1735
Query 1733 TCATAACAGCCCAACCAGCAATGGGGTTAGGCCATAAAGTAGAGATGGCGGTTGAAAATA 1792
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1736 TCATAACAGCCCAACCAGCAATGGGGTTAGGCCATAAAGTAGAGATGGCTATTGAAAATA 1795
Query 1793 ATAATCTGAGAGAAATTTTGGATCCAACAGTATCAGAATGGCCTGAAGAAGAGACTCTGG 1852
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1796 ATAATCTGAGAGAAATTTTGGATCCAACTGTATCAGAATGGCCTGAAGAAGAGACTCTGG 1855
Query 1853 AGTTGGCTAAATTGGCTTTACAATGTTGTGAACTGAGGAAAAAGGACAGACCTGATCTTG 1912
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 1856 AGTTGGCTAAATTGGCTTTGCAGTGTTGTGAACTGAGGAAAAAGGATAGACCTGATCTTG 1915
Query 1913 CCTTAGTTCTGTTACCAGCTCTGAACAGGCTTAAAGAGTTTGCAACAGAGGATCATGAAC 1972
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1916 CCTTAGTTCTGTTACCAGCTCTGAACAGGCTTAAAGAGTTTGCTACAGAGGATCATGAAC 1975
Query 1973 GTATTCAGGATAGAACATCTCATGTGTCACATGAACACAATTCAGTTCCGCTTTCCCCGA 2032
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1976 GTATTCAGGATAGAACATCTCATGTGTCACATGAACACAATTCAGTTCCACTTTCCCCGA 2035
Query 2033 TTCCTTCCTCTCAGGTTAGTTTCTTAGAACCATTCTTTTTAAGGGATATTAGCTGCAAAT 2092
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 2036 TTCCTTCCTCTCAGGTTAGTTTCTTAGAACCGTTCTTTTTAAGGGATCTTAGCTGCAAAT 2095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78770626660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5