BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72800.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926644 jgi|Araly1|926644|scaffold_202205.1 599 2e-170
Ahg908890 jgi|Araly1|908890|Al_scaffold_0002_1971 195 9e-49
> Ahg926644 jgi|Araly1|926644|scaffold_202205.1
Length=838
Score = 599 bits (324), Expect = 2e-170
Identities = 357/373 (96%), Gaps = 2/373 (1%)
Strand=Plus/Plus
Query 704 CAAGCCAGCTGCTAA-AGATTCTTTATTTTCTGTTGGTGTCAATGGTCGATCGTTCTCTG 762
||||||||||||||| | |||||||||| |||||||||| |||||||| |||| ||||||
Sbjct 464 CAAGCCAGCTGCTAATA-ATTCTTTATTCTCTGTTGGTGGCAATGGTCAATCGATCTCTG 522
Query 763 TTACGGGATTTGACGCTTCCCTTCCTGTGGATGATATAAAGAGCGCATTGAGTAAATATT 822
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 523 TTACGGGATTTGACTCTTCCCTTCCTGTGGATGATATCAAGAGCGCATTGAGTAAATATT 582
Query 823 TCAGTTCTTTTGGGGAGATCACACGCGTATTTGTTCCCCCAAGCCACGGAACCGGTGGTT 882
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TCAGTTCTTTTGGAGAGATCACACGCGTATTTGTTCCCCCAAGCCACGGAACCGGTGGTT 642
Query 883 CCTTAGGATATGCTTACATTGATCTGAAAGAAGGAGCAGAGAAGGCGTTGGAACTTGGTA 942
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 643 CCTTAGGATATGCTTACGTTGATCTGAAAGAAGGAGCAGACAAGGCGTTGGAACTTGGTA 702
Query 943 GACATGACGTGGGAGGATGGGATCTTGTAGTTGGTAAGGCTGAACCGATTCGCAGTGGAA 1002
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 703 CACATGACGTGGGAGGATGGAATCTTGTAGTTGGTAAGGCTGAACCGATACGCAGTGGAA 762
Query 1003 GTACTTGGCCTTTTCCTGGCCGTTGTGGTAATCAGGGCCGTTGTACCTTCTGTTGAAGGC 1062
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 763 GTACTTGGCCTTTTCCTGGCCGTTGTGGCAATCAGGGCCGTTGTACCTTCTGTTGAAGGC 822
Query 1063 TTGAACCTTTGGT 1075
||||| |||||||
Sbjct 823 TTGAAGCTTTGGT 835
Score = 475 bits (257), Expect = 3e-133
Identities = 313/339 (92%), Gaps = 8/339 (2%)
Strand=Plus/Plus
Query 160 AGATCACGAAAGTATCCGTCTTGAAAAACCTTGATG-AGAAGGAGATGATCAAAGAATTC 218
|||||||||||| || |||| ||||||| |||| | |||||||||||||||||||||||
Sbjct 166 AGATCACGAAAGGATTCGTCAGGAAAAACTTTGA-GAAGAAGGAGATGATCAAAGAATTC 224
Query 219 GCTGATCGTCTTCAGCGTCTCGAAGCAAAGGTGGATTTGTTGGTAACAAAGGCGGATTTG 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 GCTGATCGTCTTCAGCGTCTCGAAGCAAAGGTGGATTTGTTGGTAACAAAGGCGGATTTG 284
Query 279 TTGGCAATAAAGGCGGATATACAGGAGCTTCTCATCTCAGCCAAGGGTGAGAAAGTTCCT 338
||||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 285 TTGGCAACAAAGGCGGATATACAGGAGCTTTTCATCCCAGCCAAGTGTGAGAAAGTTCCT 344
Query 339 GCCATGAAG--ACTTCTGCTAAGGCTTCTTCTGAGAGCGATGACTCATACATGGACACTT 396
||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 345 GCCATGAAGCCACTT--GCTAAGGCTGCTTCTGACAGCGATGACTCATACATGGACACTT 402
Query 397 CTTCGGAGGATGAATCGTCTTCTGCTGAGGAACCTGTAAACAAACCTGCTGCAAGTGCCG 456
|||||||||||||||| ||||||| |||||||| || ||| |||||||||||||||||||
Sbjct 403 CTTCGGAGGATGAATCATCTTCTGGTGAGGAACTTGCAAAGAAACCTGCTGCAAGTGCCG 462
Query 457 CCAAGCCAGCTACTAA-AGATTCTTTATTCTCTGCTGGT 494
||||||||||| |||| | ||||||||||||||| ||||
Sbjct 463 CCAAGCCAGCTGCTAATA-ATTCTTTATTCTCTGTTGGT 500
> Ahg908890 jgi|Araly1|908890|Al_scaffold_0002_1971
Length=609
Score = 195 bits (105), Expect = 9e-49
Identities = 126/136 (93%), Gaps = 1/136 (1%)
Strand=Plus/Plus
Query 912 GAA-GGAGCAGAGAAGGCGTTGGAACTTGGTAGACATGACGTGGGAGGATGGGATCTTGT 970
||| |||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct 474 GAATGGAGCAGAAAAGGCGTTGGAACTTGGTACACATGTCGTGGGAGGATGGAATCTTGT 533
Query 971 AGTTGGTAAGGCTGAACCGATTCGCAGTGGAAGTACTTGGCCTTTTCCTGGCCGTTGTGG 1030
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 534 AGTTGGTAAGGCTGAACCGATACGCAGTGGAAGTACTTGGCCTTTTCCCGGCCGCTGTGG 593
Query 1031 TAATCAGGGCCGTTGT 1046
||||| |||||||||
Sbjct 594 CAATCAAGGCCGTTGT 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5