BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72790.1
Length=2053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476416 jgi|Araly1|476416|fgenesh2_kg.2__1546__AT1G72790.1 2601 0.0
> Ahg476416 jgi|Araly1|476416|fgenesh2_kg.2__1546__AT1G72790.1
Length=1967
Score = 2601 bits (1408), Expect = 0.0
Identities = 1681/1810 (93%), Gaps = 30/1810 (2%)
Strand=Plus/Plus
Query 93 AGAAAGAGTATGGAAGAAGATGATGGAGACGCGTCTACGCCGTTTTGGCTTCAATCACGC 152
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 43 AGAAAGAGTATGGAAGAAGAAGATGGAGACGCGTCTACGCCGTTTTGGCTTCAATCACGC 102
Query 153 CGCAATAACACTTACTTCCGCCGCACTGCAAGTCTCGGTGGCCGTACAACCACCATCGCC 212
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 103 CGCAATAACACTTACTTCCGCCGCACTGCAAGTCTCGGCGGCCGTGCAACCACCGTCGCC 162
Query 213 ACTCAAATATTCTTCGCCGGAACAGCTGCAATCCTCATAGTCGTCTTCATTATCCCTCCT 272
|||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||
Sbjct 163 ACTCAAATATTCTTCGCCGGGACAGCTGCAATCCTTATAGTCTTCTTCATTATCCCTCCT 222
Query 273 TTCTTCTCCTCTGTTTCTC-AGATTTTCCGACCTCATTTAGTCCGTAAAAGCTGGGATTA 331
|||| ||||||||||| | || |||||||||||||||| ||||||||||||||||||||
Sbjct 223 CTCTTTTCCTCTGTTTCACAAG-TTTTCCGACCTCATTTGGTCCGTAAAAGCTGGGATTA 281
Query 332 TCTCAACTTCGTTCTCGTCCTTTTCGCCGTCCTTTGCGGCTTCCTCAGCCGCAACACCAA 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TCTCAACTTCGTTCTCGTCCTTTTCGCCGTCCTTTGCGGCTTCCTCAGCCGCAACACCAA 341
Query 392 TAATGACGAATCCAATCATCACAAAGAAGAAGACATTCGTAACAAATTCTCGA-CTTCAC 450
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||| || |||
Sbjct 342 TAATGACGAAACCAATCATAACAAAGAAGAAGACATTAGTAACAAATTCTCGAACT-CAC 400
Query 451 CATCGATTATTGATCGAAGAAGTCGTGTATCTAACAGTGGTACAACGCCGCGTTATTGGA 510
| ||||| || |||||| || |||||||||||||||||| || |||| ||||||||||
Sbjct 401 CTTCGATCATCGATCGAGGAGGTCGTGTATCTAACAGTGC--CA-CGCCTCGTTATTGGA 457
Query 511 ACGATGATCGCGGTGGTGGCGGCGGTGATCAAACGGTGTACAAGAGGTTTAGTAGATTAC 570
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 458 TCGATGATCGCGGTGGTGGCGGCGGTGATCAGACGGTGTACAAGAGGTTTAGTAGATTAC 517
Query 571 GAAGTGTTAGCTCGTATCCAGATCTGAGGCTCCGGGAATACGAAGCCGATGAACGGTGGA 630
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GGAGTGTTAGCTCGTATCCAGATCTGAGGCTCCGGGAATACGAAGCCGATGAACGGTGGA 577
Query 631 GATTCTACGATGATACACGTGTAAGTCAATGCCGTTATGAAGATGTAGATCCGATCTATC 690
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 578 GATTTTACGATGATACACGTGTAAGTCAATGTCGTTACGAAGATGTAGATCCGATCTATC 637
Query 691 CAAATCAAAGTTACAGAAACTGGCATGAGGAAGGTAAACCACCGCCGGAAGATGTAGATC 750
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 638 CAAATCAAAGTTACAGAAACTGGCAAGAGGAAGTTAAACCACCGCCGGAAGATGTAGATC 697
Query 751 AAACAGAGGACGGTGATAATGGAGAAGGAAGTAAGGTCCGTAACGGCGGTTCGGAAACTG 810
||||||||||||||| ||||| || |||| | ||||||| || |||||||| |||||||
Sbjct 698 AAACAGAGGACGGTGGTAATGAAGGAGGAGGAAAGGTCCATAGCGGCGGTTTTGAAACTG 757
Query 811 AGAAAGTTGAGGTGGTTGCGACGGCGGAAGCTGAAGTAGTAGAAGAGCTAAAAGTGCCTT 870
||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 758 AGAAAGTTGAGGTCGTTGAGACGGCGGAAGCTGAAGTAGTTGAAGAGCTAACAGTGCCTT 817
Query 871 CTGCTCCGCCGTATATTCCGTCTCCTCCGCCGTCTCCGCCACGTCCTCCACCAGCGAAGC 930
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 818 CTGCTCCGCCGTATATTCCGTCTCCTCCGCCGTCTCCGCCACGTCCTCCACCACCTAAGC 877
Query 931 AAGCGAAGAGAAAGACTAATAGAGTGTACCAAGATGTTTCTCCACAGGAAGAGAAGAAAG 990
|||||||||| |||||||| |||||||||||||||||| ||||| |||||||||| || |
Sbjct 878 AAGCGAAGAGGAAGACTAAAAGAGTGTACCAAGATGTTCCTCCAAAGGAAGAGAATAATG 937
Query 991 AAAGAGATGATTTTGTAGCGACGACGACG----C-C-GATTCCACCTCCGGCGACTGTGT 1044
| |||| ||||||||||||| ||||| || | | |||||||||||||||||||||||
Sbjct 938 AGAGAGGTGATTTTGTAGCGGCGACGCCGATGACTCCGATTCCACCTCCGGCGACTGTGT 997
Query 1045 ATCAAAAGAGCAATAAACAGGAGAAGAAGAAAGGAGGAGCAACGAAAGACTTTCTGATTG 1104
|||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||
Sbjct 998 ATCAAAAGAGCAATAAACAGGAGAAGAAGAAAGGCGGAGCAACTAAGGATTTTCTGATTG 1057
Query 1105 CGTTACGGAGAAAGAAGAAGAAGCAGAGACAACAGAGCATCGATGGCCTCGATCTCCTCT 1164
|||||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 1058 CGTTACGGAGGAAGAAGAAGAAGCAGAGACAACAGAGCATCGATGGACTCGATTTACTCT 1117
Query 1165 TCGGCTCCGATCCTCCATTGGTCTATTCACCACCACCGCCGCCGCCTCCTCCACCACCTT 1224
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1118 TCGGCTCCGATCCTCCATTGGTCTATTCACCACCACCGCCGCCTCCGCCTCCACCACCTT 1177
Query 1225 TCTTCCAAGGGCTTTTCTCATCCaaaaaaggtaaaagcaaaaaaaaCAATTCAAATCCAC 1284
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1178 TCTTCCAAGGGCTATTCTCATCCAAAAAAGGTAAAGGCAAAAAAAACAATTCAAATCCAC 1237
Query 1285 CGCCTCCTCCTCCTCCACCACCACCTGAACGGAGATATGAATCACGCGCATCAACCTCGA 1344
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1238 CGCCTCCTCCTCCTCCGCCACCACCTGAACGGGGATATGAATCACGCGCATCAATGACGA 1297
Query 1345 AGCTCCGAAAAGCTCCGGTGGAATCACGGACATCCAAACCAAATCCGCCAGCTAAAGTAA 1404
|| | || |||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1298 AGATTCGGAAAGCTCCGGTGGAATCACGGACATCTAAACCAAATCCGCCAGCTAGAGTAA 1357
Query 1405 CTCAATACGTAGGCACAGGAAGCGAATCACCACTAATGCCGATCCCGCCGCCGCCTCCTC 1464
|||||| ||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 1358 CTCAATTCGTAGGCACAGGAAGCGAATCGCCATTGATGCCGATCCCGCCGCCGCCTCCTC 1417
Query 1465 CTCCGCCGTTTAAAATGCCGGCTTGGAAATTCGTGAAGCGTGGAGATTACGTCAGGATGG 1524
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CCCCGCCGTTTAAAATGCCGGCTTGGAAATTCGTGAAGCGTGGAGATTACGTCAGGATGG 1477
Query 1525 CTAGTGACATCAGCATAAGCTCCGACGAACCTGATGATCCGGATGTAGCTCAATCAGCTG 1584
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 1478 CTAGTGACATCAGCATAAGCTCCGACGAACCCGATGATCCCGACGTAGCTCAATCAGCTG 1537
Query 1585 GAAG-TAAGGAGGCCGCCGGGAGTATGTTCTGTCCGAGCCCCGACGTAGATACCAAAGCC 1643
||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1538 -AAGGTAAGGTCGCCGCCGGGAGTATGTTCTGTCCAAGCCCCGACGTAGATACCAAAGCC 1596
Query 1644 GATGATTTCATCGCAAGATTCAGAGCCGGACTCAAATTGGAGAAGATGAACTCTGTGAAA 1703
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1597 GATGATTTCATCGCCAGATTCAGAGCTGGACTCAAATTGGAGAAGATGAACTCTGTGAAA 1656
Query 1704 AGAGGGAGATCCAATTTAGGACCCGAACCCGGACTTCATGAATCCGGATCTTCA-A--CG 1760
|||||||||||||||||||||||||||||||||||| |||||||||| |||| | | ||
Sbjct 1657 AGAGGGAGATCCAATTTAGGACCCGAACCCGGACTTAATGAATCCGGGTCTTAATAAACG 1716
Query 1761 GGT--T----ATAGGCCCAGCCCAAGCGTATAGAGGCTATTTCTTTTAGATTTTGGATTT 1814
||| | ||||||| ||||||||||||||| || |||||||||| ||||||| ||||
Sbjct 1717 GGTAGTGGTTATAGGCCTAGCCCAAGCGTATAGTGGTTATTTCTTTTGGATTTTGCATTT 1776
Query 1815 TTGGATTACTACTGTGTTGGttttttttACCTTACTTTTGTTTAGACTTTCTTATACGTA 1874
||||||||| |||||||||| ||||| ||| ||||||||||| | |||||||||||||
Sbjct 1777 TTGGATTAC-ACTGTGTTGGGTTTTT---CCT-ACTTTTGTTTA-ATTTTCTTATACGTA 1830
Query 1875 ATTTTGTGGT 1884
||||||||||
Sbjct 1831 ATTTTGTGGT 1840
Score = 62.1 bits (33), Expect = 2e-08
Identities = 39/42 (93%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 22 AACACATTACAGCATCGTAAGCCAACCACTCTTAAACTAAAA 63
||||||||||||||||||||||||||||||| || ||||||
Sbjct 1 AACACATTACAGCATCGTAAGCCAACCACTCCCAAGCTAAAA 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208926615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5