BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72820.1
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476418 jgi|Araly1|476418|fgenesh2_kg.2__1548__AT1G72820.1 2796 0.0
> Ahg476418 jgi|Araly1|476418|fgenesh2_kg.2__1548__AT1G72820.1
Length=1754
Score = 2796 bits (1514), Expect = 0.0
Identities = 1657/1723 (96%), Gaps = 21/1723 (1%)
Strand=Plus/Plus
Query 73 ctctTCTAACATCGGTCTTGTATTGGTGCTTATTGGATATCTCCGGCGAAGGAAACGAGT 132
||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 52 CTC-TCT-ACATCGATCTCGTATTGGTGCTTATTGGATATCTCCGGCGAAGGAAACGGGT 109
Query 133 TTCGCGGTTAGATTTTTCTTTATCGCTTACCGGCGAGGATGATCGTTTCTTCGGTAAGGT 192
|||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 110 TTCGCGGTTAGA-GTTTCTTTATCGCTTACCGGCGACGATGATCGTATCTTCGGTAAGGT 168
Query 193 CGATTAATCGGTTCTGTTTTCGAAGATGTTGTTGTTAGAGTTAGATCCGCATGGTTTTGG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CGATTAATCGGTTCTGTTTTCGAAGATGTTGTTGTTAGAGTTAGATCCGCATGGTTTTGG 228
Query 253 TGATCGTTTTGGATCGAAGACGTGGTTCCACAGACGCAAAAAATGCCGTCGTCTCTTGCT 312
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 229 TGATCGTTTTGGATCGAAGACGTGGTTCCACAGACGCAAAAAATGCTGTCGTCTCTTGCT 288
Query 313 TTGAGATTTGGCTTCTGAAATCTTTCCTCTTTCGTTCTCGTTGAATCCTAAtttttgttt 372
|||||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 289 TTGAGATTTGTCTTCTGAAATCTTTCCTCTTTTGTGCTCGTTGAATCC------------ 336
Query 373 tgtcttttttagaaatttttggtctttCTAATCCTGGGGATAGGTTACAGTCTCCGATTG 432
| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 337 --T-TTTTTTAGAAATTTTTGGTC-TTCGAATCCTGGGGATAGGTTACAGTCTCCGATTG 392
Query 433 TAAATAGAAATTTGCGGCGAGGTTAGGAAAAGTTGTACAGATAGAGATTGAGCTCTGAAA 492
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 393 TAAATAGAAATTTGCGGCGTCGTTAGGAAAAGTTGTACAGATAGAGATTGAACTCTGAAA 452
Query 493 CACATCTCAGGAACATTTTTTGTTCCTTGTTTAAAAAAG-tttttttttttGTGTGTGTT 551
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||| | ||||
Sbjct 453 CACATCTCAGGAACATTTTTTGTTTCTTGTATAAAAAAGTTTTTTTTTTTTGT-TTTGTT 511
Query 552 TCTCTGGGTTGGTTAGAAAGTGGCGAAGATGAATTTGGGTGCGGCCGAGGAAGAATCGGC 611
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 512 TCTCTGGGTTGGTTAGAAAGTGGCGAAGATGAATCTGGGTGCGGCCGAGGAAGAATCGGC 571
Query 612 TCAGGAGATTCATTTACCAGCTGATATCAATTGGGAGATGCTTGATAAATCCAAGTTTTT 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TCAGGAGATTCATTTACCAGCTGATATCAATTGGGAGATGCTTGATAAATCCAAGTTTTT 631
Query 672 CGTTTTAGGCGCTGCTTTGTTTTCAGGGGTATCTGGAGCTCTTTATCCTGCGGTTTTGAT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 CGTTTTAGGCGCTGCTTTGTTTTCAGGGGTATCTGGAGCTCTTTATCCTGCGGTTTTGAT 691
Query 732 GAAAACTCGGCAACAAGTGTGTCATTCGCAAGGTTCTTGTATTAAAACTGCGTTTACTCT 791
|||||||||||||||||| |||||||||||||| |||||||| | |||||||||||| ||
Sbjct 692 GAAAACTCGGCAACAAGTTTGTCATTCGCAAGGCTCTTGTATCAGAACTGCGTTTACCCT 751
Query 792 TGTGAGACATGAAGGTTTAAGGGGATTGTACAGAGGATTTGGAACTTCTTTGATGGGAAC 851
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 752 TGTGAGACACGAAGGTTTAAGGGGATTGTACAGAGGATTTGGTACTTCTTTGATGGGAAC 811
Query 852 TATCCCTGCTCGTGCTTTGTACATGACTGCCTTGGAGGTTACTAAGAGTAACGTAGGCTC 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 TATCCCTGCTCGTGCTTTGTACATGACTGCCTTGGAGGTTACTAAGAGTAACGTAGGCTC 871
Query 912 TGCTGCTGTCAGCTTGGGGTTGACAGAGGCTAAAGCTGCTGCTGTTGCTAATGCGGTTGG 971
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 872 TGCTGCTGTCAGCTTGGGGTTGACAGAGGCTAAAGCTGCTGCAGTTGCTAATGCGGTTGG 931
Query 972 AGGTTTGAGTGCTGCGATGGCTGCACAGCTTGTTTGGACTCCTGTTGATGTGGTTAGCCA 1031
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 AGGTTTGAGTGCTGCCATGGCTGCACAGCTTGTTTGGACTCCTGTTGATGTGGTTAGCCA 991
Query 1032 AAGGCTTATGGTTCAAGGAAGTGCTGGTCTTGTTAATGCATCAAGGTGTAATTATGTTAA 1091
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 992 AAGGCTTATGGTTCAAGGAAGTGCCGGTCTTGTCAATGCATCGAGGTGTAATTATGTTAA 1051
Query 1092 CGGGTTTGATGCATTTAGAAAGATCGTTCGCGCTGATGGACCGAAGGGGTTATACAGAGG 1151
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1052 CGGGTTTGATGCATTTAGAAAGATTGTTCGCGCTGATGGACCTAAGGGGTTATACAGAGG 1111
Query 1152 GTTTGGGATATCGATTCTGACTTATGCGCCGTCTAATGCTGTTTGGTGGGCGTCTTACTC 1211
|||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1112 GTTTGGCATATCGATTCTGACTTATGCCCCGTCTAATGCAGTTTGGTGGGCGTCTTACTC 1171
Query 1212 TGTTGCACAGCGGATGGTTTGGGGTGGAATTGGGTGTTATGTCTGTAAGAAAGACGAAGA 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 TGTTGCACAGCGGATGGTTTGGGGTGGAATTGGGTGTTATGTCTGTAAGAAAGACGAAGA 1231
Query 1272 AAGCGGGAACAATAGTACCACGATGAAACCAGATTCTAAAACGATAATGGCTGTTCAAGG 1331
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1232 AATTGGGAACAATAGTACCACGATGAAACCAGACTCTAAAACGATAATGGCTGTTCAAGG 1291
Query 1332 AGTTAGTGCTGCGATTGCTGGAAGTGTTTCTGCTTTGATTACAATGCCACTCGACACAAT 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 AGTTAGTGCTGCGATTGCTGGAAGTGTTTCTGCTTTGATTACAATGCCACTCGACACAAT 1351
Query 1392 CAAGACGAGATTGCAGGTTCTTGATGGGGAAGATAGTAGTAACAACGGGAAGCGTGGACC 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 CAAGACGAGATTGCAGGTTCTTGATGGGGAAGATAGTAGTAACAACGGGAAGCGTGGACC 1411
Query 1452 GAGTATTGGACAGACTGTAAGAAACTTGGTTAGAGAAGGTGGATGGACGGCTTGTTATAG 1511
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1412 GAGTATTGGACAGACTGTAAGAAACTTGGTTAGAGAAGGTGGATGGACAGCTTGTTATAG 1471
Query 1512 AGGATTGGGACCAAGATGTGCTTCAATGTCAATGTCTGCAACAACTATGATCACTACCTA 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 AGGATTGGGACCAAGATGTGCTTCAATGTCAATGTCTGCAACAACTATGATCACTACCTA 1531
Query 1572 CGAGTTCTTGAAACGGCTTTCTGCTAAGAACCATGACGGGTTTTATTCTAAATCATAGTG 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 CGAGTTCTTGAAACGGCTTTCTGCTAAGAACCATGACGGGTTTTATTCTAAATCATAGTG 1591
Query 1632 ATAACAACTGGGAATCCACATAGAAGAATCTTTTATGGAAATGTCTCTAGTTTTCTTACT 1691
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 ATAACAACTTAGAATCCACATAGAAGAATCTTTTATGGAAATGTCTCTAGTTTTCTTACT 1651
Query 1692 TATCTTGTTCTTTATCTAGCTCTTCTGCTATTTCATTTGTTTCCAGTCATATGTAAGGAA 1751
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1652 TATCTTGTTCTTTGTCTAGCTGTTCTGCTATTTCATTTGTTTCCAGTCATATGTAAGGAA 1711
Query 1752 TGTGTTAAATTCAGTTGTTTTTAAATAAATAAATGTTCTTTCC 1794
|||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1712 TGTGTTAAATTCAGTTGTTTCTAAATAAATAAATGTTATTTCC 1754
Score = 100 bits (54), Expect = 3e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1 TAACAGTATAACTGTATAAGGTCTCATTTTCGTGTGCTCTCGTCGCGATTACTCTCT 57
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TAACAGTATAACTGTATAAGGTCTCATTTGCGTGTGCTCTCGTCGCGATTACTCTCT 57
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419733650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5