BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72890.2
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908901 jgi|Araly1|908901|Al_scaffold_0002_1982 1042 0.0
> Ahg908901 jgi|Araly1|908901|Al_scaffold_0002_1982
Length=1311
Score = 1042 bits (564), Expect = 0.0
Identities = 672/724 (93%), Gaps = 8/724 (1%)
Strand=Plus/Plus
Query 660 GGGAAGATGACTCGAAGCTGGTCGATGGAATTACTGAGAAGATATCAACAAAGTTGTTCT 719
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 551 GGGAAGATGACTCGAAGCTGGTCGACGGAATTACTGAGAAGATATCAAAAAAGTTGTTCT 610
Query 720 CGGAAAAACCAAGGAATGATAATATCCTAATTGGTATCGACCAACACATGGGGGAATTGT 779
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 611 CGGAAAAACCAAGGAATGATAATACCCTAATTGGGATCGACCAACACATGGGGGAATTGT 670
Query 780 ATCCACTATTTAACCTGAATTCGAATGAAGATGTTCAAGTCATTGGGATTTGGGGAAGAG 839
|||||||| || | |||||||| ||||||||||||| ||| |||||||||||||||||||
Sbjct 671 ATCCACTACTTCATCTGAATTCCAATGAAGATGTTCGAGTAATTGGGATTTGGGGAAGAG 730
Query 840 GAAGTAATGGTAGATCAGCACTAGCAAGCCACGTTTACCAAAACATCAAACATCACTTTG 899
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 731 GAAGTATTGGTAGATCAGCACTAGCAAACCACGTTTACCAAAACATCAAACATCACTTCG 790
Query 900 AAGCTCATTGTTTTCTCGAAGACGTGAGACGGATTTCGCTACATTTCCGTGACTCTCATT 959
||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||
Sbjct 791 AAGCTCATTGTTTTCTCGAAGACGTGAGACGGATTTCACTACATTGCCGCAAATCTCATT 850
Query 960 TACAAGATGAGCTTCTTTCAAATATGCAAGGAGAAGGTTTGACAACAAAGAACTGTCATA 1019
|||||||||||||||||| || |||||||||||||||||||||||||||| ||||| ||
Sbjct 851 TACAAGATGAGCTTCTTTTGAAGATGCAAGGAGAAGGTTTGACAACAAAGAGCTGTCGTA 910
Query 1020 GGTGTCTTAAGACTATCAAAGCAAGGCTAAGGAACAAGAAGGTTCTTCTTGTGGCGAACG 1079
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GGTGTCTTAAGACGATTAAAGCAAGGCTAAGGAACAAGAAGGTTCTTCTTGTGGCGAACG 970
Query 1080 ATGTAGACAAACTTGAACAATTTGATGCACTTGCTGAAGAATTTAGCTGGTTTGGTCCTG 1139
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 971 ATGTAGACAAGCTCGAACAATTCGATGCACTTGCTGAAGAATTTAGCTGGTTTGGTCCTG 1030
Query 1140 GAAGCAGAATCATCATAACCACACAAGATAGACAATTGCTTATTTCATCAGTAGTGAGGA 1199
| |||||||||||||| ||||||||||| || ||||||||| |||||||||| |||||||
Sbjct 1031 GGAGCAGAATCATCATTACCACACAAGACAGGCAATTGCTTGTTTCATCAGTGGTGAGGA 1090
Query 1200 GTGTCTACGAAGTTAAGCTCTTGAGATGTTACGCAGTTCGTGAGCTCTTTAGGTCAAATG 1259
|||||||||||||| |||| |||||||| |||| ||||||| |||||||||||||| |||
Sbjct 1091 GTGTCTACGAAGTTGAGCTGTTGAGATGCTACGAAGTTCGTCAGCTCTTTAGGTCAGATG 1150
Query 1260 CCTTCAAAGAAAGAGAAAGAGACGATCCTGTTGGGTTCGACCAGTCTACATATCGAGCCA 1319
|||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct 1151 CCTTCAAAGAAAGAGA------CGATCCTGTTGGTTTCGAGCAGTCTACATATCGAGCCA 1204
Query 1320 TGTATATATCAGGTCATGTGT-TTTTGACCTTGAGATATATTTTCACTTTGTTGTGTGAT 1378
||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1205 TGTATATTTCAGGTCATGT-TCTTTTGACCTTGAGATATATTTTCACTTTGTTGTGTGAC 1263
Query 1379 AGAG 1382
||||
Sbjct 1264 AGAG 1267
Score = 809 bits (438), Expect = 0.0
Identities = 521/561 (93%), Gaps = 6/561 (1%)
Strand=Plus/Plus
Query 32 atgaacacgatctttaaaaaa-tTATCCTGTTTTAAGAAAAAGGTTAAATCTTTACGAAT 90
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACACGATC-TTAAAAAACTTATCGTGTTTTAAGAAAAAGGTTAAATCTTTACGAAT 59
Query 91 ATTCGAATCCAGGTCACTCTCTTCTTCGTCTTCTTCCTCATTCACTCCTCAAA-AGTTCG 149
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 60 ATTCGAATCCAGGTCACTATCTTCTTCGTCTTCTTCCTCATTCACTCCTCAAATA-TTCG 118
Query 150 ACGTTTTTCTAAGCTTCAGAGGCAAAGATACTCGCAAGAACTTCGTCAGTTTTCTCTACA 209
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 119 ACGTTTTTCTAAGCTTCAGAGGCAAAGATACTCGCAAGAACTTCATCAGTTTTCTCCACA 178
Query 210 AGGCGCTAGTATCAAAAGGGATTCGAACTTTCAAAGACGACGAGGAATTGGAGAGAGGCC 269
||| ||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 179 AGGAGCTAGAATCAAAAGGGATTCGAACTTTCAAAGACGACAAGGAACTAGAGAGAGGCC 238
Query 270 GTCCGATTCCGCCGGAGCTTCGCCAAGCAATCAAAGGGTCGAGAATCGCCGTGGTCGTGG 329
|||||||| |||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 239 GTCCGATTTCGCCGGAGCTTCTCCAAGCAATCAAAGGGTCGAGAATCGCCGTCGTGGTGG 298
Query 330 TCTCTGT-AACTTACCCTGCCTCGTCCTGGTGTCTCGAAGAACTCAGGGAGATTCTGAAA 388
||||||| || |||| |||| |||| |||||||||||||||||||| ||||||| |||||
Sbjct 299 TCTCTGTGAA-TTACGCTGCTTCGTTCTGGTGTCTCGAAGAACTCAAGGAGATTTTGAAA 357
Query 389 CTTGAGAAGCTGGGTTTGCTCACTGTAATACCCATTTTCTATGAGATTAATCCTTCAGAC 448
|||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct 358 CTTGAGAATCAGGGTTTGCTCACTGTGATACCCATTTTCTATGAGATTGATCCTTCAGCC 417
Query 449 GTGAGGAGACAGAGCGGAGTAGTCTCAAAACAGTTCAAGAAGCATGAGAAGAGACAGAGC 508
||||||||||||| |||||||||| | ||||| ||||||||||||||||||||| | |||
Sbjct 418 GTGAGGAGACAGATCGGAGTAGTCGCGAAACATTTCAAGAAGCATGAGAAGAGAGAAAGC 477
Query 509 AGAGAAAGAGTCAAATCGTGGAGGGAAGCGTTGACCAAATTGGCTAGTCTCTCCGGCGAG 568
| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 478 AAAGAAAGAGTCAAATCGTGGAAGGAAGCGTTGAACAAATTGGCTAATCTCTCCGGCGAG 537
Query 569 TGTTCAAAGAATTGGGAAGAT 589
||||||||| |||||||||||
Sbjct 538 TGTTCAAAGGATTGGGAAGAT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57249638235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5