BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72960.1
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908907 jgi|Araly1|908907|Al_scaffold_0002_1988 3579 0.0
Ahg478791 jgi|Araly1|478791|fgenesh2_kg.3__1492__AT3G13870.1 1234 0.0
Ahg494463 jgi|Araly1|494463|fgenesh2_kg.8__279__AT5G45160.1 427 2e-118
> Ahg908907 jgi|Araly1|908907|Al_scaffold_0002_1988
Length=2223
Score = 3579 bits (1938), Expect = 0.0
Identities = 2150/2249 (96%), Gaps = 28/2249 (1%)
Strand=Plus/Plus
Query 169 ATGGGTCCTCAAAGTAGCGGGAAAAGTACACTATTGAACCATTTGTTTGGAACAAACTTT 228
|||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 1 ATGGGTCCTCAAAGCAGTGGGAAGAGTACATTATTGAATCATTTGTTTGGAACAAACTTT 60
Query 229 ATGGAGATGGATGCATTCAAGGGAAGGTCTCAGACCACAAAAGGTATCTGGCTTGCAAGA 288
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGGAGATGGATGCATTTAAGGGAAGGTCTCAGACCACAAAAGGTATCTGGCTTGCAAGA 120
Query 289 TGTGCCGGTATAGAGCCTTGCACCCTTGTAATGGATTTAGAGGGCACCGATGGCAGAGAG 348
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 TGTGCCGGTATAGAGCCTTGCACCCTTGTAATGGATTTGGAGGGCACCGATGGAAGAGAG 180
Query 349 CGAGGAGAGGATGATACGGCATTCGAAAAACAGAGTGCTCTTTTCGCTCTTGCTATCTCT 408
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 CGAGGAGAGGATGATACGGCATTCGAAAAACAGAGTGCCCTTTTCGCTCTTGCTATCTCG 240
Query 409 GATATCGTCTTGATCAACATGTGGTGTCACGACATTGGCCGTGAACAAGCTGCTAATAAA 468
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GATATCGTCTTGATCAACATGTGGTGTCACGATATTGGCCGTGAACAAGCTGCTAATAAA 300
Query 469 CCTCTCTTGAAAACTGTCTTTCAGGTGATGATGCGATTGTTTAGTCCACGTAAAACAACA 528
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CCTCTCTTGAAAACTGTCTTTCAGGTTATGATGCGATTGTTTAGTCCACGTAAAACAACA 360
Query 529 ATGCTGTTTGTAATACGAGATAAAACCCGGACACCGTTGGAAAATTTAGAGCCTGTCTTA 588
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 361 ATGTTGTTTGTAATACGAGATAAAACCCGGACGCCGTTGGAAAATTTAGAGCCTGTGTTA 420
Query 589 AGAGAAGATATTCAGAAGATATGGGATTCTGTTCCAAAGCCTGAAGCACACAAGGAAACT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAGAAGATATTCAGAAGATATGGGATTCTGTTCCAAAGCCTGAAGCACACAAGGAAACT 480
Query 649 CCTCTAAGTGACTTTTTCAATGTTGAAGTTGTTGCTCTTTCCAGTTATGAGGAGAAGGAA 708
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTCTAAGCGACTTTTTCAATGTTGAAGTTGTTGCTCTTTCCAGTTATGAGGAGAAGGAA 540
Query 709 GAACAGTTTAAAGAGCAGATTGCTAGTTTGAGACAACGGTTCATGCATTCTATTGCACCG 768
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAACAATTTAAAGAGCAGGTTGCTAGTTTGAGACAACGGTTCATGCATTCTATTGCACCG 600
Query 769 GGAGGTCTTGCTGGAGACAGAAGAGGAGTGATTCCAGCCTCAGGTTTTGCATTTAGTGCA 828
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTGGTCTTGCTGGAGACAGAAGAGGAGTGATTCCAGCCTCAGGTTTTGCATTTAGTGCA 660
Query 829 GATCAGATCTGGAGAGTCATCAAAGAGAATAAGGATCTTGACCTTCCAGCCCACAAGGTC 888
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GATCAAATCTGGAGAGTCATCAAAGAAAATAAGGATCTTGACCTTCCAGCCCACAAGGTC 720
Query 889 ATGGTGGCTACTGTGCGGTGCGAAGAAATTGCAAATGAGAAGTTTGCGCATTTCATTACA 948
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGGTAGCTACTGTGCGGTGTGAAGAAATTGCAAATGAGAAGTTTGCGCATTTCATTACA 780
Query 949 AACGAGGACTGGCGCAAACTGGATGAGGAGGTGCAAGCCGGTCCAGTTTCTAATTTTGGA 1008
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AACGAGGACTGGCGCCAACTGGATGAGGAGGTGCAAGCTGGTCCAGTTTCTAATTTTGGA 840
Query 1009 AAGAGGCTTACTACCATTCTCGGTTCTTGCTTATCAGAATATGACGGGGAGGCTACATTC 1068
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGAGGCTTACTACCATTCTCGGATCTTGCTTATCAGAATATGACGGGGAGGCTACATTC 900
Query 1069 TTCGATGAAGGTGTCAGATCTTCGAAGAGACAGCAGCTTGAAGAAAAGCTTCTCCAACTT 1128
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 901 TTCGATGAAGGTGTCAGATCTTCGAAGAGACAACAGCTTGAAGAAAAGCTTCTCCAACTA 960
Query 1129 GTGAATCCAGCGTTTCAAGATGTATTGGGACATATAAGATGGGGAATACTTGAAAAGTTT 1188
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 961 GTGAATCCAGCGTTTCAAGATGTATTGGGACATATAAGATGGGGAATGCTTGAGAAGTTT 1020
Query 1189 AAGGCTTCTTTTGATAAGGCTTTAGGCATTGGTGAAGGGTTTTCTTCAGCTTCCCAAGAT 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAGGCTTCTTTTGATAAGGCTTTAGGCATTGGTGAAGGGTTTTCTTCAGCTTCCCAAGAT 1080
Query 1249 TGGTTCAAGGCTTGCATGACCCAATTCGATGAAGAGTGTGCAGGTGCCATCATTGAACAA 1308
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGGTTCAAGACTTGCATGACCCAATTCGATGAAGAGTGTGCAGGTGCCATCATTGAACAA 1140
Query 1309 GCCAATTGGGACACATCAAAAGTACGGGACAAGCTAGTACGTGACATTGAGGCTCACATT 1368
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 1141 GCCAATTGGGACACATCGAAAGTACGGGACAAGCTCGTCCGTGACATTGAGGCTCACATT 1200
Query 1369 TCCTCTGTGCGGACTTCCAAGTTATCTGAACTTACCAGTCTATACGAGTCAAAAGTTCAT 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TCCTCTGTGCGGACTTCCAAGTTATCTGAACTTACCAGTCTATACGAGTCAAAAGTTCAT 1260
Query 1429 GAAGCTTTATCAGAACCGGTGGAAGCTTTGTTGGATGGAGCCAACGATGAAACGTGGAGC 1488
||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
Sbjct 1261 GAAGCATTATCAGAACCGGTGGAAGCTCTGTTGGAAGGAGCCAACGATGAAACGTGGA-C 1319
Query 1489 A-CAGTAAAGAAGCTTCATCGGCGTGAAACTGAATCTGCAGTATCTGGACTCAGTAGTGC 1547
| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1320 AACAGTAAAGAAGCTTCATCGGCGTGAAACTGAATCTGCAGTTTCTGGACTCAATAGTGC 1379
Query 1548 ATTAGCTGGTTTTGACATGGAAGAAGAAACAAGAGATAGAATGGTGAAGAGCCTTCAGGA 1607
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ACTAGCTGGTTTTGACATGGAAGAAGAAACAAGAGATAGAATGGTGAAGAGCCTTCAGGA 1439
Query 1608 TTATGCAAGAGGTGTCATTGAAACGAAGGCAAAAGAAGAGGCTGTG-CGGGTTTTGATGC 1666
|||| ||||||||||||||||||| |||||||||||||| |||| | |||||||||||||
Sbjct 1440 TTATTCAAGAGGTGTCATTGAAACTAAGGCAAAAGAAGAAGCTG-GACGGGTTTTGATGC 1498
Query 1667 GTATGAAGGAAAGGTTTGGTACAATCTTCAGCCATGATTCTGATTCAATGCCACGTGTTT 1726
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1499 GTATGAAGGAAAGGTTTGCTACAATCTTCAGCCATGATTCTGATTCAATGCCTCGTGTTT 1558
Query 1727 GGACCGGAAAAGAGGATCTTCGAGCAATTACTAAATCAGCTCGATCTGCTTCCTTGAAGT 1786
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1559 GGACCGGAAAAGAGGATCTTCGTGCCATTACTAAATCAGCTCGATCTGCTTCCTTGAAGT 1618
Query 1787 TGCTCTCAGTAATGGCTGTCATTCGATTGGGGGATGAACCTGATAACATCGAGAAGACAC 1846
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1619 TGCTCTCAGTAATGGCTGTAATTCGATTGGGGGATGAACCCGATAACATCGAGAAGACAC 1678
Query 1847 TAACTGTAGCTCTGCTGGATCCAACAAAGAATGATACTTCTAAGAAAAGCATCACAACAT 1906
||| ||| |||||| ||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1679 TAAATGTTGCTCTGTTGGATCCAACAAAGAATGAAACTTCTAAAAAAAGCATTACAACAT 1738
Query 1907 CTGATCCACTGGCTTCAAGCACTTGGGATGAGGTTCCATCATCAAGAACTTTGATCACAC 1966
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1739 CTGATCCACTGGCTTCAAGCACTTGGGATGAGATTCCATCATCAAGAACTTTGATCACAC 1798
Query 1967 CGGTGCAATGTAAATCTATATGGAGACAGTTCAAGACAGAAACAGAGTATACAGTGACTC 2026
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1799 CGGTGCAATGTAAATCTATATGGAGACAGTTCAAGACAGAAACAGAGTATACAG--A--- 1853
Query 2027 AAGCCATATCCGCACAGGAGGCGAACAGGCGTGGAAATAACTGGTTACCTCCTCCATGGG 2086
| || | | | | | |||||||||||||||||||||||||||||||||
Sbjct 1854 A-GC-------G-A-A-----C-A---GGCGTGGAAATAACTGGTTACCTCCTCCATGGG 1894
Query 2087 CAATTCTTGCATTGATCGTCCTTGGATTCAACGAATTCATGACTCTTTTAAGAAACCCTC 2146
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1895 CAATTCTTGCATTGATCGTGCTTGGATTCAACGAATTCATGACTCTTCTAAGAAACCCTC 1954
Query 2147 TCTATCTTGGTGTCATGTTTGTCGCTTTCCTTCTGGCAAAAGCACTGTGGACGCAATTGG 2206
||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1955 TCTATCTCGGTGTCATCTTTGTCGCTTTCCTTCTGGTAAAAGCACTGTGGACGCAATTGG 2014
Query 2207 ATATCCCTGGCGAATTCCGCAATGGTGCACTTCCAGGGCTCATATCGATATCCGCAAAGT 2266
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2015 ATATCCCTGGCGAATTCCGCAATGGTGCACTTCCAGGGCTCATATCGATATCAGCAAAGT 2074
Query 2267 TTGTTCCCACAGTAATGAACCTTATCAAGAACCTTGCAGCGCAAGGCGAAGACCCTCCTG 2326
|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2075 TTGTTCCCACGGTCATGAACCTTATCAAGAACCTTGCAGCGCAAGGCGAAGTCCCTCCTG 2134
Query 2327 CAGCTAATCCAGAGAACCGTCGTTCGAGCAACAACACTTCTTCATCAGAAAATCCACCAG 2386
| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2135 CGGCTAATCCAGAGAGCCGTCGTTCGAGCAACAACACTTTTTCATCAGAAAATCCACCAT 2194
Query 2387 ATCACAAAAGCTCCTCAAAAGAGGACTAA 2415
|| | ||||||||||||||||||||||||
Sbjct 2195 ATAAAAAAAGCTCCTCAAAAGAGGACTAA 2223
> Ahg478791 jgi|Araly1|478791|fgenesh2_kg.3__1492__AT3G13870.1
Length=2877
Score = 1234 bits (668), Expect = 0.0
Identities = 1727/2226 (78%), Gaps = 122/2226 (5%)
Strand=Plus/Plus
Query 64 CAGCTCATCGACGGAGATGGTATATACAATGTCTCTCGCATCGATCATTTCATTAAAGAT 123
||||| ||||| ||||||||| | | ||||| ||| | | ||||||||||| || ||
Sbjct 172 CAGCTTATCGATGGAGATGGTGTCTTTAATGTTTCTGGGGTTGATCATTTCATCAAGGAG 231
Query 124 GTGAAACTT-GCAGACTGTGGCCTTTCTTATGCTGTTGTCTCTATTATGGGTCCTCAAAG 182
|| ||| || | ||| ||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct 232 GTTAAA-TTGGAAGAATGTGGTCTTTCATATGCGGTTGTCTCGATTATGGGTCCACAAAG 290
Query 183 TAGCGGGAAAAGTACACTATTGAACCATTTGTTTGGAACAAACTTTATG-GAGATGGATG 241
||||||||| |||||||| ||||| |||||||||||||| ||||||| | || |||||||
Sbjct 291 TAGCGGGAAGAGTACACTCTTGAATCATTTGTTTGGAACCAACTTTA-GAGAAATGGATG 349
Query 242 CATTCAAG-GGAAGGTCTCAGACCACAAAAGGTATCTGGCTTGCAAGATGTGCCGGTATA 300
|||| || |||||||||||||| || || || || ||| |||| ||||| || |||||
Sbjct 350 CATT-TAGAGGAAGGTCTCAGACAACTAAGGGAATTTGGATTGCTAGATGCGCTGGTATT 408
Query 301 GAGCCTTGCACCCTTGTAATGGATTTAGAGGGCACCGATGGCAGAGAGCGAGGAGAGGAT 360
|||||||||||| |||| |||||||||||||| |||||||| |||||||| || ||||||
Sbjct 409 GAGCCTTGCACCGTTGTGATGGATTTAGAGGGTACCGATGGGAGAGAGCGTGGTGAGGAT 468
Query 361 GATACGGCATTCGAAAAACAGAGTGCTCTTTTCGCTCTTGCTATCTCTGATATCG-TCTT 419
||||| || ||||| ||||||||||||||||| || |||||| |||| || || | ||||
Sbjct 469 GATACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCACTTGCTGTCTCAGACATAGTTCTT 528
Query 420 GATCAACATGTGGTGTCACGACATTGGCCGTGAACAAGCTGCTAATAAACCTCTCTTGAA 479
||||||||||||||||| || ||||| || |||||||| || ||||||||||| || ||
Sbjct 529 -ATCAACATGTGGTGTCATGATATTGGTCGGGAACAAGCAGCAAATAAACCTCT-TTTAA 586
Query 480 A-ACTGTCTTTCAGGTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTG 538
| ||||| || ||||| |||||||| ||||||||||| || || ||||| || ||||||
Sbjct 587 AGACTGTGTTCCAGGTTATGATGCGGTTGTTTAGTCCGCGGAAGACAACTTTGATGTTTG 646
Query 539 TAATACGAGATAAAACCCGGACACCGTTGGAAAATTTAGAGCCTGT-CTTAAGAGAAGAT 597
| ||| |||||||||| ||||| || ||||||||||||| || || | | || |||||
Sbjct 647 TTATAAGAGATAAAACACGGACGCCACTGGAAAATTTAGAACCAGTGC-TGAGGGAAGAC 705
Query 598 ATTCAGAAGATATGGGATTCTGTTCCAAAGCCTGAAGCACACAAGGAAACTCCTCTAAGT 657
||||| |||||||||||||| || || |||||| | |||||||| |||||||| || |||
Sbjct 706 ATTCAAAAGATATGGGATTCAGTCCCCAAGCCTCAGGCACACAAAGAAACTCCACTTAGT 765
Query 658 GACTTT-TTCAATGTTGAAGTTGTTGCTCTTTCCAGTTATGAGGAGAAGGAAGAACAGTT 716
|| ||| |||||||||||||| |||||||| || |||||||| || ||||||||||||||
Sbjct 766 GA-TTTCTTCAATGTTGAAGTAGTTGCTCTCTCGAGTTATGAAGAAAAGGAAGAACAGTT 824
Query 717 TAAAGAGCAGAT-TGCTAGTTTGAGACAACGGTTCATGCATTCTATTGCACCGGGAGGTC 775
||||||||| | | || |||||||||||||||| | || ||| ||||||| || || |
Sbjct 825 CAAAGAGCAGGTCT-ATAATTTGAGACAACGGTTCTTCCAATCTGTTGCACCTGGCGGGC 883
Query 776 TTGCTGGAGA-CAGAAGAGGAG-TGATTCCAGCCTCA-GGTTTTGCATTTAGTGCAGATC 832
||||||| || | || |||||| || | || ||| | | |||||| ||||||||| | |
Sbjct 884 TTGCTGGTGATC-GACGAGGAGTTG-TCCCTGCC-AATGCTTTTGCTTTTAGTGCAAAAC 940
Query 833 AGATCTGG-AGAGTCATCAAAGAGAATAAGGATCTT-GACCTTCCAGCCCACAAGGTCAT 890
|||| ||| | |||||| ||||| || || || ||| || |||||||| |||||||||||
Sbjct 941 AGATGTGGCA-AGTCATTAAAGACAACAAAGA-CTTGGATCTTCCAGCACACAAGGTCAT 998
Query 891 GGTGGCTACTGTGCGGTGCGAAGAAATTGCAAATGAGAAGTTTGCGC-A-TTTCATTACA 948
||| || |||||||| ||||| |||||||| ||||| || || | | | ||| || |
Sbjct 999 GGTAGCAACTGTGCGATGCGAGGAAATTGCCAATGA-AAAATT-CTCTAGTTTTATCGCG 1056
Query 949 AACGAGGACTGGCGCAAACTGGATGAGGAGGTGCAAG-CCGGTCCAGTTT-CTAATTTTG 1006
|| ||| | |||||| | |||| |||| || | || | ||||| |||| | | ||||
Sbjct 1057 AATGAGAATTGGCGCGAGTTGGAAGAGGCTGTAC-AGTCTGGTCCTGTTTCCGGA-TTTG 1114
Query 1007 GAAAG-AGGCT-TACTACCATTCTCGGTTCTTGCTTATCAGAATATGACGGGGAGGCTAC 1064
| ||| | ||| ||| | |||||| || |||||||||| |||||| || |||||
Sbjct 1115 G-AAGAAAGCTGAACT-CAATTCTCCAATCCAGCTTATCAGAGTATGACACAGAAGCTAC 1172
Query 1065 ATTCTTCGATGAAGGTGTCAGATCTTCGAAGAGACAGCAGCTTG-AAGAAAAGCTT-CTC 1122
|| ||| || ||| |||| ||||| || |||||||| |||| || |||||||| || |
Sbjct 1173 ATACTTTGAAGAAAGTGTAAGATCATCCAAGAGACAACAGC-TGCAAGAAAAG-TTATTG 1230
Query 1123 CAACTTG-TGAATCCAGCGTTT-CAAGATGT-ATTGGGACATATAAGATGGGGAATACTT 1179
||||||| | || ||| | ||| ||||| || || |||||| | |||| ||| ||||
Sbjct 1231 CAACTTGTTCAA-CCAAC-TTTCCAAGACGTGCTT-GGACATTTGAGATCTGGAGCACTT 1287
Query 1180 GAAAAGTTTAAGGCTTCTTTTGATAAGG-CTT-TAGGCATTGGTGAAGGGTTTTCTTCAG 1237
||||| || ||| | ||||||| |||| ||| | || ||| ||||||||||| |||
Sbjct 1288 GAAAACTTCAAGAATGCTTTTGAGAAGGCCTTGAATGC--TGGAGAAGGGTTTTCATCAT 1345
Query 1238 CTTCCCAAGAT--TG-GTTCAAGGCTTGCATGACCCAA-TTCGATGAA-GAGTGTGCAG- 1291
| | | || || || | || || | ||||| | | || || ||| || || |||| ||
Sbjct 1346 C-TGCGAA-ATCCTGCGCTC-AGTCATGCAT-ATCTAAGTTTGATAAAGGA-TGTGAAGA 1400
Query 1292 GTGCCATCATTGAACAAGCCAATTGGGACACATC-AAAAGTACGGGACAAGCTAGTA-CG 1349
| || | ||||||||||| |||||||| ||||| |||| | ||||| ||||| | | ||
Sbjct 1401 G-GCTGTTATTGAACAAGCAAATTGGGATACATCTAAAACT-CGGGAAAAGCTTG-AGCG 1457
Query 1350 TGACATTGAGGCTCACATTTCCTCTGTGCG-GACTTCCAAGTTATCTGAACTTACCAGTC 1408
||| ||||| || || || || ||||| || | || | ||||| ||||||| || | ||
Sbjct 1458 TGATATTGAAGCCCATATCTCTTCTGTCCGTG-CTGCAAAGTTGGCTGAACTGACTACTC 1516
Query 1409 TATACGAGTCAAAAGTTCATGAAGCTTTATCAGAACCGGTGGAAGCT-TTGTTGGATGGA 1467
| || ||||||||| | ||| ||| ||||| | ||||||||||||| || |||||||
Sbjct 1517 TGTATGAGTCAAAACTAAATGTAGCATTATCCGGACCGGTGGAAGCTCTT-CTGGATGGG 1575
Query 1468 GCCAACGATGAAACGTGGAGCA-CAGTAAAG-AAGCTTCATCGGCGTGAAACTGAATCT- 1524
|| || |||||||| ||| || || | ||| ||||| | | | || ||| |||| |
Sbjct 1576 GCTAATGATGAAACATGG-CCAGCAAT-AAGAAAGCTACTTAGACGGGAAGGAGAAT-TG 1632
Query 1525 GCAGTATCTGG--ACTCAGTAGTGCATTAGCTGGTTTTGACATGGAAGAAGAAACA-AGA 1581
|| || | ||| ||| | | |||||| ||||||| || ||||| ||||||||| ||
Sbjct 1633 GCTGTCTATGGTCTCTCCG-A-CGCATTATCTGGTTTCGAAATGGACGAAGAAACACGGA 1690
Query 1582 GATAGAATG-GTGAAGAGCCTTC-AGGATTATGCAAGAGGTGTCATTGAAACGAAGGCAA 1639
| || |||| || || | || || | |||||| | ||| | ||||||| |||||||
Sbjct 1691 G-TAAAATGCTTGGTGA-TC-TCGAGAACTATGCACGGGGTATTGTTGAAACCAAGGCAA 1747
Query 1640 AAGAAGAGGCTGTG-CGGGTTTTGATGCGTATGAAGGAAAGGTTTGGTACAATCTTCAGC 1698
| |||||||||| | | || |||||||| |||||||| || |||| |||||||||||||
Sbjct 1748 AGGAAGAGGCTG-GAAGAGTGTTGATGCGCATGAAGGATAGATTTGCTACAATCTTCAGC 1806
Query 1699 CATGATTCTGATTCAATGCCACGTGTTTGGACCGGAAAAGAGGATCTTC-GAGCAATTAC 1757
|||||||||||||||||||||||||||||||| ||||| ||||| | || ||||||| ||
Sbjct 1807 CATGATTCTGATTCAATGCCACGTGTTTGGACTGGAAAGGAGGA-CATCAGAGCAATCAC 1865
Query 1758 TAAA-TCAGCTCGATCTGCTTCCTTGAAGTTGCTCTCAGTAATGGCTGTCATTCGATTGG 1816
||| | ||||| ||||| ||||||||| |||| || || |||||| | || || ||||
Sbjct 1866 AAAAATG-GCTCGTTCTGCATCCTTGAAGCTGCTGTCTGTTATGGCTATTATACGCTTGG 1924
Query 1817 GGGATGAAC-CTGATAACATCGAGAAGACACTAACTG-TAGCTCTGCTGGATCCAACAAA 1874
||||||| | ||||| || ||||||||| | || | | ||||| | || | ||
Sbjct 1925 ATGATGAACTC-GATAATATTGAGAAGACATTGAC-GCTCTCTCTGTTTAATTCTACGG- 1981
Query 1875 G-AATGATACTTCTAAGAAA-AGCATCA-CAACA-TCTGATCCACTGGCTTCAAGCACTT 1930
| || || || ||| | || ||||||| || || | |||| |||| || ||||||||||
Sbjct 1982 GCAACAATGCTACTA-GCAAGAGCATCAGCA-CAAT-TGATTCACTTGCCTCAAGCACTT 2038
Query 1931 GGGATG-AGGTTCCATCATCAA-GAACTTTGATCACACCGGTGCAATGTAAATCTA-TAT 1987
|||| | ||||| || || || || |||||||||| || ||||| |||||||| | | |
Sbjct 2039 GGGA-GCAGGTTGCACCAGAAAAGA-CTTTGATCACGCCTGTGCAGTGTAAATC-ACTGT 2095
Query 1988 GGAGACAGTTCAAGA-CAGAAACAGAGTATACAGTGACTCAAGCCATATCCGCACAGGAG 2046
|||| || ||||||| | || ||||| ||||| || || || ||||| || ||||||||
Sbjct 2096 GGAGGCAATTCAAGAAC-GAGACAGAATATACCGTTACACAGGCCATTTCTGCACAGGAA 2154
Query 2047 GCGAACAGGCGTGGA-AATAACTGGTTACCTCCTCCATGGGCAATTCTTGCATTGATCGT 2105
|| ||| | || | || |||||| | || |||||||||||||| ||||| || | ||
Sbjct 2155 GCTAACCGACGAA-ATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGT 2213
Query 2106 CCTTGGATTCAACGAATTCATGACTCTTTTAAGAAACCCTCTCTA--TCTTGGTGTCATG 2163
||||||||||| ||||| |||||||| |||||||| ||||| | |||| || || |
Sbjct 2214 TCTTGGATTCAATGAATTTATGACTCTCTTAAGAAATCCTCTATGGCTCTTAGT-TCTT- 2271
Query 2164 TTTGTCGCTTTCCTTCTGGCAAAAGCACT-GTGGACGCAATTGGATATCCCTGGCGAATT 2222
||||| | | |||| | | ||||| || |||| |||||| |||| | || |||||
Sbjct 2272 TTTGTGGGATACCTTATTTCCAAAGC-CTTGTGGGTGCAATTAAATATTTCAGGAGAATT 2330
Query 2223 CCGCAA 2228
||||||
Sbjct 2331 CCGCAA 2336
> Ahg494463 jgi|Araly1|494463|fgenesh2_kg.8__279__AT5G45160.1
Length=2782
Score = 427 bits (231), Expect = 2e-118
Identities = 635/822 (77%), Gaps = 60/822 (7%)
Strand=Plus/Plus
Query 139 TGTGGCCTTTCTTATGCTGTTGTCT-CTATTATGGGTCCTCAAAGTAGCGGGAAAAGTAC 197
||||| ||||||||||||||||| | | || ||||||||||||||||| ||||| |||||
Sbjct 243 TGTGGTCTTTCTTATGCTGTTGT-TGCAATCATGGGTCCTCAAAGTAGTGGGAAGAGTAC 301
Query 198 ACTATTGAACCATTTGTTTGGAACAAACTTTATGGAGATGGATGCATTCAAGGGAAGGTC 257
||| ||||| ||||||||| ||| | |||| ||| |||||||| || |||||||
Sbjct 302 ACTTTTGAATCATTTGTTTAAAACCAGTTTTAGGGAAATGGATGCTTTTGCGGGAAGGAG 361
Query 258 TCAGACCACAAAAGGTATCTGGCTTGCAAGATGTGCCGGTATAGAGCCTTGCACCCTTG- 316
||| || || |||||||| ||| | || || |||| ||||| ||||||| ||| |||
Sbjct 362 TCAAACAACTAAAGGTATTTGGATGGCTAGGTGTGTTGGTATTGAGCCTTTCACAATTGC 421
Query 317 TAATGGATTTAGAGGGCACCGATGGCAGAGAGCGAGGAGAGGATGATACGGCATTCGAAA 376
| |||||||| ||||| || ||||| ||||| |||| |||||||| || |||| || |
Sbjct 422 T-ATGGATTTGGAGGGTACTGATGGGAGAGAAAGAGGCGAGGATGACACCACATTTGAGA 480
Query 377 AACAGAGTGCTCT-TTTCGCTCTTGCTATCT-CTGATATCGT-CTTGATCAACATGTGGT 433
||| ||||| || ||| ||| | ||| | | | ||||| || | |||| ||||||||||
Sbjct 481 GACAAAGTGCCCTGTTT-GCTATCGCTGT-TGCCGATATTGTAC-TGATAAACATGTGGT 537
Query 434 GTCACGACATTGGCCGTGAACAAGCTGCTAATAAACC-TCT-CTTGAAA-ACTGTCTTT- 489
| || |||||||| | ||||| || || || ||||| | | | | ||| || || |||
Sbjct 538 GCCATGACATTGGAAGGGAACAGGCGGCCAACAAACCAT-TAC-T-AAAGACAGT-TTTC 593
Query 490 CAGGTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTGTAATACGAGAT 549
||||| ||| |||| |||||||| || || |||||||| | || ||||| ||||| |||
Sbjct 594 CAGGTCATGCTGCGGTTGTTTAGCCCTCGAAAAACAACTCTTCTTTTTGTCATACGTGAT 653
Query 550 AAAACCCGGACACCGTTGGAAAAT--TTAGAGCCTGTCT-TAAGAGAAGATATTCAGAAG 606
||||| ||| ||| | | | | || || | || || ||||||||||||||||||||
Sbjct 654 AAAACAAAGACTCCGATAG-AGCTGCTT-GAACGTG-CTCTAAGAGAAGATATTCAGAAG 710
Query 607 ATATGGGATTCT-GTTC-CAAAGCCTGAAGCACACAAGGAA-ACTCCTCTAAGTGACTTT 663
|||||||||| | |||| ||| ||||||||||||||| || || ||||||| ||| ||
Sbjct 711 ATATGGGATT-TAGTTCGCAA-GCCTGAAGCACACAAA-AATACACCTCTAAATGAATTC 767
Query 664 TTCAATGT--TGAAGTTGTTGCTCTT-TCCAGTTATGAGGAGAAGGAAGAACAGTTTAAA 720
|||||||| ||| ||||||| || ||||| ||||| ||||| ||| ||||||||||
Sbjct 768 TTCAATGTAATGA--TTGTTGCA-TTATCCAGCTATGAAGAGAAAGAAAAACAGTTTAA- 823
Query 721 G-A-GCAGATTGCT-AGTTTGAGACA-ACGGTTCATGCATTCTATTGCACC-GGGAGGTC 775
| | | || ||||| |||| ||| || | |||| | ||||| ||| |||| ||| || |
Sbjct 824 GCAAG-AGGTTGCTGAGTT-GAGGCAGA-GGTTTTTCCATTCCATTTCACCTGGG-GGAC 879
Query 776 TTGCTGGAGACAGAAGAGGAGT-GATTCCAGCCTCAGG-TTTTGCATTT-AG-TGC-AGA 830
||||||| || ||| | || || | |||| || ||||| |||| | ||| || | | ||
Sbjct 880 TTGCTGGTGATAGACGTGGTGTAG-TTCCTGCTTCAGGATTTT-C-TTTCAGCTCCCAG- 935
Query 831 TCAGATCTGGAGAGTCATCAAAGAGAATA-AGGATCTTG-ACCTTCCAGCCCACAAGGTC 888
||||| |||| ||| || |||||||||| || | |||| ||||||| || ||||||||
Sbjct 936 -CAGATTTGGAAAGTTATAAAAGAGAATAGAG-A-CTTGGACCTTCCTGCTCACAAGGTA 992
Query 889 ATGGTGGCTACTGTGCGGTGCGAAGAAATTGCAAATGAGAAG 930
||||| || ||||| ||||| ||||| || || |||||||||
Sbjct 993 ATGGTTGCCACTGTTCGGTGTGAAGAGATAGCCAATGAGAAG 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90997595305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5