BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72910.1
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908904 jgi|Araly1|908904|Al_scaffold_0002_1985 1206 0.0
Ahg926659 jgi|Araly1|926659|scaffold_202220.1 427 9e-119
> Ahg908904 jgi|Araly1|908904|Al_scaffold_0002_1985
Length=1140
Score = 1206 bits (653), Expect = 0.0
Identities = 976/1123 (87%), Gaps = 57/1123 (5%)
Strand=Plus/Plus
Query 21 ATGTCTTCT-CATACTGCAACTAAGTACGATGTTTTCCTAAGTTTCAGAGGGCATGACAC 79
||||||| | | |||||| ||||||||||||||||| || | ||||||||| | ||||||
Sbjct 1 ATGTCTTGTGC-TACTGCGACTAAGTACGATGTTTTTCTGACTTTCAGAGGACTTGACAC 59
Query 80 TCGCCAG-AACTTCATCAGTTTTCTCTACAAAGAACTGGTTCGAAGG-AGCATTCGAACC 137
||||| | ||||||||||| ||||||||| ||||||||||||||||| || |||||||||
Sbjct 60 TCGCC-GCAACTTCATCAGCTTTCTCTACCAAGAACTGGTTCGAAGGAAG-ATTCGAACC 117
Query 138 TTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGTCGGAGCTCAAACGCACC 197
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 118 TTCAAAGACGACAAAGAGCTGAAGAATGGCCAGAGGATTTCGCCGGAGCTCAAACGCGCC 177
Query 198 ATCGAGGTGTCAAGATTCGCCGTCGTTGTTGTCTCAGAGACCTATGCTGCGTCTTC-TTG 256
||||| | ||| ||||||||||||||||||||||| ||| ||| |||||||| || |||
Sbjct 178 ATCGAAGAGTCGAGATTCGCCGTCGTTGTTGTCTCCCAGAACTACGCTGCGTC-TCGTTG 236
Query 257 GTGTCTCGATGAGCTCGT-AACGATCATGGATTTCGaaaaaaaGGGTTCCATCACCGTGA 315
||||||| | |||||||| || |||||||||||||||||| |||| ||| ||||||||||
Sbjct 237 GTGTCTCAAAGAGCTCGTGAA-GATCATGGATTTCGAAAACAAGGATTCGATCACCGTGA 295
Query 316 TGCCCATCTTCTACGGCGTGGAACC-G--AATCATGTGAGGTGGCAGACCGGAGTACTCG 372
| ||||||||||||||||||||||| | ||||||||| |||||||||||||| |||
Sbjct 296 TACCCATCTTCTACGGCGTGGAACCGGCCGGTCATGTGAGATGGCAGACCGGAGTTGTCG 355
Query 373 CTGAACAGTTTAAGAAACATGGGAGTAGAGAAGATCATGAGAAAGTGCTTAAATGGAGGC 432
||||||| |||||||| |||| |||||||||| | ||||||||||||||| |||||||||
Sbjct 356 CTGAACATTTTAAGAAGCATGAGAGTAGAGAAAAGCATGAGAAAGTGCTTCAATGGAGGC 415
Query 433 AAGCATTGACCAATTTTGCGCAACTCTCCGGCGATTGTTCAGGTGATGATGACTCGAAGC 492
|||| ||| || |||||||||||| ||||||||||||||||| | |||||||||||| |
Sbjct 416 AAGCGTTGGCCGCTTTTGCGCAACTATCCGGCGATTGTTCAGGGGTTGATGACTCGAACC 475
Query 493 TGGTGGACAAAATTGCTAACGAGATATCAAACAAGAAGACGATTTATGCAACAATAAACA 552
|||| | ||| ||||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct 476 TGGT---C------GCTCACGAGATATCAAAAAAGAAGAAGATTTTTGCAACAATAAGCA 526
Query 553 ATGGGAAGAATCTAGTTGGGATTGATACACACATGAAGGAACTAAACCGATTAA-TGCAT 611
|||||||||| |||||||||||||||||||||||||||||||| || | | || || ||
Sbjct 527 ATGGGAAGAACCTAGTTGGGATTGATACACACATGAAGGAACTTAA-CAAAAAATTGGAT 585
Query 612 ATGAATTGCAACAAAGTTACTGTAAGAATGGTTGGGATTTGGGCAAGAGGAGGCGATGGT 671
|||||| |||||||| | ||| |||||||||||||||||| |||||||||||||||||
Sbjct 586 TTGAATTCCAACAAAG--A-TGTGAGAATGGTTGGGATTTGGACAAGAGGAGGCGATGGT 642
Query 672 AGATCAGCTCTAGCTAAATATGTTTATCA-GACATCTTGTCAACAGTTTGACAGCCATTG 730
||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 643 AGATCGGCTCTAGCTAAATATGTTTATCAGGACATC-TGTCAACAGTTTGACAGTCATTG 701
Query 731 TTTTCTTGGAAACGTGAAAACGATTTCTCAGGGTCGCCACTCAGCGCATCTACACGACGA 790
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 702 TTTTCTGGGAAACGTGAAAACGATTTCTCAGGGTCGCCACTCAGCGCATCTACACCACGA 761
Query 791 GTTTCTG-AGAAATATTAAAAGAGAAGACTCTAACAAACAATGTCTTAAGAATCAAAAGG 849
||||||| | ||||||| |||||||| || ||||||||||| |||| ||||| |||||||
Sbjct 762 GTTTCTGCA-AAATATTCAAAGAGAAAACCCTAACAAACAAAGTCTCAAGAACCAAAAGG 820
Query 850 TTCTGCTTGTGGCAGACAACGTT-ACTAAGGTTAAACAGTTAGAAGCTCTTGCAGGGGAT 908
||||||||||||||||| |||| | |||| || ||||||||||||||||||||||||||
Sbjct 821 TTCTGCTTGTGGCAGACGACGTCGA-TAAGCTTGAACAGTTAGAAGCTCTTGCAGGGGAT 879
Query 909 TTCAGCAGTTTTGGTCCTGGGAGTGTTGTTATTATCACTACAGACA-ACAAGGGGTTGTT 967
||||||||||||||||| |||||||||||||| ||||||||| | | ||||| ||||||
Sbjct 880 TTCAGCAGTTTTGGTCCGGGGAGTGTTGTTATCATCACTACACA-AGACAAGCAGTTGTT 938
Query 968 GAATTCTTATGGTATAACAGATGTCTACGAAGTTGAGCATTTGA-AGT--------TTTG 1018
|| |||||||||||||| ||||||||||||||| ||| |||||| | | ||||
Sbjct 939 GACTTCTTATGGTATAAAAGATGTCTACGAAGTAGAGTATTTGACATTCCAGAAAGTTTG 998
Query 1019 TGGAA-TCTT---ACGATCA-TTGGGCTTTAAAAAGAGAG-C-T----GCTGCGTTCCAG 1067
| || |||| |||| || || | |||||||||||||| | | |||||| ||| |
Sbjct 999 TC-AACTCTTCCGACGA-CAATTCGCCTTTAAAAAGAGAGACATTTCTGCTGCGATCCGG 1056
Query 1068 CGGGCTTTGTGTAGAGCAAAGAGTTTTGCCACGGAATGTTTTT 1110
||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1057 CGGGCTTTGTGTAGAGCAACGAATTTTGCCACGGAATGTTTTT 1099
> Ahg926659 jgi|Araly1|926659|scaffold_202220.1
Length=372
Score = 427 bits (231), Expect = 9e-119
Identities = 302/335 (90%), Gaps = 10/335 (3%)
Strand=Plus/Plus
Query 4 GAGAATCAAAAATCAAAATGTCTTCT-CATACTGCAACTAAGTACGATGTTTTCCTAAGT 62
|||||||| ||||||||||||||||| | |||||| ||||||||||||||||| || |||
Sbjct 5 GAGAATCAGAAATCAAAATGTCTTCTGC-TACTGCGACTAAGTACGATGTTTTTCTGAGT 63
Query 63 TTCAGAGGGCAT-GACACTCGCCAG-AACTTCATCAGTTTTCTCTACAAAGAACTGGTTC 120
|||||||| | | |||||||| ||| | ||||||||| ||||||||||||||||| ||||
Sbjct 64 TTCAGAGGAC-TCGACACTCG-CAGCACCTTCATCAGCTTTCTCTACAAAGAACTAGTTC 121
Query 121 GAAGGAGCATTCGAACCTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGT 180
||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GAATGAACATTCGAACTTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGC 181
Query 181 CGGAGCTCAAACGCA-CCATCGAGGTGTCAAGATTCGCCGTCGTTGTTGTCTCAGAGACC 239
||||||||||||| | ||||||||| ||| |||||||||||||||||| |||| |||| |
Sbjct 182 CGGAGCTCAAACG-AGCCATCGAGGAGTCGAGATTCGCCGTCGTTGTTTTCTCCGAGAAC 240
Query 240 TATGCTGCGTCTTCTTGGTGTCTCGATGAGCTCGT-AACGATCATGGATTTCGaaaaaaa 298
|| ||||||||| ||||||||||||| |||||||| || |||||||||||| || || ||
Sbjct 241 TACGCTGCGTCTCCTTGGTGTCTCGAAGAGCTCGTGAA-GATCATGGATTTAGAGAACAA 299
Query 299 GGGTTCCATCACCGTGATGCCCATCTTCTACGGCG 333
|||||||||||||||||||||||||||||||||||
Sbjct 300 GGGTTCCATCACCGTGATGCCCATCTTCTACGGCG 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53097801530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5