BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72810.1 Length=1744 Score E Sequences producing significant alignments: (Bits) Value Ahg316241 jgi|Araly1|316241|fgenesh1_pm.C_scaffold_2001274 2396 0.0 Ahg491774 jgi|Araly1|491774|fgenesh2_kg.7__1207__AT4G29840.1 761 0.0 > Ahg316241 jgi|Araly1|316241|fgenesh1_pm.C_scaffold_2001274 Length=1560 Score = 2396 bits (1297), Expect = 0.0 Identities = 1476/1562 (94%), Gaps = 13/1562 (1%) Strand=Plus/Plus Query 25 ATGGCCTCATTCTCTCTTCC-CCACTCCGCCACCTACTTTCCTTCCCACTCTGAAACCTC 83 |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGCCTCATTCTCTC-TCCTCCACTCCGTCACCTACTTTCCTTCCCACTCTGAAACCTC 59 Query 84 ACTTAAACCTCACTCCGCCGCTTCCTTCACCGTCCGTTGCA---------CCTCCGCCTC 134 |||||||||| ||||||||||||||||||||||||| |||| |||||||||| Sbjct 60 ACTTAAACCTTACTCCGCCGCTTCCTTCACCGTCCGCTGCACCTCCTCCGCCTCCGCCTC 119 Query 135 TCCCGCCGTTCCTCCACAGACTCCACAGAAACCCCGTCGTTCACCCGATGAGAACATTCG 194 |||||||||||||||||| ||||| ||||||| ||| ||||| ||||| ||||||||||| Sbjct 120 TCCCGCCGTTCCTCCACAAACTCCGCAGAAACACCGCCGTTCCCCCGAAGAGAACATTCG 179 Query 195 AGACGAAGCTCGTCGCCGTCCTCATCAACTCCAAAACCTCTCCGCACGTTACGTCCCTTT 254 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 180 AGACGAAGCTCGTCGCCGTCCTCATCAACTCCAAAACCTCTCCGCACGCTACGTCCCTTT 239 Query 255 CAACGCTCCACCTTCTTCAACAGAATCCTACTCCCTCGACGAGATCGTCTACCGTTCACA 314 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 240 CAACGCTCCACCTTCTTCAACCGAATCCTACTCCCTCGACGAGATTGTCTACCGTTCACA 299 Query 315 ATCCGGTGCTCTCCTCGACGTCCAGCATGATTTCGCCGCCTTGAAACGCTACGACGGAGA 374 |||||||| ||||||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 300 ATCCGGTGGTCTCCTCGATGTCCAACACGATTTCGCCGCCTTGAAACGCTACGACGGAGA 359 Query 375 ATTCTGGCGTAACCTTTTCGATTCTCGCGTCGGTAAAACAAATTGGCCGTACGGATCAGG 434 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 360 ATTCTGGCGTAACCTCTTCGATTCTCGCGTCGGTAAAACCAATTGGCCGTACGGATCAGG 419 Query 435 CGTGTGGTCGAAGAAAGAGTGGGTACTCCCCGAGATCGACGATGACGACATCGTCTCTGC 494 ||| |||||||||||||||||||| || || |||||| |||||||||||||||| ||||| Sbjct 420 CGTTTGGTCGAAGAAAGAGTGGGTTCTTCCTGAGATCAACGATGACGACATCGTTTCTGC 479 Query 495 TTTTGAAGGAAACTCAAATCTCTTCTGGGCTGAGAGATTTGGTAAACAGTATCTGCAAAT 554 ||||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||| Sbjct 480 TTTTGAAGGAAACTCGAATTTGTTCTGGGCTGAGAGATTTGGTAACCAGTATCTGCAAAT 539 Query 555 GAACGATCTTTGGGTGAAACATTGTGGAATCAGCCACACTGGCTCCTTTAAAGATCTGGG 614 |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| Sbjct 540 GAACGATCTTTGGGTGAAACATTGTGGAATTAGCCACACTGGTTCGTTTAAAGATCTGGG 599 Query 615 CATGAGTGTTCTCGTTTCTCAGGTGAATCGTCTCCGGAAAATGAACAAACCAGTCATCGG 674 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CATGACTGTTCTTGTTTCTCAGGTGAATCGTCTCCGGAAAATGAACAAACCAGTCATCGG 659 Query 675 AGTTGGTTGCGCTTCTACTGGAGATACCTCCGCTGCTCTCTCTGCTTACTGTGCTTCCGC 734 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AGTTGGATGCGCTTCTACTGGAGATACCTCCGCTGCTCTCTCTGCTTACTGTGCTTCCGC 719 Query 735 TGGAATCCCCTCGATTGTCTTCTTACCTGCGGATAAAATCTCCATGGCTCAGCTTGTGCA 794 ||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| Sbjct 720 TGGAATCCCGTCGATCGTTTTCTTACCGGCGGATAAAATCTCCATGGCTCAGCTTGTGCA 779 Query 795 GCCGATTGCAAACGGAGCGTTTGTGCTTAGTATTGACACTGATTTTGACGGATGTATGCA 854 ||| ||||| || || || ||||||||||||||||| |||||||| |||||||||||||| Sbjct 780 GCCAATTGCTAATGGGGCTTTTGTGCTTAGTATTGATACTGATTTCGACGGATGTATGCA 839 Query 855 TTTGATCAGAGAAGTTACGGCGGAGCTTCCTATTTACTTGGCGAACTCTCTCAACAGCCT 914 ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 840 TTTGATCAGAGAAGTAACGGCGGAGCTTCCGATTTACTTAGCGAACTCTCTCAACAGCCT 899 Query 915 CCGTCTCGAAGGTCAAAAGACGGCGGCGATTGAGAT-TCTGCAGCAGTTTAATTGGCAAG 973 |||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| Sbjct 900 CCGTCTCGAAGGACAAAAGACGGCGGCGGTTGAGATAT-TGCAGCAGTTTAATTGGCAAG 958 Query 974 TTCCTGATTGGGTCATTGTTCCTGGAGGCAATCTTGGTAACATCTATGCGTTTTACAAAG 1033 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TTCCTGATTGGGTCATTGTTCCTGGAGGCAATCTTGGTAACATCTATGCGTTTTACAAAG 1018 Query 1034 GGTTTCATATGTGTAAAGAGTTAGGTCTTGTTGATCGTATCCCTAGGCTTGTTTGTGCTC 1093 ||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||||||| Sbjct 1019 GGTTTCATATGTGTAAAGAGTTAGGTCTTGTTGATAGAATCCCTAGACTTGTGTGTGCTC 1078 Query 1094 AAGCTGCTAATGCAAATCCACTTTACTTGCATTACAAATCTGGGTTTAAAGAAGATTTCA 1153 |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1079 AAGCTGCTAACGCTAATCCACTTTACTTGCACTACAAATCTGGGTTTAAAGAAGATTTCA 1138 Query 1154 ATCCATTGAAAGCAAACACTACATTTGCTTCTGCTATTCAGATTGGTGACCCTGTTTCGA 1213 |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| Sbjct 1139 ATCCATTGAAAGCAAACACTACATTTGCTTCTGCGATTCAGATCGGCGACCCTGTTTCGA 1198 Query 1214 TTGATAGAGCTGTGTATGCGTTGAAGAAATCTAATGGGATTGTTGAGGAAGCTACAGAGG 1273 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | Sbjct 1199 TTGATAGAGCTGTGTATGCGTTGAAGAAATCTAATGGCATTGTTGAGGAAGCTACTGAAG 1258 Query 1274 AAGAGTTGATGGATGCAACAGCTCTTGCTGATTCTACTGGTATGTTTATATGTCCACATA 1333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 AAGAGTTGATGGATGCAACAGCTCTTGCTGATTCTACTGGTATGTTTATATGTCCACATA 1318 Query 1334 CTGGTGTTGCATTGACGGCGTTGATGAAGCTGAGAAAGTCAGGAGTTATTGGAGCGAATG 1393 | ||||||||||||||||||||||| |||||||| ||||| |||||||| | |||||||| Sbjct 1319 CAGGTGTTGCATTGACGGCGTTGATAAAGCTGAGGAAGTCTGGAGTTATCGAAGCGAATG 1378 Query 1394 ATCGGACTGTGGTGGTGAGTACAGCTCATGGATTGAAGTTTACACAAAGTAAGATTGATT 1453 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1379 ATCGGACTGTGGTGGTGAGTACAGCTCATGGATTGAAGTTTACGCAGAGTAAGATTGATT 1438 Query 1454 ATCATTCTAAGAACATAAAGGAGATGGCTTGTAGATTGGCGAATCCACCAGTGAAGGTTA 1513 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1439 ATCATTCTAAGAATATAAAGGAGATGGCTTGTAGATTGGCGAATCCACCGGTGAAGGTTA 1498 Query 1514 AGGCAAAGTTTGGTTCAGTTATGGATGTTCTCAAGGAGTATTTGAAGAGCAATGATAAAT 1573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 AGGCAAAGTTTGGTTCAGTTATGGATGTTCTCAAGGAGTATTTGAAGAGCAATGATAAAT 1558 Query 1574 AA 1575 || Sbjct 1559 AA 1560 > Ahg491774 jgi|Araly1|491774|fgenesh2_kg.7__1207__AT4G29840.1 Length=1798 Score = 761 bits (412), Expect = 0.0 Identities = 1006/1290 (78%), Gaps = 51/1290 (4%) Strand=Plus/Plus Query 283 TACTCCCTCGACGAGATCGTCTACCGT-TCACAATCCGGTGCTCTCCTCGACGTCCAGCA 341 ||||| |||||||||||||| |||||| | | ||||||| | | || || || |||| Sbjct 341 TACTCTCTCGACGAGATCGTGTACCGTAGC-CGCTCCGGTGGTTTGCTTGATGTTGAGCA 399 Query 342 TGATTTCGCCGCCTTGAAACGCTACGACGGAGAAT-TCTGGCGTA-ACCTTTTCGATTCT 399 ||| | | || ||||| || | ||| || | | | ||||| | | || |||||||| Sbjct 400 CGATATGGAGGCTTTGAAGCGATTCGATGGCGCGTAT-TGGCG-AGATCTCTTCGATTCG 457 Query 400 CGCGTCGGTAAAA-CAAATTGGCCGTACGGATCAGGCGTGTGGTCGAAGAAAGAGTGGGT 458 || || ||||||| || | ||||| || ||||| || || |||||||||||||||||||| Sbjct 458 CGTGTTGGTAAAAGCACA-TGGCCTTATGGATCGGGTGTTTGGTCGAAGAAAGAGTGGGT 516 Query 459 ACTCCCCGAGATCGACGATGACGACATCGTCTCTGCTTTTGAAGGAAACTCAAATCTCTT 518 || || |||||||| || ||||||||||| || ||||||||||||||||| ||| | || Sbjct 517 TCTTCCTGAGATCGATGACGACGACATCGTTTCGGCTTTTGAAGGAAACTCGAATTTGTT 576 Query 519 CTGGGCTGAGAGATTTGGTAAACAGTATCT-GCAAATGAACGATCTTTGGGTGAAACATT 577 |||||||||||||||||||||||||| ||| | || |||| ||||| ||||||||||| | Sbjct 577 CTGGGCTGAGAGATTTGGTAAACAGTTTCTAGGAA-TGAATGATCTGTGGGTGAAACACT 635 Query 578 GTGGAATCAGCCACACTGGCTCCTTTAAAG-ATCTGGGCATGAGTGTTCTCGTTTCTCAG 636 |||| || || || ||||| ||| ||| |||| || |||| |||| | ||| ||| Sbjct 636 GTGGGATTAGTCATACTGGAAG-TTTCAAGGATCTTGGAATGACTGTTTTGGTTAGTCAA 694 Query 637 GTGAATCGTCTCCGGAAAATGAA-CAAACCAGTCATCGGAGTTGGTTGCGCTTCTACTGG 695 || |||||||| | |||||||| | | || || | || ||||| || ||||| || || Sbjct 695 GTCAATCGTCTGAGAAAAATGAAACGA-CCTGTTGTTGGTGTTGGATGTGCTTCCACCGG 753 Query 696 AGATACCTCCGCTGCTCTCTCTGCTTACTGTGCTTCCGCTGGAATCCCCTCGATTGTCTT 755 |||||| || || ||||| || ||||| ||||| || ||||||||||| |||||||| || Sbjct 754 AGATACTTCTGCGGCTCTATCCGCTTATTGTGCCTCTGCTGGAATCCCATCGATTGTGTT 813 Query 756 CTTACCTGCGGATAAAATCTCCATGGCTCAGCTTGTGCAGCCGATTGCAAACGGAGCGTT 815 |||||| ||| |||| ||||| ||||||||||| || |||||||| || || || ||||| Sbjct 814 CTTACCGGCGAATAAGATCTCAATGGCTCAGCTGGTTCAGCCGATAGCTAATGGTGCGTT 873 Query 816 TGTGCTT-AGTATTGACACTGATTTTGACGGATGTATGCATTTGATCAGAGAAGTTA-CG 873 ||| || |||||||||||||||||||| || |||||| | |||| ||||| | || | Sbjct 874 TGTT-TTGAGTATTGACACTGATTTTGATGGGTGTATGAAGCTGATTAGAGA-GATAACA 931 Query 874 GCGGAGCTT-CCTATTTACTTGGCGAACTC-TCTCAACAGCCTCCG-TCTCGAAGGTCA- 929 ||||| || || ||||| ||||| || || | | || || | | | | ||||| || Sbjct 932 GCGGAA-TTGCCGATTTATTTGGCTAATTCGT-TGAATAGTTTGAGGT-TAGAAGGGCAG 988 Query 930 AAAGACGGCGGCGATTGAGATTCTGCAGCAGTTTAATTGGCAAGTTCCTGATTGGGTCAT 989 ||| || || || ||||||||||||||||||||| ||||||||||||| |||||||| || Sbjct 989 AAA-ACTGCTGCTATTGAGATTCTGCAGCAGTTTGATTGGCAAGTTCCGGATTGGGTGAT 1047 Query 990 TGTTCCTGGAGGCAATCTTGGTAACATCTATGCGTTTTACAAAGGGTTTCAT-ATGTGTA 1048 |||||||||||||||||| || ||||||||||| ||||||||||| || || |||||| Sbjct 1048 TGTTCCTGGAGGCAATCTAGGAAACATCTATGCTTTTTACAAAGGATT-CAAGATGTGTC 1106 Query 1049 AAGAGTTAGGTCTTGTTGATCGTATCCCTAGGCTTGTTTGTGCTCAAGCTGCTAATGCAA 1108 |||| | || ||||| ||| | ||||| ||| | || ||||| ||||| |||||||| | Sbjct 1107 AAGAACTGGGACTTGTCGATAGGATCCCGAGGATGGTCTGTGCACAAGCAGCTAATGCTA 1166 Query 1109 ATCCACTTTACTTGCATTACAAATCTGGGTTTAAAGAAGATTTCAATCC-ATTGAAAGCA 1167 |||| ||||||||||| ||||| ||||| || ||| || ||||| || || || ||| Sbjct 1167 ATCCTCTTTACTTGCACTACAAGTCTGG-TTGGAAG--GACTTCAAGCCCAT-GACTGCA 1222 Query 1168 AACACTACATTT-GCTTCTGCTATTCAGATTGGTGACCCTGTTTCGATTGATAGAGCTGT 1226 | ||| || ||| || ||||| |||||||| ||||||||||| || || ||||||||||| Sbjct 1223 AGCACCAC-TTTCGCCTCTGCGATTCAGATCGGTGACCCTGTCTCCATCGATAGAGCTGT 1281 Query 1227 GTATGCGT-TGAAGAAAT-CTAATGGGATTGTTGAGGAAGCTACAGAGGAAGAGTTGATG 1284 ||| || | | ||||| | | || || ||||| || ||||| || ||||| ||| ||||| Sbjct 1282 GTACGC-TCTCAAGAAGTGC-AACGGTATTGTAGAAGAAGCCACTGAGGAGGAGCTGATG 1339 Query 1285 GATGCAACAGCTCTTGCTGATTCTACTGGTATGTTTATATGTCCACATACTGGTGTTGCA 1344 ||||||| |||| || ||||| || || |||||||| ||||||||||| ||||| || Sbjct 1340 GATGCAATGGCTCAAGCAGATTCGACGGGAATGTTTATCTGTCCACATACAGGTGTAGC- 1398 Query 1345 T-TGACGGCGT-TGATGAAGCTGAGAAAGTCA-GGAGTTATTGGAGCGAATGATCGGACT 1401 | | || || | || | |||||||| || || ||||| |||| ||| |||||| || Sbjct 1399 TCTAACTGC-TCTGTTCAAGCTGAGGAAC-CAAGGAGTGATTGCTCCGACTGATCGAACC 1456 Query 1402 GTGGTGGTGAGTACAGCTCATGGATTGAAGTTTACACAAAGTAAGATTGATTATCATTCT 1461 ||||| |||||||| |||||||| ||||||||||| || |||||| ||||| || || Sbjct 1457 GTGGTTGTGAGTACTGCTCATGGGTTGAAGTTTACTCAGTCTAAGATCGATTACCACTCC 1516 Query 1462 AA-GAACATAAAGGAGATGGCTTGTAGATTGGCGAATCCACCAGT-GAAGGTTAAGGCAA 1519 || | ||| || ||||| || ||||| | ||||| || || || | | || ||| Sbjct 1517 AATGC-CATCCCTGACATGGCCTGCAGATTCTCCAATCCTCCTGTTGATG-TAAAAGCAG 1574 Query 1520 AGTTT-GGTTCAGTTATGGATGTTCTCAAG 1548 | ||| || | || ||||||||||||||| Sbjct 1575 A-TTTCGGAGCTGTCATGGATGTTCTCAAG 1603 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65439040910 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5