BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72810.1
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316241 jgi|Araly1|316241|fgenesh1_pm.C_scaffold_2001274 2396 0.0
Ahg491774 jgi|Araly1|491774|fgenesh2_kg.7__1207__AT4G29840.1 761 0.0
> Ahg316241 jgi|Araly1|316241|fgenesh1_pm.C_scaffold_2001274
Length=1560
Score = 2396 bits (1297), Expect = 0.0
Identities = 1476/1562 (94%), Gaps = 13/1562 (1%)
Strand=Plus/Plus
Query 25 ATGGCCTCATTCTCTCTTCC-CCACTCCGCCACCTACTTTCCTTCCCACTCTGAAACCTC 83
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCTCATTCTCTC-TCCTCCACTCCGTCACCTACTTTCCTTCCCACTCTGAAACCTC 59
Query 84 ACTTAAACCTCACTCCGCCGCTTCCTTCACCGTCCGTTGCA---------CCTCCGCCTC 134
|||||||||| ||||||||||||||||||||||||| |||| ||||||||||
Sbjct 60 ACTTAAACCTTACTCCGCCGCTTCCTTCACCGTCCGCTGCACCTCCTCCGCCTCCGCCTC 119
Query 135 TCCCGCCGTTCCTCCACAGACTCCACAGAAACCCCGTCGTTCACCCGATGAGAACATTCG 194
|||||||||||||||||| ||||| ||||||| ||| ||||| ||||| |||||||||||
Sbjct 120 TCCCGCCGTTCCTCCACAAACTCCGCAGAAACACCGCCGTTCCCCCGAAGAGAACATTCG 179
Query 195 AGACGAAGCTCGTCGCCGTCCTCATCAACTCCAAAACCTCTCCGCACGTTACGTCCCTTT 254
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 AGACGAAGCTCGTCGCCGTCCTCATCAACTCCAAAACCTCTCCGCACGCTACGTCCCTTT 239
Query 255 CAACGCTCCACCTTCTTCAACAGAATCCTACTCCCTCGACGAGATCGTCTACCGTTCACA 314
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CAACGCTCCACCTTCTTCAACCGAATCCTACTCCCTCGACGAGATTGTCTACCGTTCACA 299
Query 315 ATCCGGTGCTCTCCTCGACGTCCAGCATGATTTCGCCGCCTTGAAACGCTACGACGGAGA 374
|||||||| ||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 300 ATCCGGTGGTCTCCTCGATGTCCAACACGATTTCGCCGCCTTGAAACGCTACGACGGAGA 359
Query 375 ATTCTGGCGTAACCTTTTCGATTCTCGCGTCGGTAAAACAAATTGGCCGTACGGATCAGG 434
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 ATTCTGGCGTAACCTCTTCGATTCTCGCGTCGGTAAAACCAATTGGCCGTACGGATCAGG 419
Query 435 CGTGTGGTCGAAGAAAGAGTGGGTACTCCCCGAGATCGACGATGACGACATCGTCTCTGC 494
||| |||||||||||||||||||| || || |||||| |||||||||||||||| |||||
Sbjct 420 CGTTTGGTCGAAGAAAGAGTGGGTTCTTCCTGAGATCAACGATGACGACATCGTTTCTGC 479
Query 495 TTTTGAAGGAAACTCAAATCTCTTCTGGGCTGAGAGATTTGGTAAACAGTATCTGCAAAT 554
||||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TTTTGAAGGAAACTCGAATTTGTTCTGGGCTGAGAGATTTGGTAACCAGTATCTGCAAAT 539
Query 555 GAACGATCTTTGGGTGAAACATTGTGGAATCAGCCACACTGGCTCCTTTAAAGATCTGGG 614
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 540 GAACGATCTTTGGGTGAAACATTGTGGAATTAGCCACACTGGTTCGTTTAAAGATCTGGG 599
Query 615 CATGAGTGTTCTCGTTTCTCAGGTGAATCGTCTCCGGAAAATGAACAAACCAGTCATCGG 674
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CATGACTGTTCTTGTTTCTCAGGTGAATCGTCTCCGGAAAATGAACAAACCAGTCATCGG 659
Query 675 AGTTGGTTGCGCTTCTACTGGAGATACCTCCGCTGCTCTCTCTGCTTACTGTGCTTCCGC 734
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTTGGATGCGCTTCTACTGGAGATACCTCCGCTGCTCTCTCTGCTTACTGTGCTTCCGC 719
Query 735 TGGAATCCCCTCGATTGTCTTCTTACCTGCGGATAAAATCTCCATGGCTCAGCTTGTGCA 794
||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 TGGAATCCCGTCGATCGTTTTCTTACCGGCGGATAAAATCTCCATGGCTCAGCTTGTGCA 779
Query 795 GCCGATTGCAAACGGAGCGTTTGTGCTTAGTATTGACACTGATTTTGACGGATGTATGCA 854
||| ||||| || || || ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 780 GCCAATTGCTAATGGGGCTTTTGTGCTTAGTATTGATACTGATTTCGACGGATGTATGCA 839
Query 855 TTTGATCAGAGAAGTTACGGCGGAGCTTCCTATTTACTTGGCGAACTCTCTCAACAGCCT 914
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 840 TTTGATCAGAGAAGTAACGGCGGAGCTTCCGATTTACTTAGCGAACTCTCTCAACAGCCT 899
Query 915 CCGTCTCGAAGGTCAAAAGACGGCGGCGATTGAGAT-TCTGCAGCAGTTTAATTGGCAAG 973
|||||||||||| ||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct 900 CCGTCTCGAAGGACAAAAGACGGCGGCGGTTGAGATAT-TGCAGCAGTTTAATTGGCAAG 958
Query 974 TTCCTGATTGGGTCATTGTTCCTGGAGGCAATCTTGGTAACATCTATGCGTTTTACAAAG 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTCCTGATTGGGTCATTGTTCCTGGAGGCAATCTTGGTAACATCTATGCGTTTTACAAAG 1018
Query 1034 GGTTTCATATGTGTAAAGAGTTAGGTCTTGTTGATCGTATCCCTAGGCTTGTTTGTGCTC 1093
||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||
Sbjct 1019 GGTTTCATATGTGTAAAGAGTTAGGTCTTGTTGATAGAATCCCTAGACTTGTGTGTGCTC 1078
Query 1094 AAGCTGCTAATGCAAATCCACTTTACTTGCATTACAAATCTGGGTTTAAAGAAGATTTCA 1153
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 AAGCTGCTAACGCTAATCCACTTTACTTGCACTACAAATCTGGGTTTAAAGAAGATTTCA 1138
Query 1154 ATCCATTGAAAGCAAACACTACATTTGCTTCTGCTATTCAGATTGGTGACCCTGTTTCGA 1213
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1139 ATCCATTGAAAGCAAACACTACATTTGCTTCTGCGATTCAGATCGGCGACCCTGTTTCGA 1198
Query 1214 TTGATAGAGCTGTGTATGCGTTGAAGAAATCTAATGGGATTGTTGAGGAAGCTACAGAGG 1273
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1199 TTGATAGAGCTGTGTATGCGTTGAAGAAATCTAATGGCATTGTTGAGGAAGCTACTGAAG 1258
Query 1274 AAGAGTTGATGGATGCAACAGCTCTTGCTGATTCTACTGGTATGTTTATATGTCCACATA 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAGAGTTGATGGATGCAACAGCTCTTGCTGATTCTACTGGTATGTTTATATGTCCACATA 1318
Query 1334 CTGGTGTTGCATTGACGGCGTTGATGAAGCTGAGAAAGTCAGGAGTTATTGGAGCGAATG 1393
| ||||||||||||||||||||||| |||||||| ||||| |||||||| | ||||||||
Sbjct 1319 CAGGTGTTGCATTGACGGCGTTGATAAAGCTGAGGAAGTCTGGAGTTATCGAAGCGAATG 1378
Query 1394 ATCGGACTGTGGTGGTGAGTACAGCTCATGGATTGAAGTTTACACAAAGTAAGATTGATT 1453
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1379 ATCGGACTGTGGTGGTGAGTACAGCTCATGGATTGAAGTTTACGCAGAGTAAGATTGATT 1438
Query 1454 ATCATTCTAAGAACATAAAGGAGATGGCTTGTAGATTGGCGAATCCACCAGTGAAGGTTA 1513
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1439 ATCATTCTAAGAATATAAAGGAGATGGCTTGTAGATTGGCGAATCCACCGGTGAAGGTTA 1498
Query 1514 AGGCAAAGTTTGGTTCAGTTATGGATGTTCTCAAGGAGTATTTGAAGAGCAATGATAAAT 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AGGCAAAGTTTGGTTCAGTTATGGATGTTCTCAAGGAGTATTTGAAGAGCAATGATAAAT 1558
Query 1574 AA 1575
||
Sbjct 1559 AA 1560
> Ahg491774 jgi|Araly1|491774|fgenesh2_kg.7__1207__AT4G29840.1
Length=1798
Score = 761 bits (412), Expect = 0.0
Identities = 1006/1290 (78%), Gaps = 51/1290 (4%)
Strand=Plus/Plus
Query 283 TACTCCCTCGACGAGATCGTCTACCGT-TCACAATCCGGTGCTCTCCTCGACGTCCAGCA 341
||||| |||||||||||||| |||||| | | ||||||| | | || || || ||||
Sbjct 341 TACTCTCTCGACGAGATCGTGTACCGTAGC-CGCTCCGGTGGTTTGCTTGATGTTGAGCA 399
Query 342 TGATTTCGCCGCCTTGAAACGCTACGACGGAGAAT-TCTGGCGTA-ACCTTTTCGATTCT 399
||| | | || ||||| || | ||| || | | | ||||| | | || ||||||||
Sbjct 400 CGATATGGAGGCTTTGAAGCGATTCGATGGCGCGTAT-TGGCG-AGATCTCTTCGATTCG 457
Query 400 CGCGTCGGTAAAA-CAAATTGGCCGTACGGATCAGGCGTGTGGTCGAAGAAAGAGTGGGT 458
|| || ||||||| || | ||||| || ||||| || || ||||||||||||||||||||
Sbjct 458 CGTGTTGGTAAAAGCACA-TGGCCTTATGGATCGGGTGTTTGGTCGAAGAAAGAGTGGGT 516
Query 459 ACTCCCCGAGATCGACGATGACGACATCGTCTCTGCTTTTGAAGGAAACTCAAATCTCTT 518
|| || |||||||| || ||||||||||| || ||||||||||||||||| ||| | ||
Sbjct 517 TCTTCCTGAGATCGATGACGACGACATCGTTTCGGCTTTTGAAGGAAACTCGAATTTGTT 576
Query 519 CTGGGCTGAGAGATTTGGTAAACAGTATCT-GCAAATGAACGATCTTTGGGTGAAACATT 577
|||||||||||||||||||||||||| ||| | || |||| ||||| ||||||||||| |
Sbjct 577 CTGGGCTGAGAGATTTGGTAAACAGTTTCTAGGAA-TGAATGATCTGTGGGTGAAACACT 635
Query 578 GTGGAATCAGCCACACTGGCTCCTTTAAAG-ATCTGGGCATGAGTGTTCTCGTTTCTCAG 636
|||| || || || ||||| ||| ||| |||| || |||| |||| | ||| |||
Sbjct 636 GTGGGATTAGTCATACTGGAAG-TTTCAAGGATCTTGGAATGACTGTTTTGGTTAGTCAA 694
Query 637 GTGAATCGTCTCCGGAAAATGAA-CAAACCAGTCATCGGAGTTGGTTGCGCTTCTACTGG 695
|| |||||||| | |||||||| | | || || | || ||||| || ||||| || ||
Sbjct 695 GTCAATCGTCTGAGAAAAATGAAACGA-CCTGTTGTTGGTGTTGGATGTGCTTCCACCGG 753
Query 696 AGATACCTCCGCTGCTCTCTCTGCTTACTGTGCTTCCGCTGGAATCCCCTCGATTGTCTT 755
|||||| || || ||||| || ||||| ||||| || ||||||||||| |||||||| ||
Sbjct 754 AGATACTTCTGCGGCTCTATCCGCTTATTGTGCCTCTGCTGGAATCCCATCGATTGTGTT 813
Query 756 CTTACCTGCGGATAAAATCTCCATGGCTCAGCTTGTGCAGCCGATTGCAAACGGAGCGTT 815
|||||| ||| |||| ||||| ||||||||||| || |||||||| || || || |||||
Sbjct 814 CTTACCGGCGAATAAGATCTCAATGGCTCAGCTGGTTCAGCCGATAGCTAATGGTGCGTT 873
Query 816 TGTGCTT-AGTATTGACACTGATTTTGACGGATGTATGCATTTGATCAGAGAAGTTA-CG 873
||| || |||||||||||||||||||| || |||||| | |||| ||||| | || |
Sbjct 874 TGTT-TTGAGTATTGACACTGATTTTGATGGGTGTATGAAGCTGATTAGAGA-GATAACA 931
Query 874 GCGGAGCTT-CCTATTTACTTGGCGAACTC-TCTCAACAGCCTCCG-TCTCGAAGGTCA- 929
||||| || || ||||| ||||| || || | | || || | | | | ||||| ||
Sbjct 932 GCGGAA-TTGCCGATTTATTTGGCTAATTCGT-TGAATAGTTTGAGGT-TAGAAGGGCAG 988
Query 930 AAAGACGGCGGCGATTGAGATTCTGCAGCAGTTTAATTGGCAAGTTCCTGATTGGGTCAT 989
||| || || || ||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 989 AAA-ACTGCTGCTATTGAGATTCTGCAGCAGTTTGATTGGCAAGTTCCGGATTGGGTGAT 1047
Query 990 TGTTCCTGGAGGCAATCTTGGTAACATCTATGCGTTTTACAAAGGGTTTCAT-ATGTGTA 1048
|||||||||||||||||| || ||||||||||| ||||||||||| || || ||||||
Sbjct 1048 TGTTCCTGGAGGCAATCTAGGAAACATCTATGCTTTTTACAAAGGATT-CAAGATGTGTC 1106
Query 1049 AAGAGTTAGGTCTTGTTGATCGTATCCCTAGGCTTGTTTGTGCTCAAGCTGCTAATGCAA 1108
|||| | || ||||| ||| | ||||| ||| | || ||||| ||||| |||||||| |
Sbjct 1107 AAGAACTGGGACTTGTCGATAGGATCCCGAGGATGGTCTGTGCACAAGCAGCTAATGCTA 1166
Query 1109 ATCCACTTTACTTGCATTACAAATCTGGGTTTAAAGAAGATTTCAATCC-ATTGAAAGCA 1167
|||| ||||||||||| ||||| ||||| || ||| || ||||| || || || |||
Sbjct 1167 ATCCTCTTTACTTGCACTACAAGTCTGG-TTGGAAG--GACTTCAAGCCCAT-GACTGCA 1222
Query 1168 AACACTACATTT-GCTTCTGCTATTCAGATTGGTGACCCTGTTTCGATTGATAGAGCTGT 1226
| ||| || ||| || ||||| |||||||| ||||||||||| || || |||||||||||
Sbjct 1223 AGCACCAC-TTTCGCCTCTGCGATTCAGATCGGTGACCCTGTCTCCATCGATAGAGCTGT 1281
Query 1227 GTATGCGT-TGAAGAAAT-CTAATGGGATTGTTGAGGAAGCTACAGAGGAAGAGTTGATG 1284
||| || | | ||||| | | || || ||||| || ||||| || ||||| ||| |||||
Sbjct 1282 GTACGC-TCTCAAGAAGTGC-AACGGTATTGTAGAAGAAGCCACTGAGGAGGAGCTGATG 1339
Query 1285 GATGCAACAGCTCTTGCTGATTCTACTGGTATGTTTATATGTCCACATACTGGTGTTGCA 1344
||||||| |||| || ||||| || || |||||||| ||||||||||| ||||| ||
Sbjct 1340 GATGCAATGGCTCAAGCAGATTCGACGGGAATGTTTATCTGTCCACATACAGGTGTAGC- 1398
Query 1345 T-TGACGGCGT-TGATGAAGCTGAGAAAGTCA-GGAGTTATTGGAGCGAATGATCGGACT 1401
| | || || | || | |||||||| || || ||||| |||| ||| |||||| ||
Sbjct 1399 TCTAACTGC-TCTGTTCAAGCTGAGGAAC-CAAGGAGTGATTGCTCCGACTGATCGAACC 1456
Query 1402 GTGGTGGTGAGTACAGCTCATGGATTGAAGTTTACACAAAGTAAGATTGATTATCATTCT 1461
||||| |||||||| |||||||| ||||||||||| || |||||| ||||| || ||
Sbjct 1457 GTGGTTGTGAGTACTGCTCATGGGTTGAAGTTTACTCAGTCTAAGATCGATTACCACTCC 1516
Query 1462 AA-GAACATAAAGGAGATGGCTTGTAGATTGGCGAATCCACCAGT-GAAGGTTAAGGCAA 1519
|| | ||| || ||||| || ||||| | ||||| || || || | | || |||
Sbjct 1517 AATGC-CATCCCTGACATGGCCTGCAGATTCTCCAATCCTCCTGTTGATG-TAAAAGCAG 1574
Query 1520 AGTTT-GGTTCAGTTATGGATGTTCTCAAG 1548
| ||| || | || |||||||||||||||
Sbjct 1575 A-TTTCGGAGCTGTCATGGATGTTCTCAAG 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65439040910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5