BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72830.2
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339498 jgi|Araly1|339498|fgenesh1_pg.C_scaffold_2001597 1485 0.0
Ahg471968 jgi|Araly1|471968|fgenesh2_kg.1__1922__AT1G17590.3 558 4e-158
> Ahg339498 jgi|Araly1|339498|fgenesh1_pg.C_scaffold_2001597
Length=1008
Score = 1485 bits (804), Expect = 0.0
Identities = 949/1017 (93%), Gaps = 17/1017 (2%)
Strand=Plus/Plus
Query 442 TGAATAAGAAAGATTCAGCTACTCATTCCACTTTGCCATACCTTAATACTAGCATCTCTT 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TGAATAAGAAAGATTCAGCTACTCATTCCACTTTGCCATACCTTAATACTAGCATCTCTT 61
Query 502 GGGGAGTGGTTCCAACTGATTCCGTTGCTAATCGTCGCGGT--T-CTGCTGAATCA-C-- 555
||||||||||||||||||||||| ||| ||||||||||| | | || |||||||| |
Sbjct 62 GGGGAGTGGTTCCAACTGATTCCATTGTTAATCGTCGCGTTACTACTACTGAATCATCAC 121
Query 556 TAAGCTTGAAGGTTGATTCAAGACCTGGGCATATACAAACTACAAAGCAAATCAGTTTTC 615
||||||||||| | ||| |||| |||| | | ||||||| || ||||||||||||||||
Sbjct 122 TAAGCTTGAAGATGGATGCAAGGCCTGAACTTTTACAAACCACTAAGCAAATCAGTTTTC 181
Query 616 AGGACCAAGATTCATCTTCAACACAGTCCACTGGTCAATCTTATACTGAAGTTGCTAGTA 675
||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 182 AGGACCAGGATTCATCTTCAACGCAGTCCACTGGCCAATCTTATACTGAAGTTGCTAGTA 241
Query 676 GTGGTGATGATAATCCTTCCAGACAAATCTCCTTTTCGGCTAAATCAGGATCTGAAATAA 735
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 242 GTGAAGATGATAATCCTTCCAGACAAATCTCGTTTTCTGCTAAATCAGGATCTGAAGTAA 301
Query 736 CTCAACGGAAGGGGTTTGCAAGTAATCCTAAACAAGGCTCGATGACTGGATTTCCGAATA 795
||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 302 CTCAACGGAAGGGGTTTGCAAGTAATCCTAAACCAGGCTTGATGACAGGATTTCCGAATA 361
Query 796 TTCACTTTGCTCCTGCACAGGCTAATTTCTCATTTCACTATGCTGATCCACATTATGGTG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTCACTTTGCTCCTGCACAGGCTAATTTCTCATTTCACTATGCTGATCCACATTATGGTG 421
Query 856 GTTTATTAGCTGCAACTTACCTACCACAGGCACCAACATGCAATCCTCAAATGGTGAGTA 915
||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||
Sbjct 422 GTTTATTAGCTGCTACTTACCTACCACAGGCACCGACATGCAATCCCCAAATGATGAGTA 481
Query 916 TGATTCCTGGTCGTGTTCCTTTACCAGCAGAGCTCACAGAAACTGATCCAGTCTTTGTCA 975
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 482 TGATTCCTGGTCGTGTTCCTTTACCAGCGGAGCTCACTGAAACTGAGCCAGTCTTTGTCA 541
Query 976 ATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCTAAGCTTGAGGCTC 1035
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 542 ATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCTAAGCTCGAGGCTC 601
Query 1036 AAAACAAACTAATCAGAGCCCGTAAGGTACCCTATCTTCATGAGTCTCGACATGTTCATG 1095
||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct 602 AAAACAAACTAATCAGAGCCCGTAA---ACCTTATCTTCATGAGTCGCGACATGTTCATG 658
Query 1096 CTCTTAAAAGGCCAAGAGGATCTGGTGGAAGATTCCTAAACACCAAAAAACTTCTTCAAG 1155
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCTTAAAAGGCCAAGAGGATCCGGTGGAAGATTCCTAAACACCAAAAAACTTCTTCAAG 718
Query 1156 AATCCGAACAGGCTGCTGCTAGAGAACAAGAACAGGACAAGTTAGG-CCAACAGGTAAAC 1214
|| ||||||| |||||| |||||||||||| | ||||||| || |||||||| ||||
Sbjct 719 AAGCCGAACAAGCTGCT---AGAGAACAAGAAAATGACAAGTC-GGACCAACAGGAAAAC 774
Query 1215 AGAAAGACCAACATGTCTAGATTCGAAGCTCATATGCTGCAGAACAACAAAGACCGCAGC 1274
|||||||| |||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 775 AGAAAGACAAACATGTCTAGATTCGAAGCTCATATGCTGCA---CAGCAAAGACCGTGGT 831
Query 1275 TCAACCACTTCTGGCTCAGACATCACCTCTGTTTCCGACGGTGCTGATATCTTTGGACAC 1334
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 832 TCAACCACTTCTGGCTCTGACATCACCTCTATTTCCGACGGTGCTGATATCTTTGGACAC 891
Query 1335 ACTGAATTCCAGTTTTCAGGTTTCCCAACTCCGATAAACCGAGCCATGCTTGTTCATGGT 1394
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 892 ACTGAATTCCAGTTTTCAGGTTTCCCAAATCCGACAAACCGAGCCATGCTTGTTCATGGT 951
Query 1395 CAGTCTAATGACATGCATGGAGGTGGAGACATGCACCATTTCTCTGTCCATATCTGA 1451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CAGTCTAATGACATGCATGGAGGTGGAGACATGCACCATTTCTCTGTCCATATCTGA 1008
> Ahg471968 jgi|Araly1|471968|fgenesh2_kg.1__1922__AT1G17590.3
Length=1672
Score = 558 bits (302), Expect = 4e-158
Identities = 775/990 (78%), Gaps = 85/990 (9%)
Strand=Plus/Plus
Query 561 TTGAAGGTTGATTCAAGACCTGGGCAT-ATACAAACTACAAAGCAA-ATCAGTTTTCAGG 618
|||||||| ||| ||||||| | | | | |||| ||||| || ||||||| ||||
Sbjct 540 TTGAAGGTAGATGCAAGACCAGAACGTCTTTTAAAC-ACAAA-TAATTTCAGTTTCCAGG 597
Query 619 ACCAAGATTCATCTTCAACACAGTCCACTGGTCAATCTTATACTGAAGTTGCTAGTAGTG 678
|||| |||||||||||||| | |||||||| |||||||| ||| | ||||||| |||||
Sbjct 598 ACCAGGATTCATCTTCAACTCTGTCCACTGCTCAATCTTCTACCCATGTTGCTACTAGTG 657
Query 679 GTGATGATAATCCTTCCAGACAAATCTCCTTTTC-G-----GCT-A-A---AT-CAGGAT 726
| |||||| | || |||||||| ||||| ||||| | || | | | |||||
Sbjct 658 GAGATGATGACCCCTCCAGACATATCTCATTTTCAGCACATTCTGATATTTGTAAAGGAT 717
Query 727 CTGAA-ATAACTCAACGGAAGGGGTTTGCAAGTAATCCTAAA-CAAGG---CTCGATGAC 781
|||| | ||||||| ||||| ||||||| | || |||| | ||| ||| | | |
Sbjct 718 TTGAAGA-AACTCAAAGGAAGCAATTTGCAAATCATATTAAATC-AGGCTCCTCCACGGC 775
Query 782 TGG-ATTTCCGAATATTCACTTTGCTCC-TGCACAGGCTAATTTCTCATTTCACTATGCT 839
|| || | | ||||||||||| |||| | || ||||||| |||||||||||||||||
Sbjct 776 AGGAATCGCTG-ATATTCACTTTTCTCCTTCCA-AGGCTAACTTCTCATTTCACTATGCC 833
Query 840 GATCCACATTATGGTGGTTTATTAG-CTGCAACTTACCTACCACAGGCACCAACATGCAA 898
|||||||||| ||||||| || | | |||| ||||||||| ||||||| ||| ||| ||
Sbjct 834 GATCCACATTTTGGTGGTGTAAT-GCCTGCGGCTTACCTACAACAGGCAACAATATGGAA 892
Query 899 TCCTCAAATGGTGAGTATGA-TTCCTGGTCGTGTTCCTTTACCAGCAGAGCTCACAGAAA 957
||| |||||||||||| || |||| | | | || || | || |||| |||||
Sbjct 893 TCCCCAAATGGTGAGT-CGAGTTCC--G-C---TACCATT-----C-GACCTCATAGAAA 939
Query 958 CTGATCCAGTCTTTGTCAATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAAC 1017
||| || |||||||||||||| ||||||| ||| ||||||||||||||||| || ||||
Sbjct 940 ATGAGCCTGTCTTTGTCAATGCAAAGCAATTCCATGCAATTATGAGGAGGAGGCAACAAC 999
Query 1018 GTGCTAAGCTTGAGGCTCAAAACAAACTAATCAGAGCCCGTAAGGTACCCTATCTTCATG 1077
|||| ||||| ||||| ||||||||| |||||||||||||||| | || ||||||||||
Sbjct 1000 GTGCAAAGCTAGAGGCGCAAAACAAATTAATCAGAGCCCGTAA-G--CCGTATCTTCATG 1056
Query 1078 AGTCTCGACATGTTCATGCTCTTAAAAGGCCAAGAGGATCTGGTGGAAGATTCCTAAACA 1137
| |||||||||||||| ||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1057 AATCTCGACATGTTCACGCTCTTAAACGACCTAGAGGATCTGGTGGAAGATTCCTAAACA 1116
Query 1138 CCAAAAAACTTCTTCAAGAATCCGAACAGGCTGCTGCTAGAGAACAAGAACAGGACAAGT 1197
|| | ||| |||||||||| | |||| | | | | | |||||| ||| | |||
Sbjct 1117 CC-AGAAA--GCTTCAAGAAT-C-TACAGAC--C--C-A-A-AACAAG-ACATGCCAA-- 1161
Query 1198 TAGGCCAACAGGTAAACA-G-AAAGACCAACATGTCTA-GATTCGAAGCTCA-TATGCTG 1253
| |||||| | |||| | |||| |||||||| | |||||| ||||| | ||||
Sbjct 1162 T---CCAACA-G-CAACACGCAAAGGGAAACATGTC-ACGATTCGTGGCTCACCA-GCTG 1214
Query 1254 CAGAACAACAAAGACC---GCAGCTCAACCACTTCTGGCTCAGACATCACCTCTGTTTCC 1310
|||| || ||| |||| | | ||||||||||||||||| ||||||||||||| |||
Sbjct 1215 CAGACCAGCAAGGACCGTGGTTGTTCAACCACTTCTGGCTCTGACATCACCTCTGCTTCT 1274
Query 1311 GACGGTGCTGATATCTTTGGACACACTGAATTCCAGTTTTCAGGTTTCCCAACTCCGATA 1370
||||| | |||| ||||||||||| ||||||| ||| | |||| | |||| ||| || |
Sbjct 1275 GACGGCGTTGATCTCTTTGGACACTCTGAATTTCAGATATCAGATCACCCATCTCAGACA 1334
Query 1371 AACCGAGCCATGCT-TGTTCATGGTCAGTCTAATGACATGCATGGAGGT-GGAGACA-TG 1427
|||| | | ||| | |||||||||||| || |||||||||||||||||| ||| ||| |
Sbjct 1335 AACCCAACAATG-TATGTTCATGGTCAATCAAATGACATGCATGGAGGTGGGA-ACACT- 1391
Query 1428 CACCATTTCTCTGTCCATATCTGAGACAGTGGA-TCTTGGTGCTGTGTTCATGTTCCCAC 1486
|| |||||||||||||||||||||||||||||| | |||||| ||||| || |||||||
Sbjct 1392 CATCATTTCTCTGTCCATATCTGAGACAGTGGAAT-TTGGTGATGTGT--ATTTTCCCAC 1448
Query 1487 CAAGAAGGGGAAGTCATCCTTGGCTACTAC 1516
|| || |||||||||||||||||| ||||
Sbjct 1449 AAAAAAAGGGAAGTCATCCTTGGCTGCTAC 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63344077435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5