BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72800.1 Length=1285 Score E Sequences producing significant alignments: (Bits) Value Ahg926644 jgi|Araly1|926644|scaffold_202205.1 599 2e-170 Ahg908890 jgi|Araly1|908890|Al_scaffold_0002_1971 195 9e-49 > Ahg926644 jgi|Araly1|926644|scaffold_202205.1 Length=838 Score = 599 bits (324), Expect = 2e-170 Identities = 357/373 (96%), Gaps = 2/373 (1%) Strand=Plus/Plus Query 704 CAAGCCAGCTGCTAA-AGATTCTTTATTTTCTGTTGGTGTCAATGGTCGATCGTTCTCTG 762 ||||||||||||||| | |||||||||| |||||||||| |||||||| |||| |||||| Sbjct 464 CAAGCCAGCTGCTAATA-ATTCTTTATTCTCTGTTGGTGGCAATGGTCAATCGATCTCTG 522 Query 763 TTACGGGATTTGACGCTTCCCTTCCTGTGGATGATATAAAGAGCGCATTGAGTAAATATT 822 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 523 TTACGGGATTTGACTCTTCCCTTCCTGTGGATGATATCAAGAGCGCATTGAGTAAATATT 582 Query 823 TCAGTTCTTTTGGGGAGATCACACGCGTATTTGTTCCCCCAAGCCACGGAACCGGTGGTT 882 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 583 TCAGTTCTTTTGGAGAGATCACACGCGTATTTGTTCCCCCAAGCCACGGAACCGGTGGTT 642 Query 883 CCTTAGGATATGCTTACATTGATCTGAAAGAAGGAGCAGAGAAGGCGTTGGAACTTGGTA 942 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 643 CCTTAGGATATGCTTACGTTGATCTGAAAGAAGGAGCAGACAAGGCGTTGGAACTTGGTA 702 Query 943 GACATGACGTGGGAGGATGGGATCTTGTAGTTGGTAAGGCTGAACCGATTCGCAGTGGAA 1002 ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 703 CACATGACGTGGGAGGATGGAATCTTGTAGTTGGTAAGGCTGAACCGATACGCAGTGGAA 762 Query 1003 GTACTTGGCCTTTTCCTGGCCGTTGTGGTAATCAGGGCCGTTGTACCTTCTGTTGAAGGC 1062 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 763 GTACTTGGCCTTTTCCTGGCCGTTGTGGCAATCAGGGCCGTTGTACCTTCTGTTGAAGGC 822 Query 1063 TTGAACCTTTGGT 1075 ||||| ||||||| Sbjct 823 TTGAAGCTTTGGT 835 Score = 475 bits (257), Expect = 3e-133 Identities = 313/339 (92%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 160 AGATCACGAAAGTATCCGTCTTGAAAAACCTTGATG-AGAAGGAGATGATCAAAGAATTC 218 |||||||||||| || |||| ||||||| |||| | ||||||||||||||||||||||| Sbjct 166 AGATCACGAAAGGATTCGTCAGGAAAAACTTTGA-GAAGAAGGAGATGATCAAAGAATTC 224 Query 219 GCTGATCGTCTTCAGCGTCTCGAAGCAAAGGTGGATTTGTTGGTAACAAAGGCGGATTTG 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 GCTGATCGTCTTCAGCGTCTCGAAGCAAAGGTGGATTTGTTGGTAACAAAGGCGGATTTG 284 Query 279 TTGGCAATAAAGGCGGATATACAGGAGCTTCTCATCTCAGCCAAGGGTGAGAAAGTTCCT 338 ||||||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct 285 TTGGCAACAAAGGCGGATATACAGGAGCTTTTCATCCCAGCCAAGTGTGAGAAAGTTCCT 344 Query 339 GCCATGAAG--ACTTCTGCTAAGGCTTCTTCTGAGAGCGATGACTCATACATGGACACTT 396 ||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 345 GCCATGAAGCCACTT--GCTAAGGCTGCTTCTGACAGCGATGACTCATACATGGACACTT 402 Query 397 CTTCGGAGGATGAATCGTCTTCTGCTGAGGAACCTGTAAACAAACCTGCTGCAAGTGCCG 456 |||||||||||||||| ||||||| |||||||| || ||| ||||||||||||||||||| Sbjct 403 CTTCGGAGGATGAATCATCTTCTGGTGAGGAACTTGCAAAGAAACCTGCTGCAAGTGCCG 462 Query 457 CCAAGCCAGCTACTAA-AGATTCTTTATTCTCTGCTGGT 494 ||||||||||| |||| | ||||||||||||||| |||| Sbjct 463 CCAAGCCAGCTGCTAATA-ATTCTTTATTCTCTGTTGGT 500 > Ahg908890 jgi|Araly1|908890|Al_scaffold_0002_1971 Length=609 Score = 195 bits (105), Expect = 9e-49 Identities = 126/136 (93%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 912 GAA-GGAGCAGAGAAGGCGTTGGAACTTGGTAGACATGACGTGGGAGGATGGGATCTTGT 970 ||| |||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| Sbjct 474 GAATGGAGCAGAAAAGGCGTTGGAACTTGGTACACATGTCGTGGGAGGATGGAATCTTGT 533 Query 971 AGTTGGTAAGGCTGAACCGATTCGCAGTGGAAGTACTTGGCCTTTTCCTGGCCGTTGTGG 1030 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 534 AGTTGGTAAGGCTGAACCGATACGCAGTGGAAGTACTTGGCCTTTTCCCGGCCGCTGTGG 593 Query 1031 TAATCAGGGCCGTTGT 1046 ||||| ||||||||| Sbjct 594 CAATCAAGGCCGTTGT 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48034875420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5