BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72920.1
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908905 jgi|Araly1|908905|Al_scaffold_0002_1986 1057 0.0
Ahg908906 jgi|Araly1|908906|Al_scaffold_0002_1987 780 0.0
Ahg908904 jgi|Araly1|908904|Al_scaffold_0002_1985 660 0.0
Ahg926659 jgi|Araly1|926659|scaffold_202220.1 457 9e-128
> Ahg908905 jgi|Araly1|908905|Al_scaffold_0002_1986
Length=1137
Score = 1057 bits (572), Expect = 0.0
Identities = 656/698 (94%), Gaps = 0/698 (0%)
Strand=Plus/Plus
Query 20 ATGTCTTCTCCTACTGCGACTAAGTACGACGTCTTTCTGAGTTTCAGAGGACTCGACACT 79
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCTGCTACTGCGACGAAGTACGATGTCTTTCTGAGTTTCAGAGGACTCGACACT 60
Query 80 CGTCGCAACTTCATCAGTTTTCTCTACAAAGAACTCGTTCGAAGAAAAATTCGAACTTTC 139
||||||||||||||||||||||||||||||||| | ||||||||||| ||||| || |||
Sbjct 61 CGTCGCAACTTCATCAGTTTTCTCTACAAAGAATTGGTTCGAAGAAACATTCGTACCTTC 120
Query 140 AAAGACGACAAGGAGCTCGAGAATGGCCGGAGGATTTCTCCGGAGCTCAAACGCGCCATC 199
||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AAACACGACAAGGAGCTTGAGAATGGCCGGAGGATTTCGCCGGAGCTCAAACGCGCCATC 180
Query 200 GAGGAGTCGAAATTCGCCGTCGTTGTGGTCTCTGTGAACTACGCTGCGTCTCCTTGGTGT 259
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 181 GAGGAGTCGAAATTCGCCGTCGTTGTTGTCTCTGTGAATTACGCTGCGTCTCCTTGGTGT 240
Query 260 CTCGATGAGCTTGTGAAGATTATGGATTTCGAAAACAAGGGTTCCATCACCGTGATGCCT 319
||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 241 CTCGATGAGCTCGTGAAGATCATGGATTTCGAAAACAAGGGTTCGATCACTGTGATGCCT 300
Query 320 ATCTTCTACGGCGTGGATCCTTGTCATTTGAGGAGGCAGATCGGAGATGTCGCTGAACAG 379
||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 301 ATCTTCTACGGAGTGGATCCGTGTCATTTGAGGAGACAGAGCGGAGATGTCGCTGAACAG 360
Query 380 TTTAAGAAGCACGAGGCTAGAGAAGAAGATCATGAGAAAGTAGCTTCGTGGAGACGAGCA 439
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 361 TTTAAGAAGCACGAGGCTAGAGAAGAAGATCTTGATAAAGTAGCTTCATGGAGACGAGCA 420
Query 440 TTGACCAGTTTAGCGAGTATCTCCGGCGAATGTTCATTGAAATGGGAAGATGAAGCGAAT 499
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 421 TTGACCAGTTTGGCGAGTATCTCCGGCGATTGTTCATTGAAATGTGAAGATGAATCGAAG 480
Query 500 CTGGTGGACGAAATTGCTGACAAGATATCAAAAAATCTGATGACTGTTACAACAATAAGC 559
||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 481 CTGGTCGACGAAATTGCTGACAAGATATCAAAAAAGCTGATGATTGTGACAACAATAAGC 540
Query 560 AATGGGAGGGACCTAGTTGGGATTGATACACACATGAAGGCTCTTAACAAAAAATTGGAT 619
|||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 541 AATGGGAGTAACCTAGTTGGGATTGATAGACACATGAAGGCTCTTAACCGAAAATTGGAT 600
Query 620 TTGAATTCCAACAAAAGTTTGAGAGTGGTTGGGATTTGGGCAAGAGGATACAATGGTAGA 679
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGAATTCCAACAAAGGTTTGAGAGTGGTTGGGATTTGGGCAAGAGGATACAATGGTAGA 660
Query 680 TCAGCTTTAGCTAAATATGTTTATCAAGACATCTGTCA 717
|| ||||||||||||||||||||||| || ||||||||
Sbjct 661 TCGGCTTTAGCTAAATATGTTTATCAGGAAATCTGTCA 698
> Ahg908906 jgi|Araly1|908906|Al_scaffold_0002_1987
Length=1122
Score = 780 bits (422), Expect = 0.0
Identities = 589/670 (88%), Gaps = 10/670 (1%)
Strand=Plus/Plus
Query 53 TTTCTGAGTTTCAGAGGACTCGACACTCGTCGCAACTTCATCAGTTTTCTCTACAAAGAA 112
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 40 TTTCTGAGTTTCAGAGGACTCGACACTCGCCGCAACTTCATCAGTTTCCTCTACAACGAA 99
Query 113 CTCGTTCGAAGAAAAATTCGAACTTTCAAAGACGACAAGGAGCTCG-AGAATGGCCGGAG 171
|| || |||||||| ||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 100 CTGGTCCGAAGAAACATTCGAACTTTCAAAGACGACAAGGAG-TTGAAGAATGGCCGGAG 158
Query 172 GATTTCTCCGGAGCTCAAACGCGCCATCGAGGAGTCGAAATTCGCCGTCGTTGTGGTCTC 231
|||| | ||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 159 GATTACGCCGGAGCTCGTACGCGCCATCGAGGGGTCGAAATTCGCCGTCGTTGTGGTCTC 218
Query 232 TGTGAACTACGCTGCGTCTCCTTGGTGTCTCGATGAGCTTGTGAAGATTATGGATTTCGA 291
|||||| ||||||||||||| |||||||||||| ||||| |||||||| |||||||||||
Sbjct 219 TGTGAATTACGCTGCGTCTCGTTGGTGTCTCGAGGAGCTCGTGAAGATCATGGATTTCGA 278
Query 292 AAACAAGGGTTC-CATCACCGTGATGCCTATCTTCTACGGCGTGGATCCTTGTCATTTGA 350
||||||||| || | ||| ||||||||||||||||||||||| ||||| |||||| |||
Sbjct 279 AAACAAGGGATCGC-TCAAGGTGATGCCTATCTTCTACGGCGTAGATCCGTGTCATGTGA 337
Query 351 GGAGGCAGATCGGAGAT-GTCGCTGAACAGTTTAAGAAGCACGAGGCTAGAGAAGAAGAT 409
||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 338 GGAGGCAGACCGGAG-TAGTCGCTGAACAGTTTAAGAAGCATGAGGCTAGAGAAGGAGAT 396
Query 410 CATGAGAAAGTAGC-TTCGTGGAGACGAGCATTGACCAGTTTAGCGAGTATCTCCGGCGA 468
|| |||||||| || ||| ||||| | ||||||||||| ||| |||||||||||||||||
Sbjct 397 CACGAGAAAGT-GCTTTCATGGAGGCAAGCATTGACCAATTTGGCGAGTATCTCCGGCGA 455
Query 469 ATGTTCATTGAAATGGGAAGATGAAGCGAATCTGGTGGACGAAATTGCTGACAAGATATC 528
||||||| ||| ||||||||||| |||| |||| ||||||||| |||||| ||||||
Sbjct 456 TTGTTCATGGAAGTGGGAAGATGACTCGAAGATGGTCGACGAAATTACTGACAGGATATC 515
Query 529 AAAAAATCTGATGACTGTTACAACAATAAGCAATGGGAGGGACCTAGTTGGGATTGATAC 588
|||| | ||||||| || |||||||| | |||||||||| || || | ||||||| | |
Sbjct 516 AAAAGAGCTGATGATTGATACAACAAGACGCAATGGGAGTGATCTTGAGGGGATTGCTGC 575
Query 589 ACACATGAAGGCTCTTAACAAAAAATTGGATTTGAATTCCAACAAAAGTTTGAGAGTGGT 648
||||||||| |||||| || | | || |||||||||| || || ||| |||||||| |
Sbjct 576 ACACATGAAAGCTCTTCACCGATTACTGAATTTGAATTCTAAGAAGAGTGTGAGAGTGAT 635
Query 649 TGGGATTTGGGCAAGAGGATACAATGGTAGATCAGCTTTAGCTAAATATGTTTATCAAGA 708
||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||
Sbjct 636 TGGGATTTGGGCAAGAGGATACAATGGTAGATCGGCTCTAGCTAAATTTGTTTATCA-GA 694
Query 709 -CATCTGTCA 717
|||||||||
Sbjct 695 ACATCTGTCA 704
> Ahg908904 jgi|Araly1|908904|Al_scaffold_0002_1985
Length=1140
Score = 660 bits (357), Expect = 0.0
Identities = 597/708 (84%), Gaps = 35/708 (5%)
Strand=Plus/Plus
Query 20 ATGTCTTCTCCTACTGCGACTAAGTACGACGTCTTTCTGAGTTTCAGAGGACTCGACACT 79
||||||| | ||||||||||||||||||| || ||||||| |||||||||||| ||||||
Sbjct 1 ATGTCTTGTGCTACTGCGACTAAGTACGATGTTTTTCTGACTTTCAGAGGACTTGACACT 60
Query 80 CGTCGCAACTTCATCAGTTTTCTCTACAAAGAACTCGTTCGAAGAAAAATTCGAACTTTC 139
|| |||||||||||||| ||||||||| ||||||| |||||||| || |||||||| |||
Sbjct 61 CGCCGCAACTTCATCAGCTTTCTCTACCAAGAACTGGTTCGAAGGAAGATTCGAACCTTC 120
Query 140 AAAGACGACAAGGAGCTCG-AGAATGGCCGGAGGATTTCTCCGGAGCTCAAACGCGCCAT 198
||||||||||| ||||| | ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 121 AAAGACGACAAAGAGCT-GAAGAATGGCCAGAGGATTTCGCCGGAGCTCAAACGCGCCAT 179
Query 199 CGAGGAGTCGAAATTCGCCGTCGTTGTGGTCTCTGTGAACTACGCTGCGTCTCCTTGGTG 258
||| ||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 180 CGAAGAGTCGAGATTCGCCGTCGTTGTTGTCTCCCAGAACTACGCTGCGTCTCGTTGGTG 239
Query 259 TCTCGATGAGCTTGTGAAGATTATGGATTTCGAAAACAAGGGTTCCATCACCGTGATGCC 318
|||| | ||||| |||||||| ||||||||||||||||||| ||| ||||||||||| ||
Sbjct 240 TCTCAAAGAGCTCGTGAAGATCATGGATTTCGAAAACAAGGATTCGATCACCGTGATACC 299
Query 319 TATCTTCTACGGCGTGG-ATC--CTTGTCATTTGAGGA-GGCAGATCGGAGATGTCGCTG 374
|||||||||||||||| | | | ||||| ||| || |||||| ||||| ||||||||
Sbjct 300 CATCTTCTACGGCGTGGAACCGGCCGGTCATGTGA-GATGGCAGACCGGAGTTGTCGCTG 358
Query 375 AACAGTTTAAGAAGCACGAG-GCTAGAGAAGAAGATCATGAGAAAGTAGCTTC-GTGGAG 432
|||| ||||||||||| ||| | ||||||| ||| ||||||||||| ||||| |||||
Sbjct 359 AACATTTTAAGAAGCATGAGAG-TAGAGAA-AAG--CATGAGAAAGT-GCTTCAATGGAG 413
Query 433 ACGAGCATTGACCAG-TTTAGCGAGTA-TCTCCGGCGAATGTTCATTGAAATGGGAAGAT 490
| ||| ||| || | ||| ||| | | |||||||| |||||| | ||| |||
Sbjct 414 GCAAGCGTTGGCC-GCTTTTGCG-CAACTATCCGGCGATTGTTCA--G----GGGTTGAT 465
Query 491 GAAGCGAATCTGGTGGACGAAATTGCTGACAAGATATCAAAAAATCTGATGACTGTTACA 550
|| |||| ||||| | ||| || ||||||||||||| || || | || ||
Sbjct 466 GACTCGAACCTGGT---C------GCTCACGAGATATCAAAAAAGAAGAAGATTTTTGCA 516
Query 551 ACAATAAGCAATGGGAGGGACCTAGTTGGGATTGATACACACATGAAGGCTCTTAACAAA 610
|||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 517 ACAATAAGCAATGGGAAGAACCTAGTTGGGATTGATACACACATGAAGGAACTTAACAAA 576
Query 611 AAATTGGATTTGAATTCCAACAAAAGTT-TGAGAGTGGTTGGGATTTGGGCAAGAGGATA 669
|||||||||||||||||||||||| | | ||||| |||||||||||||| ||||||||
Sbjct 577 AAATTGGATTTGAATTCCAACAAA-GATGTGAGAATGGTTGGGATTTGGACAAGAGGAGG 635
Query 670 CAATGGTAGATCAGCTTTAGCTAAATATGTTTATCAAGACATCTGTCA 717
| |||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 636 CGATGGTAGATCGGCTCTAGCTAAATATGTTTATCAGGACATCTGTCA 683
> Ahg926659 jgi|Araly1|926659|scaffold_202220.1
Length=372
Score = 457 bits (247), Expect = 9e-128
Identities = 305/333 (92%), Gaps = 4/333 (1%)
Strand=Plus/Plus
Query 2 AGAGAATCAAAAATCAAAATGTCTTCTCCTACTGCGACTAAGTACGACGTCTTTCTGAGT 61
||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 4 AGAGAATCAGAAATCAAAATGTCTTCTGCTACTGCGACTAAGTACGATGTTTTTCTGAGT 63
Query 62 TTCAGAGGACTCGACACTCGTC-GCAACTTCATCAGTTTTCTCTACAAAGAACTCGTTCG 120
|||||||||||||||||||| | ||| ||||||||| ||||||||||||||||| |||||
Sbjct 64 TTCAGAGGACTCGACACTCG-CAGCACCTTCATCAGCTTTCTCTACAAAGAACTAGTTCG 122
Query 121 AA-GAAAAATTCGAACTTTCAAAGACGACAAGGAGCTCGAGAATGGCCGGAGGATTTCTC 179
|| | || ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
Sbjct 123 AATG-AACATTCGAACTTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGC 181
Query 180 CGGAGCTCAAACGCGCCATCGAGGAGTCGAAATTCGCCGTCGTTGTGGTCTCTGTGAACT 239
||||||||||||| |||||||||||||||| ||||||||||||||| |||| | |||||
Sbjct 182 CGGAGCTCAAACGAGCCATCGAGGAGTCGAGATTCGCCGTCGTTGTTTTCTCCGAGAACT 241
Query 240 ACGCTGCGTCTCCTTGGTGTCTCGATGAGCTTGTGAAGATTATGGATTTCGAAAACAAGG 299
||||||||||||||||||||||||| ||||| |||||||| |||||||| || |||||||
Sbjct 242 ACGCTGCGTCTCCTTGGTGTCTCGAAGAGCTCGTGAAGATCATGGATTTAGAGAACAAGG 301
Query 300 GTTCCATCACCGTGATGCCTATCTTCTACGGCG 332
||||||||||||||||||| |||||||||||||
Sbjct 302 GTTCCATCACCGTGATGCCCATCTTCTACGGCG 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5