BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72880.2
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476423 jgi|Araly1|476423|fgenesh2_kg.2__1553__AT1G72880.1 2322 0.0
> Ahg476423 jgi|Araly1|476423|fgenesh2_kg.2__1553__AT1G72880.1
Length=1648
Score = 2322 bits (1257), Expect = 0.0
Identities = 1394/1459 (96%), Gaps = 13/1459 (1%)
Strand=Plus/Plus
Query 110 TTACGATGACCTCGAAGAACAATGGTTTGTCAGCTGCGCTCGTTTCGAATCTCCAAGATG 169
||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 198 TTACGATGACCTCGAAGAACAATGGTTTGTCTGCCGCGCTTGTATCGAATCTCCAAGATG 257
Query 170 TGCTTTCGAAGAGAAAAGTAGGAAATGAGGAAAAAGTTGGA-AGCGATGGATCGGCGGAG 228
|||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||
Sbjct 258 TGCTTTCGAAGAGAAAAGTAGGGAACGAGGAAAAAGTT-GAGAGCGATGGATCGGCGGAG 316
Query 229 GAGGCTCCGTCTACATCTGATTCCGTTGATGTTGCGTCGGTGGAGGAAGAGATCGATGAT 288
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 317 GAGGCTCCGTCTACATCTGATTCCGTTGATGTTGCGGCGGTGGAGGAAGAGATCGATGAC 376
Query 289 TCTAGACCTATTGTTTTAGTTACGAATGGTGATGGGATTGATTCGCCAGGGCTTGTTTCT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TCTAGACCTATTGTTTTAGTTACGAATGGTGATGGGATTGATTCGCCAGGGCTTGTTTCT 436
Query 349 CTCGTTGAGGCTTTGGTTCTCGAAGGGCTTTACAATGTTCATGTTTGTGCTCCTCAAACG 408
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 437 CTCGTTGAGGCTTTGGTTCTTGAAGGGCTTTACAATGTTCATGTTTGTGCTCCTCAAACG 496
Query 409 GACAAATCAGCCTCTGCTCATTCTACTACTCCAGGAGAAACAATCGCTGTAAGCTCTG-T 467
|| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 497 GATAAATCAGCTTCTGCTCATTCTACGACTCCTGGAGAAACAATCGCTGTAAGCTCTGTT 556
Query 468 AAAACTCAAAGGTGCCACAGCCTTTGAAGTTTCAGGGACTCCTGTGGACTGCATCTCATT 527
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 AGTA-TCAAAGGTGCCACAGCCTTTGAAGTTTCAGGGACTCCTGTGGACTGCATCTCATT 615
Query 528 AGGATTATCTGGAGCGCTTTTTGCTTGGTCAAAACCTA-TACTGGTAATTAGTGGAATTA 586
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 616 AGGATTATCTGGAGCGCTTTTTGCTTGGTCAAAACC-AGTACTGGTAATTAGTGGAATCA 674
Query 587 ATCAGGGATCAAGCTGTGGCCATCAAATGTTCTATTCAGGTGCAGTTGCTGGAGGCAGGG 646
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 675 ATCAGGGTTCAAGCTGTGGCCATCAAATGTTCTATTCAGGTGCAGTTGCTGGAGCCAGGG 734
Query 647 AGGCTTTGATTTCTGGGGTACCCTCTTTGTCAATATCGTTGAATTGGAAGAAAAATGAAA 706
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 735 AGGCTTTGATTTCTGGAGTACCCTCTTTGTCAATATCGTTGAACTGGAAGAAAGATGAAA 794
Query 707 GCCAAGAAAGTCACTTTAAGGATGCTGTTGGTGTCTGCTTACCTTTGATAAACGCAACTA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GCCAAGAAAGTCACTTTAAGGATGCTGTTGGTGTCTGCTTACCTTTGATAAACGCAACTA 854
Query 767 TCAGAGACATTGCGAAAGGAGTTTTCCCTAAAGACTGCTCTCTCAACATAGAAATTCCAA 826
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 855 TCAGAGACATTGCAAAAGGAGTTTTCCCTAAAGACTGCTCTCTCAATATAGAAATTCCAA 914
Query 827 CATCACCCTCATCAAACAAGGGTTTCAAGGTAACAAAGCAAAGCATGTGGAGGCAGTA-T 885
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 915 CATCACCCTCATCAAACAAGGGTTTCAAGGTAACAAAACAAAGCATGTGGAGGCAG-AGT 973
Query 886 CCTAGTTGGCAAGCTGTTTCAGCTAATCGTCACCCTGGTGCTGGGAATTTCATGTCCAAC 945
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 974 CCTAGTTGGCAAGCTGTTTCAGCTCACCGTCACCCTGGTGCTGGGAATTTCATGTCCAAC 1033
Query 946 CAACAAAGTTTAGGGGCTCAGCTTGCCCAGCTTGGCAGGGATGCTTCAGCGGCTGGGGCG 1005
||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1034 CAACAAAGTCTAGGAGCTCAGCTTGCCCAGCTTGGCAGGGATGCTTCAGCTGCTGGGGCA 1093
Query 1006 GCTCGTCGTTTTACCACTCAGAAGAAGAGTATTGTAGAAATTGAATCAGTTGGTGTTGCT 1065
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1094 GCTCGTCGTTTTACCACTCAGAAGAAGAGTATTGTGGAGATTGAATCGGTTGGTGTTGCT 1153
Query 1066 GGTAAAACTGATACCCGTGTTAAGAAATTCTTTCGTCTAGAGTTTCTTGCTAAAGAACAA 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GGTAAAACTGATACCCGTGTTAAGAAATTCTTTCGTCTAGAGTTTCTTGCTAAAGAACAA 1213
Query 1126 GAACACACAGATGAAGATTTGGATGTCAAGGCTCTAGAAGATGGTTTCGTTTCCGTGACT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1214 GAACACACAGATGAAGATTTGGATGTCAAGGCTCTAGAAGATGGTTTCGTTTCTGTGACT 1273
Query 1186 CCATTTTCTCTCCTTCCAAAAACGGATTCAGAAACTCAAGCCGCAGCATCAGAATGGATC 1245
||||| ||| | |||||||| | ||||| || |||||||||||||||||||||||||||
Sbjct 1274 CCATTGTCTATACTTCCAAATATTGATTCGGACACTCAAGCCGCAGCATCAGAATGGATC 1333
Query 1246 TCCAAAGCCCTT-AACTCTGATCAATGAAAAAGGTCATACTCGTAAATTATGTTACATGA 1304
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1334 TCCAAAGCCCTTTAACTCTGATCAATGAAAAAGGTCATAATCGTAAATTATGTTACATGA 1393
Query 1305 TTTGGCCAAAACTCTCCCAACAAATCTGATTTACTGGATTCTGCAATTTGTTTGTTCTTG 1364
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1394 TTTGGCCAAAACTCTCCCAACAAATCTGATT-ACTGGATTCTGCA-TTTGTTTGTTCTTG 1451
Query 1365 TGGTCTTGTTGTCATCTTAACCCTTTTGTTTATTTTATTTATTTGATCTCCCTACAAGTC 1424
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 TGGTCTTGTTGTCAT-TTAACCCTTTTGTTTATTTTATTTATTTGATCTCCCTACAAGTA 1510
Query 1425 TGGGTTGCTCTTGTTGGCTTATTTGTTTGTCACTAGCTGTTTTAACCTTTGTAATCGGAA 1484
|||||||||||||||||||| ||||||||||| ||| | ||||| |||||||||| ||||
Sbjct 1511 TGGGTTGCTCTTGTTGGCTTGTTTGTTTGTCAGTAGTTTTTTTA-CCTTTGTAATTGGAA 1569
Query 1485 AAAAGGTCGGTCTGCGTTTTCTCTATTTCGAATTCAGACAATTTGTAAACCTTTTGATTG 1544
||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1570 AAAAGGTCGGTCTGCTTTTTCTCTATTTCGAATTCATACAATTTGTATACCTTTTGATTG 1629
Query 1545 AGAAGAACGATCTTTTACC 1563
|||||||||||||||||||
Sbjct 1630 AGAAGAACGATCTTTTACC 1648
Score = 115 bits (62), Expect = 9e-25
Identities = 62/62 (100%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1 CTCAAATTGTTACAGTTCACAAGTAATCTCTTCTTCAAGCTTTCTCTCTCTACCAATTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 CTCAAATTGTTACAGTTCACAAGTAATCTCTTCTTCAAGCTTTCTCTCTCTACCAATTAA 65
Query 61 AG 62
||
Sbjct 66 AG 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5